Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Reverse (-)

72009810 .. 72011660

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTTCCACTTTTTTCAGCAAGACTCTCAAGTCAACCTCTATCTCACTTTGTGTGCTTCTACTCCTGCAACCGCTCCTAATTAATGGTCATGGAGGCGAAGACCATGACAGCAATAGCAGCAGCGACGAGCACGAAGTTCTGCATTCGAAAAGTTTGCTGTTGGTGAAAGTATGGTGTCTGATAATTTTACTCTTGACCACCTTCATTGGTGGTATCTCTCCATATTTTTATCGATGGAATGAAAACTTTCTTCTCTTGGGCACTCAATTTGCGGGTGGTGTTTTTCTCGGTGCCTCTTTGATGCACTTCTTGAGCGATTCAGCTGAGACATTCGGAGGCCTTACGACCAAAACGTACCCTTTCGCATTCATGCTAGCTTCGGCTGGTTATATGCTAACCATGTTTGGCGATTGCGTGGTTATGCTTGTGACGAGGTCTAGTGAAACAGAAGCTAGAGTTGAAGTGGAGGAGGGAAGGGTTGATGTGGAGCATGAGGACAAGGAAGTTCCAATTGGAGATGGGGTCAACCCAGTTTTCTTGAAGACAACTTCTTTTGGAGACACCATACTTCTTATTCTTGCCCTGTATACAAAGGCAGATGCATGGAGGAATCTATGGACAATATCATTACACAAGATTTTTGCAGCCGTTGCAATGGGAATTGCATTACTGAGGATGCTACCAAAGAGAGCATTTCTAGTAACTGCAGCTTATTCTTTTGCTTTCGCTGTTTCTAGTCCCATTGGAGTAGGCATAGGGATTGCCATTGATGCCACAACTCAAGGAGCTGTAGCTGATTGGATCTATGCAATTTCCATGGGACTTGCTTGTGGGGTTTTTGTCTACTTTGCAATCAACCACCTCATAGCCAATGGGTTTAAACCACAAACCAAATGTTACTTTGACACTCCTGCTTTCAAGTTCCTTGCTGTGCTTCTTGGGGTGGGAGTCATAGCAGTAGTTATGATCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

326

Amino Acids

35.49

Weight (kDa)

