RLG00000035831

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016510
Physical Location & Seq
Reverse (-)
72393391 .. 72394991
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035831

Sequence Viewer

Length: 1023 bp
ATGGCTTCCACTTTTTTCATCAATACTCTCAAGTCAACCTCTCTCTCACTTTGTGTGCTTCTACTCCTGCAACCGCTCCTAATTAATGGTCATGGAGGCGAAGACCATGACAGCAATAGCAGCAGCGACGAGCACGAAGTTCTGCATTCGAAAAGCTTGCTGTTGGTGAAAGTATGGTGTTTGATAATTTTACTCGTGACCACCTTCATTGGTGGTATCTCTCCATATTTTTATCGATGGAATGAAAACTTTCTTCTCTTGGGCACTCAATTTGCGGGTGGTGTTTTTCTCGGTACCTCTTTGATGCACTTCTTGAGCGATTCAGCTGAGACATTCGGAGGCCTTACGACCAAAACGTACCCTTTCGCATTCATGCTAGCTTCGGCTGGTTATATGCTAACCATGTTTGGCGATTGCGTGGTTATGCTTGTGACGAGGTCTACTGAAACAGAAGCTAGAGTTGAAGTGGAGGAGGGAAGGGTTGATGTGGAGCATGAGGATAAGGAAGTTCCAATTGGAGATGGGGTCAACCCAGTTTTCTTGAAGACAACTTCTTTTGGAGACACCATACTTCTTATTCTTGCCCTGTGTTTCCATTCAATTTTTGAGGGTATTGCTGTTGGAGTTGCAGATACAAAGGCAGATGCATGGAGGAATCTGTGGACAATATCATTACACAAGATTTTTGCAGCCGTTGCAATGGGAATTGCATTACTGAGGATGCTACCAAAGAGAGCATTTCTAGTAACTGCAGCTTATTCTTTTGCTTTTGCTGTTTCTAGTCCCATTGGAGTAGGCATAGGGATTGCCATTGATGCCACAACTCAAGGAGCTGTAGCTGATTGGATCTATGCAATTTCCATGGGACTTGCTTGTGGGGTTTTTGTCTACGTTGCAATCAACCATCTCATAGCCAAAGGGTTTAAACCACAAACCAAATGTTACTTTGACACTCCTGCTTTCAAGTTTCTTGCTGTGCTTCTTGGAGTGGGAGTCATAGCAGTAGTTATGATCTGGGATTAA

Protein Analysis

341

Amino Acids

36.88

Weight (kDa)

