Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001473.1

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Forward (+)

55425 .. 57031

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001473.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggcttccacttttttcatcaagactctcaagtcaattacctctccctcactttgtgtgcttctactcctgcaaccgctcctaattaatggtcatggaggcgaagaccatgacagcaatagcagcagcgacgagcacgaagttctgcattcgaaaagcttgctgttggtgaaagtatggtgtttgataattttactcgtgaccacgttcattggtggtatctctccatatttttatcgatggaatgaaaactttcttctcttgggcactcaatttgcgggtggtgtttttctcggtacctctttgatgcacttcttgagcgattcagctgagacattcggaagccttacgaccaaaacgtaccctttcgcattcatgctagcttcggctggttatatgctaaccatgtttggcgattgcgtggttatgcttgtgacgaggtctagggaaacagaagctagagttgaagtggaggagggaagggttgatgtggtgcatgaggacaaggaagttccaattggagatggggtcaacccagttttcttgaagacttcttcttttggagacaccatacttcttattcttgccctgtgtttccattcaatttttgagggtattgctgttggagttgcagatacaaaggcagatgcatggaggaatctatggacaatatcattacacaagatttttgcagccgttgcaatgggaattgcattactgaggatgctaccaaagagagcatttctagtaactgcatcttattcttttgcttttgctttttctagtcccattggagtaggcatagggattgccattgatgccacaactcaaggagctgtagctgattggatctatgcaatttccatgggacttgcttgtggggtttttgtctacgttgcaatcaaccacctcatagccaaagggtttaaaccacaaaccaaatgttactttgacactcctgctttcaagtttcttgctgtgcttcttggggtgggagtcatagcagtagttatgatctgggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

341

Amino Acids

37.1

Weight (kDa)

