Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Forward (+)

18664520 .. 18666457

Gene Structure 1938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTTCCACTTTTTTCATCAAGACTCTCAAGTCAACCTCTTTCTCACTTTGTGTGCTTCTACTCCTGCAACCGCTCCTAATTAATGGTCATGGAGGCGAAGACCATGACAGCAATAGCAGCAGCGACGAGCACGAAGTTCTGCATTCGAAAAGCTTGCTGTTGGTGAAAGTATGGTGTTTGATAATTTTACTCGTGACCACCTTCATTGGTGGTATCTCTCCATATTTTTATCGATGGAATGAAAACTTTCTTCTCTTGGGCACTCAATTTGCGGGTGGTGTTTTTCTCGGTACCTCTTTGATGCACTTCTTGAGCGATTCAGCTGAGACATTCGGAGGCCTTACGACCAAAACGTACCCTTTCGCATTCATGCTAGCTTCGGCTGGTTATATGCTAACCATGTTTGGCGATTGCGTGGTTATGCTTGTGACGAGGTCTAGTGAAACAGAAGCTAGAGTTGAAGTGGAGGAGGGAAGGGTTGATGTGGAGCATGAGGACAAGGAAGTTCCAATTGGAGATGGGGTCAACCCAGTTTTCTTGAAGACAACTTCTTTTGGAGACACCATACTTCTTATTCTTGCCCTGTGTTTCCATTCAATTTTTGAGGGTATTGCTGTTGGAGTTGCAGATACAAAGGCAGATGCATGGAGGAATCTATGGACAATATCATTACACAAGATTTTTGCAGCCGTTGCAATGGGAATTGCATTACTGAGGATGCTACCAAAGAGAGCATTTCTAGTAACTGCAGCTTATTCTTTTGCTTTTGCTGTTTCTAGTCCCATTGGAGTAGGCATAGGGATTGCCATTGATGCTACAACTCAAGGAGCTGTAGCTGATTGGATCTATGCAATTTCCATGGGACTTGCTTGTGGGGTTTTTGTCTACGTTGCAATCAACCACCTCATAGCCAAAGGGTTTAAACCACAAACCAAATGTTACTTTGACACTCCTGCTTTCAAGTTTCTTGCTGTGCTTCTTGGGGTGGGAGTCATAGCAGTAGTTATGATCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

340

Amino Acids

36.91

Weight (kDa)

