Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Reverse (-)

23991213 .. 23992908

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTTTGTCTTCCAAAACCCTAAAGTCAACTCTCTTCTTCCTCTCTATTATTTTCCTCTGTTTCTCCTTGATCCTAGCTCACGGCGGCATAGACGACGGCGACGAAGAAGAGGAGACCAACCAGCCACCTCCGGCCACCGGAACAACCACCGTCGTGAATCTCCGATCGAAAAGCTTGGTGCTTGTGAAGATCTACTGTATTATAATACTCTTCTTTAGCACATTCTTAGCCGGAGTTTCACCTTACTTTTACCGATGGAACGAGTCGTTTCTCCTCCTCGGAACTCAATTCTCCGGTGGTATATTCCTCGCGACCGCTCTAATCCATTTCCTCAGCGACGCTAACGAGACTTTCCGAGGGTTAAAACACAAAGAGTATCCTTACGCCTTCATGTTAGCAGCCGCTGGATATTGCCTTACAATGCTGGCAGATGTGGCGGTTGCGTTTGTAGCGGCTGGGAGTAATAACAACCACGTCGGAGCTAGCGTCGGAGAGTCGAGGGAGGATGATGACGTGGCAGTGAAAGAGGAAGGACGTCGTGAGATAAAGAGTGGTGTTGATGTGAGTCAAGCGCTTATACGAACTAGTGGATTTGGAGACACAGCTTTGCTGATTTTTGCTCTTTGTTTTCACTCCATCTTTGAGGGAATCGCCATTGGTCTCTCAGACACTAAAAGCGACGCTTGGAGAAACCTATGGACAATATCGTTGCACAAGGTCTTTGCGGCCGTAGCAATGGGAATAGCTCTTCTCAAGCTAATCCCTAAACGTCCATTCTTCCTCACTGTCGTCTACTCCTTCGCCTTTGGGATATCGAGTCCCATAGGTGTCGGGATTGGCATAGGAATCAATGCCACTAGCCAAGGAGCTGGTGGTGACTGGACCTACGCGATCTCTATGGGCCTTGCGTGTGGAGTTTTTGTGTACGTTGCGGTTAACCATCTCATCTCAAAAGGGTATAAGCCTCGTGAGGAATGTTACTTCGACAAGCCAATCTACAAGTTTATTGCCGTCTTCCTCGGTGTTGCTTTGCTCTCTGTTGTAATGATTTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

353

Amino Acids

38.31

Weight (kDa)