5.83

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	891
AciI	CCGC	2 cut(s)	77, 278
AclWI	GGATC	1 cut(s)	857
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	298, 362
AgsI	TTSAA	4 cut(s)	467, 547, 603, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	6 cut(s)	159, 329, 383, 458, 836, 842
AluI	AGCT	6 cut(s)	159, 329, 383, 458, 836, 842
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	326, 558
AlwI	GGATC	1 cut(s)	857
ApeKI	GCWGC	3 cut(s)	123, 126, 692
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	111, 554
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	135, 138, 704
BccI	CCATC	2 cut(s)	234, 518
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcoDI	GTCTC	2 cut(s)	326, 558
BfaI	CTAG	5 cut(s)	380, 444, 459, 746, 783
BfmI	CTRYAG	1 cut(s)	837
BisI	GCNGC	3 cut(s)	124, 127, 693
BlsI	GCNGC	3 cut(s)	125, 128, 694
BmiI	GGNNCC	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	5 cut(s)	297, 637, 714, 764, 808
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	111, 554
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	3 cut(s)	14, 337, 813
Bsa29I	ATCGAT	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	321, 710
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	135, 138, 704
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	138
BslFI	GGGAC	2 cut(s)	771, 882
BsmAI	GTCTC	2 cut(s)	326, 558
BsmFI	GGGAC	2 cut(s)	771, 882
BsmI	GAATGC	2 cut(s)	148, 371
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	138, 269
Bsp143I	GATC	2 cut(s)	849, 1014
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	2 cut(s)	77, 278
BspCNI	CTCAG	2 cut(s)	322, 711
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	857
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	2 cut(s)	849, 1014
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	864
Bst2BI	CACGAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	161, 381
BstDEI	CTNAG	2 cut(s)	330, 719
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	2 cut(s)	852, 1017
BstMAI	GTCTC	2 cut(s)	326, 558
BstMBI	GATC	2 cut(s)	849, 1014
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 698, 818
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	135, 138, 704
BstV2I	GAAGAC	2 cut(s)	111, 554
BstX2I	RGATCY	1 cut(s)	849
BstYI	RGATCY	1 cut(s)	849
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	1 cut(s)	729
Cac8I	GCNNGC	2 cut(s)	161, 381
ClaI	ATCGAT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	297, 361
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	7 cut(s)	95, 110, 376, 406, 497, 651, 865
CviQI	GTAC	2 cut(s)	297, 361
DdeI	CTNAG	2 cut(s)	330, 719
DpnI	GATC	2 cut(s)	851, 1016
DpnII	GATC	2 cut(s)	849, 1014
DraI	TTTAAA	1 cut(s)	928
DraIII	CACNNNGTG	1 cut(s)	56
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	864
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	7 cut(s)	98, 113, 379, 409, 500, 654, 868
FaqI	GGGAC	2 cut(s)	771, 882
FatI	CATG	7 cut(s)	94, 109, 375, 405, 496, 650, 864
FauI	CCCGC	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	3 cut(s)	124, 127, 693
FokI	GGATG	1 cut(s)	736
Fsp4HI	GCNGC	3 cut(s)	124, 127, 693
FspBI	CTAG	5 cut(s)	380, 444, 459, 746, 783
GluI	GCNGC	3 cut(s)	124, 127, 693
Hin1II	CATG	7 cut(s)	98, 113, 379, 409, 500, 654, 868
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	4 cut(s)	25, 323, 658, 996
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	532, 892
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	4 cut(s)	22, 199, 316, 544
Hpy8I	GTNNAC	2 cut(s)	532, 892
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	474
HpyCH4IV	ACGT	3 cut(s)	206, 359, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 698, 818
HpyF3I	CTNAG	2 cut(s)	330, 719
HpySE526I	ACGT	3 cut(s)	206, 359, 894
Hsp92II	CATG	7 cut(s)	98, 113, 379, 409, 500, 654, 868
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	849, 1014
LmnI	GCTCC	2 cut(s)	84, 833
LpnPI	CCDG	6 cut(s)	83, 375, 549, 602, 972, 1003
Lsp1109I	GCAGC	3 cut(s)	135, 138, 704
LweI	GCATC	5 cut(s)	297, 637, 714, 764, 808
MaeI	CTAG	5 cut(s)	380, 444, 459, 746, 783
MaeII	ACGT	3 cut(s)	206, 359, 894
MaeIII	GTNAC	4 cut(s)	199, 433, 748, 944
MalI	GATC	2 cut(s)	851, 1016
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	849, 1014
MboII	GAAGA	4 cut(s)	116, 248, 546, 559
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	849
MhlI	GDGCHC	2 cut(s)	138, 269
MluCI	AATT	8 cut(s)	36, 84, 189, 272, 516, 603, 708, 858
MlyI	GAGTC	2 cut(s)	19, 1005
MmeI	TCCRAC	1 cut(s)	604
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	3 cut(s)	87, 927, 1024
MspA1I	CMGCKG	1 cut(s)	329
MssI	GTTTAAAC	1 cut(s)	928
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	2 cut(s)	148, 371
MwoI	GCNNNNNNNGC	3 cut(s)	123, 698, 818
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	2 cut(s)	849, 1014
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	7 cut(s)	98, 113, 379, 409, 500, 654, 868
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	199, 433
NsiI	ATGCAT	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	2 cut(s)	148, 371
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	323, 658
PflFI	GACNNNGTC	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	125, 128, 694
PleI	GAGTC	2 cut(s)	19, 1004
PmeI	GTTTAAAC	1 cut(s)	928
PpsI	GAGTC	2 cut(s)	19, 1004
PshBI	ATTAAT	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	849
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	298, 362
RsaNI	GTAC	2 cut(s)	297, 361
SaqAI	TTAA	3 cut(s)	87, 927, 1024
SatI	GCNGC	3 cut(s)	124, 127, 693
Sau3AI	GATC	2 cut(s)	849, 1014
SchI	GAGTC	2 cut(s)	19, 1005
SduI	GDGCHC	2 cut(s)	138, 269
SfaNI	GCATC	5 cut(s)	297, 637, 714, 764, 808
SfcI	CTRYAG	1 cut(s)	837
SfuI	TTCGAA	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	29, 316, 828
SmoI	CTYRAG	3 cut(s)	29, 316, 828
Sse9I	AATT	8 cut(s)	36, 84, 189, 272, 516, 603, 708, 858
SsiI	CCGC	2 cut(s)	77, 278
SspMI	CTAG	5 cut(s)	380, 444, 459, 746, 783
StyI	CCWWGG	1 cut(s)	864
TaiI	ACGT	3 cut(s)	209, 362, 897
TaqI	TCGA	2 cut(s)	152, 238
TasI	AATT	8 cut(s)	36, 84, 189, 272, 516, 603, 708, 858
TfiI	GAWTC	2 cut(s)	323, 658
Tru1I	TTAA	3 cut(s)	87, 927, 1024
Tru9I	TTAA	3 cut(s)	87, 927, 1024
TseFI	GTSAC	2 cut(s)	199, 433
TseI	GCWGC	3 cut(s)	123, 126, 692
Tsp45I	GTSAC	2 cut(s)	199, 433
TspDTI	ATGAA	4 cut(s)	7, 199, 261, 364
Tth111I	GACNNNGTC	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	891
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	5 cut(s)	380, 444, 459, 746, 783
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.