Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Forward (+)

4908592 .. 4910944

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G072000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCCATCCCTTTCATTAAGACTCTCAACTCAACCTGTGTTTTAGTTTCTTTGCTTCTACTCCTGCAACCGTTTCTAGTCAAGTGTCACGGCGGCGAAGAACATGACAGTGGTAGCGGCACTGAGGACGAACATAAAGTTCTGCATTCAAAAGGCTTGGTTTTGGTGAAAGTATGGTGTTTGATTATTCTACTGGTGAGCACTTTCGCGGGTGGGATCTCCCCCTACTTCTACCGATGGAACGAAAGCTTTCTTCTCTTGGGCACGCAATTTGCTGGTGGGGTTTTTCTTGGTACCTCTTTGATGCATTTCTTGAGTGACTCAGCTGAGACATTTGGTGACCTTACCACCAAAACATACCCTTTTGCATTCATGCTAGCATCGGCTGGGTATCTGCTAACCATGCTCGGAGATTGCATCGTGCTATTCGTGACAAGTTCCAGCGAAAAAGAAGCTAGAGTGGAAGTGGAGGAGGGAAGGACTGATGCAGAGCATGATCATAAGGAAGATGAAGACGGCGTCAGCCCGGTTTTCTTGAAGACATCGTCTTTCGGAGACACCATACTTCTCATCATTGCCCTTTGTTTTCATTCAGTTTTTGAGGGTATTGCTGTTGGAGTTGCAGATACAAAGGCAGATGCATGGAGGAATCTGTGGACGATATCATTGCACAAGATTTTTGCGGCCATTGCTATGGGGATAGCGTTACTGAGAATGCTACCTAAGAGGGCATTGCTGGTGACTGCAGCTTACTCTTTTGCTTTTGCTGTTTCTAGCCCCTTTGGAGTAGGCATAGGCATTGCCATTGATGCCACAACTCAAGGACGTGTAGCTGATTGGATTTATGCCATTTCCATGGGGCTTGCTTGTGGGGTTTTCATCTATGTTGCAATCAACCATCTCATTGCCAAAGGCTTCAAGCCACAAGCCAAATCTTACTTTGACACTCCAGCTTTCAAGTTTCTTGCTGTACTTCTTGGGGTGGGAGTGATAGCAGTTGTTATGATCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

340

Amino Acids

36.73

Weight (kDa)