5.56

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	55 - 336	1.1e-48	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	2 cut(s)	74, 275
AclWI	GGATC	1 cut(s)	854
AdeI	CACNNNGTG	1 cut(s)	53
AfaI	GTAC	2 cut(s)	295, 359
AgsI	TTSAA	4 cut(s)	464, 544, 600, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	7 cut(s)	156, 326, 380, 455, 755, 833, 839
AluI	AGCT	7 cut(s)	156, 326, 380, 455, 755, 833, 839
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	323, 555
AlwI	GGATC	1 cut(s)	854
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	120, 123, 689, 752
AseI	ATTAAT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	108, 551
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	132, 135, 701, 764
BccI	CCATC	2 cut(s)	231, 515
BceAI	ACGGC	1 cut(s)	677
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BcoDI	GTCTC	2 cut(s)	323, 555
BfaI	CTAG	5 cut(s)	377, 441, 456, 743, 780
BfmI	CTRYAG	2 cut(s)	750, 834
BisI	GCNGC	4 cut(s)	121, 124, 690, 753
BlsI	GCNGC	4 cut(s)	122, 125, 691, 754
BmiI	GGNNCC	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	4 cut(s)	294, 634, 711, 805
BmtI	GCTAGC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	108, 551
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	14, 334, 810
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	861
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	1 cut(s)	726
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	318, 707
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	132, 135, 701, 764
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	768, 879
BsmAI	GTCTC	2 cut(s)	323, 555
BsmFI	GGGAC	2 cut(s)	768, 879
BsmI	GAATGC	2 cut(s)	145, 368
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	135, 266
Bsp143I	GATC	2 cut(s)	846, 1011
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	2 cut(s)	74, 275
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	319, 708
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	2 cut(s)	846, 1011
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	158, 378
BstDEI	CTNAG	2 cut(s)	327, 716
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	726
BstKTI	GATC	2 cut(s)	849, 1014
BstMAI	GTCTC	2 cut(s)	323, 555
BstMBI	GATC	2 cut(s)	846, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 695, 815
BstSFI	CTRYAG	2 cut(s)	750, 834
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	4 cut(s)	132, 135, 701, 764
BstV2I	GAAGAC	2 cut(s)	108, 551
BstX2I	RGATCY	1 cut(s)	846
BstYI	RGATCY	1 cut(s)	846
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	1 cut(s)	726
Cac8I	GCNNGC	2 cut(s)	158, 378
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	294, 358
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	7 cut(s)	92, 107, 373, 403, 494, 648, 862
CviQI	GTAC	2 cut(s)	294, 358
DdeI	CTNAG	2 cut(s)	327, 716
DpnI	GATC	2 cut(s)	848, 1013
DpnII	GATC	2 cut(s)	846, 1011
DraI	TTTAAA	1 cut(s)	925
DraIII	CACNNNGTG	1 cut(s)	53
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	861
Eco147I	AGGCCT	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	861
EcoT22I	ATGCAT	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	7 cut(s)	95, 110, 376, 406, 497, 651, 865
FaqI	GGGAC	2 cut(s)	768, 879
FatI	CATG	7 cut(s)	91, 106, 372, 402, 493, 647, 861
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	4 cut(s)	121, 124, 690, 753
FokI	GGATG	1 cut(s)	733
Fsp4HI	GCNGC	4 cut(s)	121, 124, 690, 753
FspBI	CTAG	5 cut(s)	377, 441, 456, 743, 780
GluI	GCNGC	4 cut(s)	121, 124, 690, 753
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	7 cut(s)	95, 110, 376, 406, 497, 651, 865
HincII	GTYRAC	2 cut(s)	36, 529
HindII	GTYRAC	2 cut(s)	36, 529
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	4 cut(s)	25, 320, 655, 993
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	36, 529, 889
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	4 cut(s)	22, 196, 313, 541
Hpy8I	GTNNAC	3 cut(s)	36, 529, 889
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	214, 471
HpyCH4IV	ACGT	2 cut(s)	356, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 695, 815
HpyF3I	CTNAG	2 cut(s)	327, 716
HpySE526I	ACGT	2 cut(s)	356, 891
Hsp92II	CATG	7 cut(s)	95, 110, 376, 406, 497, 651, 865
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	846, 1011
LmnI	GCTCC	3 cut(s)	81, 490, 830
LpnPI	CCDG	6 cut(s)	80, 372, 546, 599, 969, 1000
Lsp1109I	GCAGC	4 cut(s)	132, 135, 701, 764
LweI	GCATC	4 cut(s)	294, 634, 711, 805
MaeI	CTAG	5 cut(s)	377, 441, 456, 743, 780
MaeII	ACGT	2 cut(s)	356, 891
MaeIII	GTNAC	4 cut(s)	196, 430, 745, 941
MalI	GATC	2 cut(s)	848, 1013
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	846, 1011
MboII	GAAGA	3 cut(s)	113, 245, 556
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	846
MhlI	GDGCHC	2 cut(s)	135, 266
MluCI	AATT	7 cut(s)	81, 186, 269, 513, 600, 705, 855
MlyI	GAGTC	2 cut(s)	19, 1002
MmeI	TCCRAC	1 cut(s)	601
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	84, 924, 1021
MspA1I	CMGCKG	1 cut(s)	326
MssI	GTTTAAAC	1 cut(s)	925
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	145, 368
MwoI	GCNNNNNNNGC	3 cut(s)	120, 695, 815
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	2 cut(s)	846, 1011
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	7 cut(s)	95, 110, 376, 406, 497, 651, 865
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	196, 430
NsiI	ATGCAT	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	2 cut(s)	145, 368
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	320, 655
PflFI	GACNNNGTC	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	122, 125, 691, 754
PleI	GAGTC	2 cut(s)	19, 1001
PmeI	GTTTAAAC	1 cut(s)	925
PpsI	GAGTC	2 cut(s)	19, 1001
PshBI	ATTAAT	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	846
PsyI	GACNNNGTC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	295, 359
RsaNI	GTAC	2 cut(s)	294, 358
SaqAI	TTAA	3 cut(s)	84, 924, 1021
SatI	GCNGC	4 cut(s)	121, 124, 690, 753
Sau3AI	GATC	2 cut(s)	846, 1011
SchI	GAGTC	2 cut(s)	19, 1002
SduI	GDGCHC	2 cut(s)	135, 266
SfaNI	GCATC	4 cut(s)	294, 634, 711, 805
SfcI	CTRYAG	2 cut(s)	750, 834
SfuI	TTCGAA	1 cut(s)	149
SmlI	CTYRAG	3 cut(s)	29, 313, 825
SmoI	CTYRAG	3 cut(s)	29, 313, 825
Sse9I	AATT	7 cut(s)	81, 186, 269, 513, 600, 705, 855
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	74, 275
SspMI	CTAG	5 cut(s)	377, 441, 456, 743, 780
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	861
TaiI	ACGT	2 cut(s)	359, 894
TaqI	TCGA	2 cut(s)	149, 235
TasI	AATT	7 cut(s)	81, 186, 269, 513, 600, 705, 855
TfiI	GAWTC	2 cut(s)	320, 655
Tru1I	TTAA	3 cut(s)	84, 924, 1021
Tru9I	TTAA	3 cut(s)	84, 924, 1021
TseFI	GTSAC	2 cut(s)	196, 430
TseI	GCWGC	4 cut(s)	120, 123, 689, 752
Tsp45I	GTSAC	2 cut(s)	196, 430
TspDTI	ATGAA	4 cut(s)	7, 196, 258, 361
Tth111I	GACNNNGTC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	888
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	5 cut(s)	377, 441, 456, 743, 780
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.