Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016510

Physical Location & Seq

Genomic Coordinates Reverse (-)

31558576 .. 31560437

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTTCCACTTTTCTCATCTTCAAGACTCTCAAGTCAACCTCTGTCTCACTTTGTGCGCTTCTACTCCTGCAACCGCTCCTAATCAATGGTCATGGAGGCGTAGACCATGACAGCGATAGCAGCAGCGACGAGCACGTAGTTCTGCATTCGAAGAGCTTGGTGTTGGTGAAAGTATGGTGTTTGATCATTTTACTTGTGACCACCTTCATTGGTGGCATATCTCCCTATTTTTATCGATGGAACGAAAGCTTTCTTCTCTTGGGAACTCAATTTGCTGGTGGTGTTTTTCTCGGTACCTCTTTGATGCACTTCTTGAGCGATGCAGCTGAGACATTCGGAGACCTTACCACCAAAACGTACCCTTTCGCATTCATGCTAGCTTCGGCTGGTTATATGCTGACCATGTTTGGCGATTGCGTGGTGATGTTTGTGACTAGGCCCAGTGAAACAGAAGCTAGAGTTGAGGTGGAGGAGGGAATTAGGGTTGAGGATGAGGAGCATGGGGATAAGGAAGTTCCAACTGGACATGATGAGCTCAACCCAGCTTTCTTGAAAACAACTTCGTTTGGAGACACCATACTTCTTATTCTTGCGCTGTGTTTCCATTCAGTTTTCGAGGGTATTGCTGTTGGAGTTGCAGATACAAAGGGAGATGCATGGAGGAATCTATGGACGATATCATTACACAAGATTTTTGCAGCCGTTGCAATGGGAATTGCATTACTGAGGATGCTACCAAAGAGAGCATTTCTAGTAACTGCAGCTTATTCTTTTGCTTTTGCTGTTTCAAGTCCAGTTGGAGTAGGCATAGGGATTGCCATTGATGCCACAACTGAAGGAGCTGCAGCTGATTGGGTATATGCAATTTCCATGGGACTTGCTTGTGGAGTTTTCGTCTATGTTGCAATCAATCATCTCATTGCCAAAGGGTTTAAACCACAAACCAAATGCGACTTTGACACTCCATCTTACAAGTTTCTTGCTGTGCTTCTTGGAGTGGGAGTCATAGCAGTTGTTATGATCTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

345

Amino Acids

37.22

Weight (kDa)