5.67

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	1 cut(s)	212
AciI	CCGC	4 cut(s)	96, 120, 212, 686
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	2 cut(s)	298, 975
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	4 cut(s)	153, 541, 922, 961
AjiI	CACGTC	1 cut(s)	830
AluBI	AGCT	6 cut(s)	252, 329, 458, 752, 836, 956
AluI	AGCT	6 cut(s)	252, 329, 458, 752, 836, 956
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	326, 552
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	687
ApeKI	GCWGC	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	4 cut(s)	181, 211, 353, 754
AsuNHI	GCTAGC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	522, 548
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	761
BccI	CCATC	3 cut(s)	17, 234, 909
BceAI	ACGGC	2 cut(s)	109, 535
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	326, 552
BfaI	CTAG	4 cut(s)	80, 380, 459, 777
BfmI	CTRYAG	1 cut(s)	747
BisI	GCNGC	4 cut(s)	97, 121, 687, 750
BlsI	GCNGC	4 cut(s)	98, 122, 688, 751
Bme1390I	CCNGG	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	830
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	6 cut(s)	297, 392, 429, 478, 631, 802
BmtI	GCTAGC	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	522, 548
BpmI	CTGGAG	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	337, 807
BpuMI	CCSGG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	858
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	6 cut(s)	576, 668, 690, 734, 801, 906
BseDI	CCNNGG	1 cut(s)	858
BseGI	GGATG	1 cut(s)	9
BseMI	GCAATG	6 cut(s)	576, 668, 690, 734, 801, 906
BseMII	CTCAG	4 cut(s)	117, 321, 339, 704
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	761
BseYI	CCCAGC	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	689
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	326, 552
BsmI	GAATGC	3 cut(s)	148, 371, 723
BsnI	GGCC	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	206, 269
Bsp143I	GATC	3 cut(s)	219, 499, 1008
Bsp19I	CCATGG	1 cut(s)	858
BspACI	CCGC	4 cut(s)	96, 120, 212, 686
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	4 cut(s)	118, 322, 338, 705
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	6 cut(s)	576, 668, 690, 734, 801, 906
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	858
BssMI	GATC	3 cut(s)	219, 499, 1008
BssNI	GRCGYC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	858
Bst4CI	ACNGT	2 cut(s)	75, 113
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	269, 381, 867
BstDEI	CTNAG	5 cut(s)	126, 325, 330, 713, 726
BstDSI	CCRYGG	1 cut(s)	858
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	3 cut(s)	222, 502, 1011
BstMAI	GTCTC	2 cut(s)	326, 552
BstMBI	GATC	3 cut(s)	219, 499, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 692, 812
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	761
BstV2I	GAAGAC	2 cut(s)	522, 548
BstX2I	RGATCY	1 cut(s)	219
BstXI	CCANNNNNNTGG	2 cut(s)	697, 859
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	689
BtgI	CCRYGG	1 cut(s)	858
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	118, 123
Cac8I	GCNNGC	3 cut(s)	269, 381, 867
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	297, 974
CviAII	CATG	6 cut(s)	107, 376, 406, 497, 645, 859
CviQI	GTAC	2 cut(s)	297, 974
DdeI	CTNAG	5 cut(s)	126, 325, 330, 713, 726
DpnI	GATC	3 cut(s)	221, 501, 1010
DpnII	GATC	3 cut(s)	219, 499, 1008
EaeI	YGGCCR	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	858
Eco32I	GATATC	1 cut(s)	666
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	2 cut(s)	312, 646
ErhI	CCWWGG	1 cut(s)	858
FaeI	CATG	6 cut(s)	110, 379, 409, 500, 648, 862
FatI	CATG	6 cut(s)	106, 375, 405, 496, 644, 858
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	97, 121, 687, 750
Fsp4HI	GCNGC	4 cut(s)	97, 121, 687, 750
FspBI	CTAG	4 cut(s)	80, 380, 459, 777
GluI	GCNGC	4 cut(s)	97, 121, 687, 750
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	6 cut(s)	110, 379, 409, 500, 648, 862
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	3 cut(s)	25, 323, 652
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	4 cut(s)	181, 211, 353, 754
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	2 cut(s)	413, 557
Hpy188III	TCNNGA	3 cut(s)	316, 433, 538
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	2 cut(s)	75, 113
HpyCH4IV	ACGT	1 cut(s)	829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 692, 812
HpyF3I	CTNAG	5 cut(s)	126, 325, 330, 713, 726
HpySE526I	ACGT	1 cut(s)	829
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	6 cut(s)	110, 379, 409, 500, 648, 862
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	219, 499, 1008
Lsp1109I	GCAGC	1 cut(s)	761
LweI	GCATC	6 cut(s)	297, 392, 429, 478, 631, 802
MaeI	CTAG	4 cut(s)	80, 380, 459, 777
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	6 cut(s)	89, 320, 341, 433, 708, 742
MalI	GATC	3 cut(s)	221, 501, 1010
MboI	GATC	3 cut(s)	219, 499, 1008
MboII	GAAGA	5 cut(s)	113, 248, 521, 527, 553
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	206, 269
MluCI	AATT	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	19, 317
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	7 cut(s)	121, 310, 466, 469, 598, 642, 723
Mph1103I	ATGCAT	2 cut(s)	312, 646
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	21, 1018
MslI	CAYNNNNRTG	3 cut(s)	111, 695, 857
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	530
Mva1269I	GAATGC	3 cut(s)	148, 371, 723
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	406, 692, 812
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	858
NdeII	GATC	3 cut(s)	219, 499, 1008
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	6 cut(s)	110, 379, 409, 500, 648, 862
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	5 cut(s)	89, 320, 341, 433, 742
NsiI	ATGCAT	2 cut(s)	312, 646
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	3 cut(s)	148, 371, 723
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	652
PflFI	GACNNNGTC	2 cut(s)	521, 547
PkrI	GCNGC	4 cut(s)	98, 122, 688, 751
PleI	GAGTC	2 cut(s)	19, 317
PpsI	GAGTC	2 cut(s)	19, 317
PspEI	GGTNACC	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	2 cut(s)	521, 547
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	298, 975
RsaNI	GTAC	2 cut(s)	297, 974
RseI	CAYNNNNRTG	3 cut(s)	111, 695, 857
SaqAI	TTAA	2 cut(s)	21, 1018
SatI	GCNGC	4 cut(s)	97, 121, 687, 750
Sau3AI	GATC	3 cut(s)	219, 499, 1008
SchI	GAGTC	2 cut(s)	19, 317
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	206, 269
SfaNI	GCATC	6 cut(s)	297, 392, 429, 478, 631, 802
SfcI	CTRYAG	1 cut(s)	747
SmiMI	CAYNNNNRTG	3 cut(s)	111, 695, 857
SmlI	CTYRAG	2 cut(s)	316, 822
SmoI	CTYRAG	2 cut(s)	316, 822
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	4 cut(s)	96, 120, 212, 686
SspMI	CTAG	4 cut(s)	80, 380, 459, 777
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	2 cut(s)	75, 113
TaiI	ACGT	1 cut(s)	832
TasI	AATT	1 cut(s)	272
TatI	WGTACW	1 cut(s)	973
TauI	GCSGC	3 cut(s)	99, 123, 689
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	21, 1018
Tru9I	TTAA	2 cut(s)	21, 1018
TscAI	CASTG	2 cut(s)	118, 130
TseFI	GTSAC	5 cut(s)	89, 320, 341, 433, 742
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	5 cut(s)	89, 320, 341, 433, 742
TspDTI	ATGAA	5 cut(s)	7, 364, 528, 581, 871
TspRI	CASTG	2 cut(s)	118, 130
Tth111I	GACNNNGTC	2 cut(s)	521, 547
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	80, 380, 459, 777
Zsp2I	ATGCAT	2 cut(s)	312, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.