5.99

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	62 - 349	1.1e-58	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AatII	GACGTC	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	2 cut(s)	314, 893
AciI	CCGC	7 cut(s)	87, 318, 405, 440, 455, 728, 935
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	2 cut(s)	135, 729
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	1 cut(s)	929
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	140
AhlI	ACTAGT	1 cut(s)	587
AjiI	CACGTC	2 cut(s)	478, 517
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	80, 177, 485, 608, 749, 760, 872
AluI	AGCT	7 cut(s)	80, 177, 485, 608, 749, 760, 872
Alw26I	GTCTC	4 cut(s)	110, 344, 594, 668
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	407
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	3 cut(s)	135, 729, 904
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	885, 904
AsuHPI	GGTGA	2 cut(s)	234, 890
AsuNHI	GCTAGC	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	885
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	2 cut(s)	3, 1009
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	3 cut(s)	252, 647, 951
BceAI	ACGGC	4 cut(s)	100, 115, 716, 998
BciVI	GTATCC	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	110, 344, 594, 668
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	4 cut(s)	77, 486, 588, 861
BfoI	RGCGCY	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	390
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	88, 402, 405, 456, 729
BlsI	GCNGC	5 cut(s)	89, 403, 406, 457, 730
Bme18I	GGWCC	1 cut(s)	885
BmgBI	CACGTC	2 cut(s)	478, 517
BmgT120I	GGNCC	2 cut(s)	885, 904
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	3, 1009
Bpu10I	CCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	538
BsaI	GGTCTC	2 cut(s)	110, 668
BsaJI	CCNNGG	4 cut(s)	280, 358, 865, 1021
BsaWI	WCCGGW	2 cut(s)	140, 296
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	744
BseDI	CCNNGG	4 cut(s)	280, 358, 865, 1021
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	349, 681
BseNI	ACTGG	1 cut(s)	887
BseRI	GAGGAG	3 cut(s)	128, 266, 269
BseX3I	CGGCCG	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	314, 893
Bsh1285I	CGRYCG	3 cut(s)	170, 318, 732
BshFI	GGCC	3 cut(s)	137, 731, 906
BsiEI	CGRYCG	3 cut(s)	170, 318, 732
BsiSI	CCGG	4 cut(s)	134, 141, 234, 297
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	4 cut(s)	110, 344, 594, 668
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	137, 731, 906
Bso31I	GGTCTC	2 cut(s)	110, 668
Bsp143I	GATC	4 cut(s)	72, 167, 192, 894
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	7 cut(s)	87, 318, 405, 440, 455, 728, 935
BspANI	GGCC	3 cut(s)	137, 731, 906
BspCNI	CTCAG	2 cut(s)	348, 680
BspFNI	CGCG	2 cut(s)	314, 893
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	756
BspTNI	GGTCTC	2 cut(s)	110, 668
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	887
BssECI	CCNNGG	4 cut(s)	280, 358, 865, 1021
BssMI	GATC	4 cut(s)	72, 167, 192, 894
BssNI	GRCGYC	1 cut(s)	538
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	1 cut(s)	865
Bst2BI	CACGAG	1 cut(s)	969
Bst4CI	ACNGT	3 cut(s)	154, 200, 790
Bst6I	CTCTTC	4 cut(s)	41, 105, 218, 756
BstACI	GRCGYC	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	429, 487
BstDEI	CTNAG	3 cut(s)	229, 335, 667
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	2 cut(s)	314, 893
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	4 cut(s)	75, 170, 195, 897
BstMAI	GTCTC	4 cut(s)	110, 344, 594, 668
BstMBI	GATC	4 cut(s)	72, 167, 192, 894
BstMCI	CGRYCG	3 cut(s)	170, 318, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 452, 734
BstUI	CGCG	2 cut(s)	314, 893
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	2 cut(s)	3, 1009
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	137, 731, 906
BtrI	CACGTC	2 cut(s)	478, 517
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	528, 786
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	429, 487
CaiI	CAGNNNCTG	1 cut(s)	407
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	885, 904
CseI	GACGC	3 cut(s)	350, 478, 692
Csp6I	GTAC	1 cut(s)	928