5.59

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	55 - 165	1.3e-15	ZIP Zinc transporter
Zip	PF02535	197 - 322	2.1e-21	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	2 cut(s)	590, 846
AciI	CCGC	2 cut(s)	74, 275
AclWI	GGATC	1 cut(s)	812
AdeI	CACNNNGTG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	464, 544, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	6 cut(s)	326, 380, 455, 713, 791, 797
AluI	AGCT	6 cut(s)	326, 380, 455, 713, 791, 797
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	323, 555
AlwI	GGATC	1 cut(s)	812
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	120, 123, 647, 710
AseI	ATTAAT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	108, 551
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	132, 135, 659, 722
BccI	CCATC	2 cut(s)	231, 515
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BcoDI	GTCTC	2 cut(s)	323, 555
BfaI	CTAG	5 cut(s)	377, 441, 456, 701, 738
BfmI	CTRYAG	2 cut(s)	708, 792
BisI	GCNGC	4 cut(s)	121, 124, 648, 711
BlsI	GCNGC	4 cut(s)	122, 125, 649, 712
BmiI	GGNNCC	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	4 cut(s)	294, 592, 669, 763
BmtI	GCTAGC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	108, 551
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	14, 334, 768
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	819
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	1 cut(s)	684
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	318, 665
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	132, 135, 659, 722
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	726, 837
BsmAI	GTCTC	2 cut(s)	323, 555
BsmFI	GGGAC	2 cut(s)	726, 837
BsmI	GAATGC	2 cut(s)	145, 368
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	135, 266
Bsp143I	GATC	2 cut(s)	804, 969
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	2 cut(s)	74, 275
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	319, 666
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	2 cut(s)	804, 969
BssNAI	GTATAC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	819
Bst1107I	GTATAC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	327, 674
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	1 cut(s)	684
BstKTI	GATC	2 cut(s)	807, 972
BstMAI	GTCTC	2 cut(s)	323, 555
BstMBI	GATC	2 cut(s)	804, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 653, 773
BstSFI	CTRYAG	2 cut(s)	708, 792
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	4 cut(s)	132, 135, 659, 722
BstV2I	GAAGAC	2 cut(s)	108, 551
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BstZ17I	GTATAC	1 cut(s)	591
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	819
BtsCI	GGATG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	7 cut(s)	92, 107, 373, 403, 494, 606, 820
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	327, 674
DpnI	GATC	2 cut(s)	806, 971
DpnII	GATC	2 cut(s)	804, 969
DraI	TTTAAA	1 cut(s)	883
DraIII	CACNNNGTG	1 cut(s)	53
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	819
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	7 cut(s)	95, 110, 376, 406, 497, 609, 823
FaqI	GGGAC	2 cut(s)	726, 837
FatI	CATG	7 cut(s)	91, 106, 372, 402, 493, 605, 819
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	590, 846
Fnu4HI	GCNGC	4 cut(s)	121, 124, 648, 711
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	4 cut(s)	121, 124, 648, 711
FspBI	CTAG	5 cut(s)	377, 441, 456, 701, 738
GluI	GCNGC	4 cut(s)	121, 124, 648, 711
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	7 cut(s)	95, 110, 376, 406, 497, 609, 823
HincII	GTYRAC	2 cut(s)	36, 529
HindII	GTYRAC	2 cut(s)	36, 529
HinfI	GANTC	4 cut(s)	25, 320, 613, 951
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	36, 529, 591, 847
Hpy188I	TCNGA	2 cut(s)	183, 338
Hpy188III	TCNNGA	3 cut(s)	196, 313, 541
Hpy8I	GTNNAC	4 cut(s)	36, 529, 591, 847
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	214, 471
HpyCH4IV	ACGT	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 653, 773
HpyF3I	CTNAG	2 cut(s)	327, 674
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	7 cut(s)	95, 110, 376, 406, 497, 609, 823
Kzo9I	GATC	2 cut(s)	804, 969
LmnI	GCTCC	3 cut(s)	81, 490, 788
LpnPI	CCDG	6 cut(s)	80, 372, 546, 599, 927, 958
Lsp1109I	GCAGC	4 cut(s)	132, 135, 659, 722
LweI	GCATC	4 cut(s)	294, 592, 669, 763
MaeI	CTAG	5 cut(s)	377, 441, 456, 701, 738
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	430, 703, 899
MalI	GATC	2 cut(s)	806, 971
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	804, 969
MboII	GAAGA	3 cut(s)	113, 245, 556
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	2 cut(s)	135, 266
MluCI	AATT	6 cut(s)	81, 186, 269, 513, 663, 813
MlyI	GAGTC	2 cut(s)	19, 960
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	84, 882, 979
MspA1I	CMGCKG	1 cut(s)	326
MssI	GTTTAAAC	1 cut(s)	883
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	145, 368
MwoI	GCNNNNNNNGC	3 cut(s)	120, 653, 773
NcoI	CCATGG	1 cut(s)	819
NdeII	GATC	2 cut(s)	804, 969
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	7 cut(s)	95, 110, 376, 406, 497, 609, 823
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	2 cut(s)	145, 368
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	320, 613
PflFI	GACNNNGTC	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	122, 125, 649, 712
PleI	GAGTC	2 cut(s)	19, 959
PmeI	GTTTAAAC	1 cut(s)	883
PpsI	GAGTC	2 cut(s)	19, 959
PshBI	ATTAAT	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	804
PsyI	GACNNNGTC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	84, 882, 979
SatI	GCNGC	4 cut(s)	121, 124, 648, 711
Sau3AI	GATC	2 cut(s)	804, 969
SchI	GAGTC	2 cut(s)	19, 960
SduI	GDGCHC	2 cut(s)	135, 266
SfaNI	GCATC	4 cut(s)	294, 592, 669, 763
SfcI	CTRYAG	2 cut(s)	708, 792
SfuI	TTCGAA	1 cut(s)	149
SmlI	CTYRAG	3 cut(s)	29, 313, 783
SmoI	CTYRAG	3 cut(s)	29, 313, 783
Sse9I	AATT	6 cut(s)	81, 186, 269, 513, 663, 813
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	74, 275
SspMI	CTAG	5 cut(s)	377, 441, 456, 701, 738
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	819
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	149, 235
TasI	AATT	6 cut(s)	81, 186, 269, 513, 663, 813
TfiI	GAWTC	2 cut(s)	320, 613
Tru1I	TTAA	3 cut(s)	84, 882, 979
Tru9I	TTAA	3 cut(s)	84, 882, 979
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	4 cut(s)	120, 123, 647, 710
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	196, 258, 361
Tth111I	GACNNNGTC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	84
XmiI	GTMKAC	2 cut(s)	590, 846
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	5 cut(s)	377, 441, 456, 701, 738
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.