Rorug05G0375700

Zinc transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
50695054 .. 50695392
339 bp
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UTR
Exon/CDS
Intron
Rorug05G0375700.1

Sequence Viewer

Length: 339 bp
ATGAAGCACACAACAACAGACTTCGAAGACAGCCCTTCCATAGGCAGTGTACTCACCTATGCGACTAATAATGGCGGATCAAATGGTTCTTCAGGTACTATTCAACTTGAGATAGAGAAAGATGGTTTGTATGGTAAAGAGCTTCTAACTTGGGCAGAAGGATGTTCTAGCAAATTGTCCAACTTACCGATCTCTACCGTAACTGTCAAGTCCCACAACAAAGTTGAAGTGTTTGCTCTCCTCGCCACCGATTTACAGCGTGTTGTCTCTAATTTTCCGAGTCAATTCAACATGGGCAATATCCTCAACATAGCTGTCGATAATGAAATGGTGAACTAA

Protein Analysis

112

Amino Acids

12.05

Weight (kDa)

4.77

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59520
fragaria_vesca FvH4_3g36840
malus_domestica MD11G1096400.v1.1
prunus_persica Prupe.6G072000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065941
rosa_laevigata RLG00000035831
rosa_multiflora Rmu_sc0001473.1_g000013
rosa_roxburghii Rroxscaffold_1G00015030
rosa_rugosa Rorug05G0375700
rosa_samantha Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana Rw5G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 51, 97
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 104, 227, 289
AluBI AGCT 2 cut(s) 142, 314
AluI AGCT 2 cut(s) 142, 314
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 33
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 77, 189
BspACI CCGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 24
BssMI GATC 2 cut(s) 77, 189
Bst4CI ACNGT 2 cut(s) 199, 205
BstBI TTCGAA 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 2 cut(s) 80, 192
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 2 cut(s) 77, 189
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Csp6I GTAC 2 cut(s) 50, 96
CviAII CATG 1 cut(s) 292
CviJI RGCY 3 cut(s) 33, 142, 314
CviKI_1 RGCY 3 cut(s) 33, 142, 314
CviQI GTAC 2 cut(s) 50, 96
DpnI GATC 2 cut(s) 79, 191
DpnII GATC 2 cut(s) 77, 189
EciI GGCGGA 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 39
FaeI CATG 1 cut(s) 295
FaiI YATR 5 cut(s) 41, 60, 132, 293, 311
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 291
FokI GGATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 168
Hin1II CATG 1 cut(s) 295
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 50, 334
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 50, 334
HpyAV CCTTC 2 cut(s) 45, 152
HpyCH4III ACNGT 2 cut(s) 199, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 2 cut(s) 77, 189
LpnPI CCDG 1 cut(s) 78
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 79, 191
MboI GATC 2 cut(s) 77, 189
MboII GAAGA 2 cut(s) 38, 81
MluCI AATT 3 cut(s) 173, 271, 284
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 2 cut(s) 251, 314
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 77, 189
NlaIII CATG 1 cut(s) 295
NspV TTCGAA 1 cut(s) 24
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
RsaI GTAC 2 cut(s) 51, 97
RsaNI GTAC 2 cut(s) 50, 96
Sau3AI GATC 2 cut(s) 77, 189
SchI GAGTC 1 cut(s) 289
SetI ASST 4 cut(s) 59, 97, 144, 316
SfuI TTCGAA 1 cut(s) 24
SgeI CNNG 9 cut(s) 105, 119, 162, 180, 220, 254, 272, 291, 304
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 173, 271, 284
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 199, 205
TaqI TCGA 2 cut(s) 24, 318
TasI AATT 3 cut(s) 173, 271, 284
TatI WGTACW 1 cut(s) 49
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 17, 339
TspRI CASTG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 39
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.