Rh5CG472800

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016510
Physical Location & Seq
Reverse (-)
65971485 .. 65973091
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG472800.1

Sequence Viewer

Length: 1026 bp
ATGGCTTCCACTTTTTTCATCAAGACTCTCAAGTCAATTACCTCTCCCTCACTTTGTGTGCTTCTACTCCTGCAACCGCTCCTAATTAATGGTCATGGAGGCGAAGACCATGACAGCAATAGCAGCAGCGACGAGCACGAAGTTCTGCATTCGAAAAGCTTGCTGTTGGTGAAAGTATGGTGTTTGATAATTTTACTCGTGACCACGTTCATTGGTGGTATCTCTCCATATTTTTATCGATGGAATGAAAACTTTCTTCTCTTGGGCACTCAATTTGCGGGTGGTGTTTTTCTCGGTACCTCTTTGATGCACTTCTTGAGCGATTCAGCTGAGACATTCGGAAGCCTTACGACCAAAACGTACCCTTTCGCATTCATGCTAGCTTCGGCTGGTTATATGCTAACCATGTTTGGCGATTGCGTGGTTATGCTTGTGACGAGGTCTAGGGAAACAGAAGCTAGAGTTGAAGTGGAGGAGGGAAGGGTTGATGTGGAGCATGAGGACAAGGAAGTTCCAATTGGAGATGGGGTCAACCCAGTTTTCTTGAAGACTTCTTCTTTTGGAGACACCATACTTCTTATTCTTGCCCTGTGTTTCCATTCAATTTTTGAGGGTATTGCTGTTGGAGTTGCAGATACAAAGGCAGATGCATGGAGGAATCTATGGACAATATCATTACACAAGATTTTTGCAGCCGTTGCAATGGGAATTGCATTACTGAGGATGCTACCAAAGAGAGCATTTCTAGTAACTGCATCTTATTCTTTTGCTTTTGCTGTTTCTAGTCCCATTGGAGTAGGCATAGGGATTGCCATTGATGCCACAACTCAAGGAGCTGTAGCTGATTGGATCTATGCAATTTCCATGGGACTTGCTTGTGGGGTTTTTGTCTACGTTGCAATCAACCACCTCATAGCCAAAGGGTTTAAACCACAAACCAAATGTTACTTTGACACTCCTGCTTTCAAGTTTCTTGCTGTGCTTCTTGGGGTGGGAGTCATAGCAGTAGTTATGATCTGGGATTAA

Protein Analysis

341

Amino Acids

37.08

Weight (kDa)