5.22

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	56 - 340	2.8e-52	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59520
fragaria_vesca	FvH4_3g36840
malus_domestica	MD11G1096400.v1.1
prunus_persica	Prupe.6G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0065941
rosa_laevigata	RLG00000035831
rosa_multiflora	Rmu_sc0001473.1_g000013
rosa_roxburghii	Rroxscaffold_1G00015030
rosa_rugosa	Rorug05G0375700
rosa_samantha	Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana	Rw5G040670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	858
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	298, 362
AgsI	TTSAA	3 cut(s)	25, 556, 792
Alw21I	GWGCWC	2 cut(s)	138, 540
Alw26I	GTCTC	4 cut(s)	52, 326, 336, 567
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	7 cut(s)	123, 126, 326, 701, 764, 845, 848
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	61, 598
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	181, 436
AsuII	TTCGAA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	138, 540
BbvI	GCAGC	7 cut(s)	135, 138, 338, 713, 776, 832, 860
BccI	CCATC	2 cut(s)	234, 976
BceAI	ACGGC	1 cut(s)	689
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	4 cut(s)	52, 326, 336, 567
BfaI	CTAG	4 cut(s)	380, 438, 459, 755
BfmI	CTRYAG	2 cut(s)	762, 846
BisI	GCNGC	7 cut(s)	124, 127, 327, 702, 765, 846, 849
BlsI	GCNGC	7 cut(s)	125, 128, 328, 703, 766, 847, 850
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	5 cut(s)	297, 313, 646, 723, 817
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	17, 337
Bsa29I	ATCGAT	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	4 cut(s)	882, 912, 990, 1020
Bse1I	ACTGG	3 cut(s)	444, 529, 797
Bse3DI	GCAATG	2 cut(s)	717, 921
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	2 cut(s)	499, 738
BseMI	GCAATG	2 cut(s)	717, 921
BseMII	CTCAG	2 cut(s)	321, 719
BseNI	ACTGG	3 cut(s)	444, 529, 797
BseRI	GAGGAG	2 cut(s)	488, 512
BseXI	GCAGC	7 cut(s)	135, 138, 338, 713, 776, 832, 860
BseYI	CCCAGC	1 cut(s)	544
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	138, 540
BslFI	GGGAC	1 cut(s)	891
BsmAI	GTCTC	4 cut(s)	52, 326, 336, 567
BsmFI	GGGAC	1 cut(s)	891
BsmI	GAATGC	2 cut(s)	148, 371
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	138, 540
Bsp143I	GATC	2 cut(s)	186, 1023
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	322, 720
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	2 cut(s)	766, 850
BspOI	GCTAGC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	717, 921
BsrI	ACTGG	3 cut(s)	444, 529, 797
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	2 cut(s)	186, 1023
BssT1I	CCWWGG	1 cut(s)	873
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	330, 728
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	499, 738
BstHHI	GCGC	2 cut(s)	61, 598
BstKTI	GATC	2 cut(s)	189, 1026
BstMAI	GTCTC	4 cut(s)	52, 326, 336, 567
BstMBI	GATC	2 cut(s)	186, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 707, 827
BstSFI	CTRYAG	2 cut(s)	762, 846
BstV1I	GCAGC	7 cut(s)	135, 138, 338, 713, 776, 832, 860
Bsu15I	ATCGAT	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	873
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	499, 738
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	61, 598
Cfr13I	GGNCC	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	297, 361
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	8 cut(s)	95, 110, 376, 406, 503, 530, 660, 874
CviQI	GTAC	2 cut(s)	297, 361
DdeI	CTNAG	2 cut(s)	330, 728
DpnI	GATC	2 cut(s)	188, 1025
DpnII	GATC	2 cut(s)	186, 1023
DraI	TTTAAA	1 cut(s)	937
DraIII	CACNNNGTG	1 cut(s)	56
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	8 cut(s)	98, 113, 379, 409, 506, 533, 663, 877
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	8 cut(s)	94, 109, 375, 405, 502, 529, 659, 873
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	7 cut(s)	124, 127, 327, 702, 765, 846, 849
FokI	GGATG	2 cut(s)	506, 745
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	7 cut(s)	124, 127, 327, 702, 765, 846, 849
FspBI	CTAG	4 cut(s)	380, 438, 459, 755
GlaI	GCGC	2 cut(s)	60, 597
GluI	GCNGC	7 cut(s)	124, 127, 327, 702, 765, 846, 849
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	2 cut(s)	61, 598
Hin1II	CATG	8 cut(s)	98, 113, 379, 409, 506, 533, 663, 877
Hin6I	GCGC	2 cut(s)	59, 596
HinP1I	GCGC	2 cut(s)	59, 596
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	3 cut(s)	28, 667, 1005
HphI	GGTGA	2 cut(s)	181, 436
Hpy166II	GTNNAC	2 cut(s)	39, 106
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	3 cut(s)	25, 316, 553
Hpy8I	GTNNAC	2 cut(s)	39, 106
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	217, 833
HpyCH4IV	ACGT	2 cut(s)	138, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 707, 827
HpyF3I	CTNAG	2 cut(s)	330, 728
HpySE526I	ACGT	2 cut(s)	138, 359
Hsp92II	CATG	8 cut(s)	98, 113, 379, 409, 506, 533, 663, 877
HspAI	GCGC	2 cut(s)	59, 596
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	186, 1023
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	84, 499, 842
LpnPI	CCDG	8 cut(s)	83, 264, 375, 457, 510, 558, 810, 1012
Lsp1109I	GCAGC	7 cut(s)	135, 138, 338, 713, 776, 832, 860
LweI	GCATC	5 cut(s)	297, 313, 646, 723, 817
MaeI	CTAG	4 cut(s)	380, 438, 459, 755
MaeII	ACGT	2 cut(s)	138, 359
MaeIII	GTNAC	3 cut(s)	199, 433, 757
MalI	GATC	2 cut(s)	188, 1025
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	186, 1023
MboII	GAAGA	3 cut(s)	13, 166, 248
MhlI	GDGCHC	2 cut(s)	138, 540
MluCI	AATT	4 cut(s)	272, 480, 717, 867
MlyI	GAGTC	2 cut(s)	22, 1014
MmeI	TCCRAC	3 cut(s)	545, 613, 781
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	936
MspA1I	CMGCKG	2 cut(s)	329, 851
MssI	GTTTAAAC	1 cut(s)	937
Mva1269I	GAATGC	2 cut(s)	148, 371
MwoI	GCNNNNNNNGC	3 cut(s)	123, 707, 827
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	2 cut(s)	186, 1023
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	8 cut(s)	98, 113, 379, 409, 506, 533, 663, 877
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	199, 433
NsiI	ATGCAT	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	2 cut(s)	148, 371
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	667
PkrI	GCNGC	7 cut(s)	125, 128, 328, 703, 766, 847, 850
PleI	GAGTC	2 cut(s)	22, 1013
PmeI	GTTTAAAC	1 cut(s)	937
PpsI	GAGTC	2 cut(s)	22, 1013
Ppu21I	YACGTR	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	441
PstI	CTGCAG	2 cut(s)	766, 850
PvuII	CAGCTG	2 cut(s)	329, 851
RsaI	GTAC	2 cut(s)	298, 362
RsaNI	GTAC	2 cut(s)	297, 361
SacI	GAGCTC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	936
SatI	GCNGC	7 cut(s)	124, 127, 327, 702, 765, 846, 849
Sau3AI	GATC	2 cut(s)	186, 1023
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	2 cut(s)	22, 1014
SduI	GDGCHC	2 cut(s)	138, 540
SfaNI	GCATC	5 cut(s)	297, 313, 646, 723, 817
SfcI	CTRYAG	2 cut(s)	762, 846
SfuI	TTCGAA	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	32, 316
SmoI	CTYRAG	2 cut(s)	32, 316
Sse9I	AATT	4 cut(s)	272, 480, 717, 867
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	4 cut(s)	380, 438, 459, 755
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	873
TaiI	ACGT	2 cut(s)	141, 362
TaqI	TCGA	3 cut(s)	152, 238, 618
TasI	AATT	4 cut(s)	272, 480, 717, 867
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	199, 433
TseI	GCWGC	7 cut(s)	123, 126, 326, 701, 764, 845, 848
Tsp45I	GTSAC	2 cut(s)	199, 433
TspDTI	ATGAA	2 cut(s)	199, 364
TspRI	CASTG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	380, 438, 459, 755
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.