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	3 cut(s)	229, 335, 667
DpnI	GATC	4 cut(s)	74, 169, 194, 896
DpnII	GATC	4 cut(s)	72, 167, 192, 894
EaeI	YGGCCR	2 cut(s)	135, 729
EagI	CGGCCG	1 cut(s)	729
Eam1104I	CTCTTC	4 cut(s)	41, 105, 218, 756
EarI	CTCTTC	4 cut(s)	41, 105, 218, 756
EclXI	CGGCCG	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	865
Eco31I	GGTCTC	2 cut(s)	110, 668
Eco32I	GATATC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	885
Eco47III	AGCGCT	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	1 cut(s)	865
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	1 cut(s)	397
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	5 cut(s)	88, 402, 405, 456, 729
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	5 cut(s)	88, 402, 405, 456, 729
FspBI	CTAG	4 cut(s)	77, 486, 588, 861
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	5 cut(s)	88, 402, 405, 456, 729
GsaI	CCCAGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	137, 731, 906
HapII	CCGG	4 cut(s)	134, 141, 234, 297
HgaI	GACGC	3 cut(s)	350, 478, 692
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	2 cut(s)	30, 940
HindII	GTYRAC	2 cut(s)	30, 940
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	7 cut(s)	160, 266, 497, 568, 651, 820, 849
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	4 cut(s)	134, 141, 234, 297
HphI	GGTGA	2 cut(s)	234, 890
Hpy166II	GTNNAC	4 cut(s)	30, 796, 928, 940
Hpy188I	TCNGA	6 cut(s)	167, 284, 359, 482, 494, 670
Hpy188III	TCNNGA	5 cut(s)	157, 313, 542, 835, 971
Hpy8I	GTNNAC	4 cut(s)	30, 796, 928, 940
Hpy99I	CGWCG	8 cut(s)	101, 107, 158, 344, 482, 494, 543, 686
HpyAV	CCTTC	3 cut(s)	400, 527, 811
HpyCH4III	ACNGT	3 cut(s)	154, 200, 790
HpyCH4IV	ACGT	5 cut(s)	477, 516, 538, 772, 930
HpyCH4V	TGCA	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 452, 734
HpyF3I	CTNAG	3 cut(s)	229, 335, 667
HpySE526I	ACGT	5 cut(s)	477, 516, 538, 772, 930
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	575
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	72, 167, 192, 894
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	2 cut(s)	482, 869
Lsp1109I	GCAGC	1 cut(s)	413
MaeI	CTAG	4 cut(s)	77, 486, 588, 861
MaeII	ACGT	5 cut(s)	477, 516, 538, 772, 930
MaeIII	GTNAC	2 cut(s)	878, 980
MalI	GATC	4 cut(s)	74, 169, 194, 896
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	4 cut(s)	72, 167, 192, 894
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	4 cut(s)	275, 506, 577, 829
MmeI	TCCRAC	2 cut(s)	460, 472
MseI	TTAA	2 cut(s)	365, 939
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	4 cut(s)	134, 141, 234, 297
MvnI	CGCG	2 cut(s)	314, 893
MwoI	GCNNNNNNNGC	3 cut(s)	437, 452, 734
NdeII	GATC	4 cut(s)	72, 167, 192, 894
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	878
NruI	TCGCGA	1 cut(s)	314
OliI	CACNNNNGTG	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 486
PfeI	GAWTC	3 cut(s)	160, 651, 849
PkrI	GCNGC	5 cut(s)	89, 403, 406, 457, 730
Ple19I	CGATCG	1 cut(s)	170
PleI	GAGTC	4 cut(s)	274, 505, 576, 828
PpsI	GAGTC	4 cut(s)	274, 505, 576, 828
PsiI	TTATAA	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	885, 904
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	170
RruI	TCGCGA	1 cut(s)	314
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	2 cut(s)	365, 939
SatI	GCNGC	5 cut(s)	88, 402, 405, 456, 729
Sau3AI	GATC	4 cut(s)	72, 167, 192, 894
Sau96I	GGNCC	2 cut(s)	885, 904
SchI	GAGTC	4 cut(s)	275, 506, 577, 829
SinI	GGWCC	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	7 cut(s)	87, 318, 405, 440, 455, 728, 935
SspMI	CTAG	4 cut(s)	77, 486, 588, 861
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	3 cut(s)	154, 200, 790
TaiI	ACGT	5 cut(s)	480, 519, 541, 775, 933
TaqI	TCGA	4 cut(s)	170, 500, 818, 987
TasI	AATT	1 cut(s)	290
TauI	GCSGC	4 cut(s)	90, 407, 458, 731
TfiI	GAWTC	3 cut(s)	160, 651, 849
Tru1I	TTAA	2 cut(s)	365, 939
Tru9I	TTAA	2 cut(s)	365, 939
TscAI	CASTG	2 cut(s)	528, 793
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	528, 793
VpaK11BI	GGWCC	1 cut(s)	885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	4 cut(s)	77, 486, 588, 861
ZraI	GACGTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.