5.7

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 56 - 337 9.8e-49 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59520
fragaria_vesca FvH4_3g36840
malus_domestica MD11G1096400.v1.1
prunus_persica Prupe.6G072000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065941
rosa_laevigata RLG00000035831
rosa_multiflora Rmu_sc0001473.1_g000013
rosa_roxburghii Rroxscaffold_1G00015030
rosa_rugosa Rorug05G0375700
rosa_samantha Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana Rw5G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 891
AciI CCGC 2 cut(s) 77, 278
AclWI GGATC 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 298, 362
AgsI TTSAA 4 cut(s) 467, 547, 603, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 6 cut(s) 159, 329, 383, 458, 836, 842
AluI AGCT 6 cut(s) 159, 329, 383, 458, 836, 842
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 326, 558
AlwI GGATC 1 cut(s) 857
ApeKI GCWGC 3 cut(s) 123, 126, 692
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 296
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 111, 554
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 135, 138, 704
BccI CCATC 2 cut(s) 234, 518
BceAI ACGGC 1 cut(s) 680
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 2 cut(s) 326, 558
BfaI CTAG 5 cut(s) 380, 444, 459, 746, 783
BfmI CTRYAG 1 cut(s) 837
BisI GCNGC 3 cut(s) 124, 127, 693
BlsI GCNGC 3 cut(s) 125, 128, 694
BmiI GGNNCC 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 5 cut(s) 297, 637, 714, 764, 808
BmtI GCTAGC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 2 cut(s) 111, 554
Bpu14I TTCGAA 1 cut(s) 152
BpuEI CTTGAG 3 cut(s) 14, 337, 813
Bsa29I ATCGAT 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 864
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 864
BseGI GGATG 1 cut(s) 729
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 2 cut(s) 321, 710
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 3 cut(s) 135, 138, 704
BshNI GGYRCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 2 cut(s) 771, 882
BsmAI GTCTC 2 cut(s) 326, 558
BsmFI GGGAC 2 cut(s) 771, 882
BsmI GAATGC 2 cut(s) 148, 371
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 138, 269
Bsp143I GATC 2 cut(s) 849, 1014
Bsp19I CCATGG 1 cut(s) 864
BspACI CCGC 2 cut(s) 77, 278
BspCNI CTCAG 2 cut(s) 322, 711
BspDI ATCGAT 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 1 cut(s) 857
BspT104I TTCGAA 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 1 cut(s) 536
BssECI CCNNGG 1 cut(s) 864
BssMI GATC 2 cut(s) 849, 1014
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 864
Bst2BI CACGAG 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 161, 381
BstDEI CTNAG 2 cut(s) 330, 719
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 1 cut(s) 729
BstKTI GATC 2 cut(s) 852, 1017
BstMAI GTCTC 2 cut(s) 326, 558
BstMBI GATC 2 cut(s) 849, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 123, 698, 818
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 135, 138, 704
BstV2I GAAGAC 2 cut(s) 111, 554
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
Bsu15I ATCGAT 1 cut(s) 238
BsuTUI ATCGAT 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 1 cut(s) 729
Cac8I GCNNGC 2 cut(s) 161, 381
ClaI ATCGAT 1 cut(s) 238
Csp6I GTAC 2 cut(s) 297, 361
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 7 cut(s) 95, 110, 376, 406, 497, 651, 865
CviQI GTAC 2 cut(s) 297, 361
DdeI CTNAG 2 cut(s) 330, 719
DpnI GATC 2 cut(s) 851, 1016
DpnII GATC 2 cut(s) 849, 1014
DraI TTTAAA 1 cut(s) 928
DraIII CACNNNGTG 1 cut(s) 56
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 864
EcoT14I CCWWGG 1 cut(s) 864
EcoT22I ATGCAT 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 7 cut(s) 98, 113, 379, 409, 500, 654, 868
FaqI GGGAC 2 cut(s) 771, 882
FatI CATG 7 cut(s) 94, 109, 375, 405, 496, 650, 864
FauI CCCGC 1 cut(s) 271
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 3 cut(s) 124, 127, 693
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 3 cut(s) 124, 127, 693
FspBI CTAG 5 cut(s) 380, 444, 459, 746, 783
GluI GCNGC 3 cut(s) 124, 127, 693
Hin1II CATG 7 cut(s) 98, 113, 379, 409, 500, 654, 868
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 4 cut(s) 25, 323, 658, 996
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 532, 892
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 4 cut(s) 22, 199, 316, 544
Hpy8I GTNNAC 2 cut(s) 532, 892
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 474
HpyCH4IV ACGT 3 cut(s) 206, 359, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 698, 818
HpyF3I CTNAG 2 cut(s) 330, 719
HpySE526I ACGT 3 cut(s) 206, 359, 894
Hsp92II CATG 7 cut(s) 98, 113, 379, 409, 500, 654, 868
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 849, 1014
LmnI GCTCC 3 cut(s) 84, 493, 833
LpnPI CCDG 6 cut(s) 83, 375, 549, 602, 972, 1003
Lsp1109I GCAGC 3 cut(s) 135, 138, 704
LweI GCATC 5 cut(s) 297, 637, 714, 764, 808
MaeI CTAG 5 cut(s) 380, 444, 459, 746, 783
MaeII ACGT 3 cut(s) 206, 359, 894
MaeIII GTNAC 4 cut(s) 199, 433, 748, 944
MalI GATC 2 cut(s) 851, 1016
MbiI CCGCTC 1 cut(s) 79
MboI GATC 2 cut(s) 849, 1014
MboII GAAGA 4 cut(s) 116, 248, 546, 559
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 2 cut(s) 138, 269
MluCI AATT 8 cut(s) 36, 84, 189, 272, 516, 603, 708, 858
MlyI GAGTC 2 cut(s) 19, 1005
MmeI TCCRAC 1 cut(s) 604
Mph1103I ATGCAT 1 cut(s) 652
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 3 cut(s) 87, 927, 1024
MspA1I CMGCKG 1 cut(s) 329
MssI GTTTAAAC 1 cut(s) 928
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 2 cut(s) 148, 371
MwoI GCNNNNNNNGC 3 cut(s) 123, 698, 818
NcoI CCATGG 1 cut(s) 864
NdeII GATC 2 cut(s) 849, 1014
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 7 cut(s) 98, 113, 379, 409, 500, 654, 868
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 199, 433
NsiI ATGCAT 1 cut(s) 652
NspV TTCGAA 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PctI GAATGC 2 cut(s) 148, 371
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 323, 658
PflFI GACNNNGTC 1 cut(s) 439
PkrI GCNGC 3 cut(s) 125, 128, 694
PleI GAGTC 2 cut(s) 19, 1004
PmeI GTTTAAAC 1 cut(s) 928
PpsI GAGTC 2 cut(s) 19, 1004
PshBI ATTAAT 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 849
PsyI GACNNNGTC 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 298, 362
RsaNI GTAC 2 cut(s) 297, 361
SaqAI TTAA 3 cut(s) 87, 927, 1024
SatI GCNGC 3 cut(s) 124, 127, 693
Sau3AI GATC 2 cut(s) 849, 1014
SchI GAGTC 2 cut(s) 19, 1005
SduI GDGCHC 2 cut(s) 138, 269
SfaNI GCATC 5 cut(s) 297, 637, 714, 764, 808
SfcI CTRYAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 152
SmlI CTYRAG 3 cut(s) 29, 316, 828
SmoI CTYRAG 3 cut(s) 29, 316, 828
Sse9I AATT 8 cut(s) 36, 84, 189, 272, 516, 603, 708, 858
SsiI CCGC 2 cut(s) 77, 278
SspMI CTAG 5 cut(s) 380, 444, 459, 746, 783
StyI CCWWGG 1 cut(s) 864
TaiI ACGT 3 cut(s) 209, 362, 897
TaqI TCGA 2 cut(s) 152, 238
TasI AATT 8 cut(s) 36, 84, 189, 272, 516, 603, 708, 858
TfiI GAWTC 2 cut(s) 323, 658
Tru1I TTAA 3 cut(s) 87, 927, 1024
Tru9I TTAA 3 cut(s) 87, 927, 1024
TseFI GTSAC 2 cut(s) 199, 433
TseI GCWGC 3 cut(s) 123, 126, 692
Tsp45I GTSAC 2 cut(s) 199, 433
TspDTI ATGAA 4 cut(s) 7, 199, 261, 364
Tth111I GACNNNGTC 1 cut(s) 439
VspI ATTAAT 1 cut(s) 87
XmiI GTMKAC 1 cut(s) 891
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 5 cut(s) 380, 444, 459, 746, 783
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.