5.43

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 55 - 336 1.9e-48 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59520
fragaria_vesca FvH4_3g36840
malus_domestica MD11G1096400.v1.1
prunus_persica Prupe.6G072000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065941
rosa_laevigata RLG00000035831
rosa_multiflora Rmu_sc0001473.1_g000013
rosa_roxburghii Rroxscaffold_1G00015030
rosa_rugosa Rorug05G0375700
rosa_samantha Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana Rw5G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 2 cut(s) 440, 888
AciI CCGC 2 cut(s) 74, 275
AclWI GGATC 1 cut(s) 854
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 2 cut(s) 295, 359
AgsI TTSAA 4 cut(s) 464, 544, 600, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 7 cut(s) 156, 326, 380, 455, 755, 833, 839
AluI AGCT 7 cut(s) 156, 326, 380, 455, 755, 833, 839
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 323, 555
AlwI GGATC 1 cut(s) 854
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 4 cut(s) 120, 123, 689, 752
AseI ATTAAT 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 178
AsuII TTCGAA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 293
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 108, 551
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 132, 135, 701, 764
BccI CCATC 3 cut(s) 231, 515, 912
BceAI ACGGC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcoDI GTCTC 2 cut(s) 323, 555
BfaI CTAG 4 cut(s) 377, 456, 743, 780
BfmI CTRYAG 2 cut(s) 750, 834
BisI GCNGC 4 cut(s) 121, 124, 690, 753
BlsI GCNGC 4 cut(s) 122, 125, 691, 754
BmiI GGNNCC 1 cut(s) 295
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 4 cut(s) 294, 634, 711, 805
BmtI GCTAGC 1 cut(s) 380
BmuI ACTGGG 1 cut(s) 527
BpiI GAAGAC 2 cut(s) 108, 551
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 3 cut(s) 14, 334, 810
Bsa29I ATCGAT 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 861
BsaXI ACNNNNNCTCC 4 cut(s) 510, 540, 978, 1008
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 705
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 861
BseGI GGATG 1 cut(s) 726
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 2 cut(s) 318, 707
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 4 cut(s) 132, 135, 701, 764
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 2 cut(s) 768, 879
BsmAI GTCTC 2 cut(s) 323, 555
BsmFI GGGAC 2 cut(s) 768, 879
BsmI GAATGC 2 cut(s) 145, 368
BsnI GGCC 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 135, 266
Bsp143I GATC 2 cut(s) 846, 1011
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 2 cut(s) 74, 275
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 319, 708
BspDI ATCGAT 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 754
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 1 cut(s) 854
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 861
BssMI GATC 2 cut(s) 846, 1011
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 861
Bst2BI CACGAG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 158, 378
BstDEI CTNAG 2 cut(s) 327, 716
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 1 cut(s) 726
BstKTI GATC 2 cut(s) 849, 1014
BstMAI GTCTC 2 cut(s) 323, 555
BstMBI GATC 2 cut(s) 846, 1011
BstMWI GCNNNNNNNGC 3 cut(s) 120, 695, 815
BstSFI CTRYAG 2 cut(s) 750, 834
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 4 cut(s) 132, 135, 701, 764
BstV2I GAAGAC 2 cut(s) 108, 551
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
Bsu15I ATCGAT 1 cut(s) 235
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 1 cut(s) 726
Cac8I GCNNGC 2 cut(s) 158, 378
ClaI ATCGAT 1 cut(s) 235
Csp6I GTAC 2 cut(s) 294, 358
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 7 cut(s) 92, 107, 373, 403, 494, 648, 862
CviQI GTAC 2 cut(s) 294, 358
DdeI CTNAG 2 cut(s) 327, 716
DpnI GATC 2 cut(s) 848, 1013
DpnII GATC 2 cut(s) 846, 1011
DraI TTTAAA 1 cut(s) 925
DraIII CACNNNGTG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 861
Eco147I AGGCCT 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 7 cut(s) 95, 110, 376, 406, 497, 651, 865
FaqI GGGAC 2 cut(s) 768, 879
FatI CATG 7 cut(s) 91, 106, 372, 402, 493, 647, 861
FauI CCCGC 1 cut(s) 268
FblI GTMKAC 2 cut(s) 440, 888
Fnu4HI GCNGC 4 cut(s) 121, 124, 690, 753
FokI GGATG 1 cut(s) 733
Fsp4HI GCNGC 4 cut(s) 121, 124, 690, 753
FspBI CTAG 4 cut(s) 377, 456, 743, 780
GluI GCNGC 4 cut(s) 121, 124, 690, 753
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 7 cut(s) 95, 110, 376, 406, 497, 651, 865
HincII GTYRAC 2 cut(s) 36, 529
HindII GTYRAC 2 cut(s) 36, 529
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 3 cut(s) 320, 655, 993
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 5 cut(s) 36, 441, 529, 663, 889
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 3 cut(s) 196, 313, 541
Hpy8I GTNNAC 5 cut(s) 36, 441, 529, 663, 889
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 214, 471
HpyCH4IV ACGT 2 cut(s) 356, 891
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 695, 815
HpyF3I CTNAG 2 cut(s) 327, 716
HpySE526I ACGT 2 cut(s) 356, 891
Hsp92II CATG 7 cut(s) 95, 110, 376, 406, 497, 651, 865
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 846, 1011
LmnI GCTCC 3 cut(s) 81, 490, 830
LpnPI CCDG 6 cut(s) 80, 372, 546, 599, 969, 1000
Lsp1109I GCAGC 4 cut(s) 132, 135, 701, 764
LweI GCATC 4 cut(s) 294, 634, 711, 805
MaeI CTAG 4 cut(s) 377, 456, 743, 780
MaeII ACGT 2 cut(s) 356, 891
MaeIII GTNAC 4 cut(s) 196, 430, 745, 941
MalI GATC 2 cut(s) 848, 1013
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 846, 1011
MboII GAAGA 3 cut(s) 113, 245, 556
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 2 cut(s) 135, 266
MluCI AATT 7 cut(s) 81, 186, 269, 513, 600, 705, 855
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 1 cut(s) 601
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 3 cut(s) 84, 924, 1021
MspA1I CMGCKG 1 cut(s) 326
MssI GTTTAAAC 1 cut(s) 925
MunI CAATTG 1 cut(s) 513
Mva1269I GAATGC 2 cut(s) 145, 368
MwoI GCNNNNNNNGC 3 cut(s) 120, 695, 815
NcoI CCATGG 1 cut(s) 861
NdeII GATC 2 cut(s) 846, 1011
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 7 cut(s) 95, 110, 376, 406, 497, 651, 865
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 196, 430
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 1 cut(s) 149
PceI AGGCCT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PctI GAATGC 2 cut(s) 145, 368
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 320, 655
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 4 cut(s) 122, 125, 691, 754
PleI GAGTC 1 cut(s) 1001
PmeI GTTTAAAC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 1001
PshBI ATTAAT 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 846
PsyI GACNNNGTC 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 295, 359
RsaNI GTAC 2 cut(s) 294, 358
SaqAI TTAA 3 cut(s) 84, 924, 1021
SatI GCNGC 4 cut(s) 121, 124, 690, 753
Sau3AI GATC 2 cut(s) 846, 1011
SchI GAGTC 1 cut(s) 1002
SduI GDGCHC 2 cut(s) 135, 266
SfaNI GCATC 4 cut(s) 294, 634, 711, 805
SfcI CTRYAG 2 cut(s) 750, 834
SfuI TTCGAA 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 29, 313, 825
SmoI CTYRAG 3 cut(s) 29, 313, 825
Sse9I AATT 7 cut(s) 81, 186, 269, 513, 600, 705, 855
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 2 cut(s) 74, 275
SspMI CTAG 4 cut(s) 377, 456, 743, 780
StuI AGGCCT 1 cut(s) 342
StyI CCWWGG 1 cut(s) 861
TaiI ACGT 2 cut(s) 359, 894
TaqI TCGA 2 cut(s) 149, 235
TasI AATT 7 cut(s) 81, 186, 269, 513, 600, 705, 855
TfiI GAWTC 2 cut(s) 320, 655
Tru1I TTAA 3 cut(s) 84, 924, 1021
Tru9I TTAA 3 cut(s) 84, 924, 1021
TseFI GTSAC 2 cut(s) 196, 430
TseI GCWGC 4 cut(s) 120, 123, 689, 752
Tsp45I GTSAC 2 cut(s) 196, 430
TspDTI ATGAA 4 cut(s) 7, 196, 258, 361
Tth111I GACNNNGTC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 84
XmiI GTMKAC 2 cut(s) 440, 888
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 4 cut(s) 377, 456, 743, 780
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.