MD11G1096400.v1.1

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016510
Physical Location & Seq
Forward (+)
8019292 .. 8021216
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1096400.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGCTTCCATTCCTTTCGTTAAGTCAACCTTTCTTTTAGCATCTGTGCTCCTCTTATCCCTGCAACCATTCCTAGTCAACGGTCATGGCGGCAGCAACCATGATGATAGCGGCGGACATAAAGTTGATCTGCATACGAAAGGCTTGGTTTTGGTGAAAGTATGGTGCTTGATTATTCTACTGGTGAGCACTTTCGCCGGTGGCATCTCCCCCTACTTTTATCGATGGAACGAAAGCTTTCTTCTCATGGGGACGCAATTCGCTGGTGGGGTTTTTCTTGGTACCTCTTTGATGCACTTCTTGAGTGACGCAGATGCGACATTTCGTGAGCTTACCACGAAAACATACCCTTTCGCATTCATGCTAGCGTCGGCTGGTTATCTGCTAACCATGCTTGGAGATTGCGTTGTGCTGTTTGTGACGAGGTCGGGTGAAAGAGAAGCTAGAGTGGAAGTGGAGGAGGGAAGGAATGCTGCACTGCATGATCATAAGGAAGATGGAGAGGACGACAACCCAGTTTTCTTGAAGACATCGTCTTTCGGAGACACCATACTTCTCATCCTTGCGCTGTGTTTTCATTCAGTTTTTGAGGGCATTGCTGTTGGAGTTGCAGATACAAAGTCAGATGCATGGAGGAACCTATGGACAATATCACTACACAAGATTTTTGCAGCCATTGCTATGGGGATTGCACTACTGAGGATGCTACCCAAAAGAGCATTCTTAGTAACTGCAGCTTATTCTTTTGCTTTTGCTGTTTCTAGTCCCATTGGAGTAGGCATCGGCATTGCCATCAACGCCACAACTCAAGGACATGTAGCTGATTGGATATATGCCATTTCAATGGGACTTGCTTGTGGAGTTTTCATCTATGTTGCAATCAACCATCTCATTGCCAAAGGGTTTAAACCACAAGCTAAATGCTACTTCGATACTCCAGCTTTCAAGTTCGTTGCTGTGCTTCTTGGAGTGGGAGTCATAGCAATTGTTATGATCTGGGATTAA

Protein Analysis

335

Amino Acids

36.21

Weight (kDa)

6.4

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 51 - 330 7.3e-50 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59520
fragaria_vesca FvH4_3g36840
malus_domestica MD11G1096400.v1.1
prunus_persica Prupe.6G072000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065941
rosa_laevigata RLG00000035831
rosa_multiflora Rmu_sc0001473.1_g000013
rosa_roxburghii Rroxscaffold_1G00015030
rosa_rugosa Rorug05G0375700
rosa_samantha Rh5AG433900 Rh5BG450400 Rh5CG472800 Rh5DG464100
rosa_wichuraiana Rw5G040670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 3 cut(s) 90, 111, 114
AfaI GTAC 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 3 cut(s) 526, 843, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 7 cut(s) 237, 331, 443, 737, 821, 917, 941
AluI AGCT 7 cut(s) 237, 331, 443, 737, 821, 917, 941
Alw21I GWGCWC 2 cut(s) 51, 191
Alw26I GTCTC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 93, 473, 671, 734
Asp700I GAANNNNTTC 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 568
AsuHPI GGTGA 3 cut(s) 166, 196, 443
AsuNHI GCTAGC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 2 cut(s) 51, 191
BbvI GCAGC 4 cut(s) 105, 460, 683, 746
BccI CCATC 4 cut(s) 219, 491, 800, 894
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 4 cut(s) 74, 365, 444, 762
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 6 cut(s) 91, 94, 112, 474, 672, 735
BlsI GCNGC 6 cut(s) 92, 95, 113, 475, 673, 736
BmiI GGNNCC 2 cut(s) 283, 638
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 7 cut(s) 50, 213, 282, 304, 616, 693, 789
BmtI GCTAGC 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 921
BpuEI CTTGAG 2 cut(s) 322, 792
Bsa29I ATCGAT 1 cut(s) 223
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 960, 990
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 186, 515
Bse3DI GCAATG 4 cut(s) 594, 675, 786, 891
BseCI ATCGAT 1 cut(s) 223
BseGI GGATG 2 cut(s) 558, 708
BseMI GCAATG 4 cut(s) 594, 675, 786, 891
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 2 cut(s) 186, 515
BseRI GAGGAG 2 cut(s) 41, 473
BseXI GCAGC 4 cut(s) 105, 460, 683, 746
BsgI GTGCAG 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 51, 191
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 3 cut(s) 265, 750, 861
BsmAI GTCTC 1 cut(s) 537
BsmFI GGGAC 3 cut(s) 265, 750, 861
BsmI GAATGC 3 cut(s) 356, 475, 719
Bsp1286I GDGCHC 2 cut(s) 51, 191
Bsp143I GATC 3 cut(s) 127, 484, 993
BspACI CCGC 3 cut(s) 90, 111, 114
BspCNI CTCAG 1 cut(s) 690
BspDI ATCGAT 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 283, 638
BspMAI CTGCAG 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 4 cut(s) 594, 675, 786, 891
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 186, 515
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 3 cut(s) 127, 484, 993
Bst4CI ACNGT 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 698, 724
BstF5I GGATG 2 cut(s) 558, 708
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 3 cut(s) 130, 487, 996
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 3 cut(s) 127, 484, 993
BstMWI GCNNNNNNNGC 3 cut(s) 391, 677, 797
BstNSI RCATGY 1 cut(s) 818
BstSFI CTRYAG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 105, 460, 683, 746
BstV2I GAAGAC 1 cut(s) 533
BstXI CCANNNNNNTGG 2 cut(s) 682, 844
Bsu15I ATCGAT 1 cut(s) 223
BsuTUI ATCGAT 1 cut(s) 223
BtsCI GGATG 2 cut(s) 558, 708
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 223
CseI GACGC 3 cut(s) 262, 317, 357
Csp6I GTAC 1 cut(s) 282
CviAII CATG 8 cut(s) 86, 101, 247, 361, 391, 482, 630, 815
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 698, 724
DpnI GATC 3 cut(s) 129, 486, 995
DpnII GATC 3 cut(s) 127, 484, 993
DraI TTTAAA 1 cut(s) 907
EciI GGCGGA 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 631
FaeI CATG 8 cut(s) 89, 104, 250, 364, 394, 485, 633, 818
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 3 cut(s) 265, 750, 861
FatI CATG 8 cut(s) 85, 100, 246, 360, 390, 481, 629, 814
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 6 cut(s) 91, 94, 112, 474, 672, 735
FokI GGATG 2 cut(s) 545, 715
Fsp4HI GCNGC 6 cut(s) 91, 94, 112, 474, 672, 735
FspBI CTAG 4 cut(s) 74, 365, 444, 762
GlaI GCGC 1 cut(s) 567
GluI GCNGC 6 cut(s) 91, 94, 112, 474, 672, 735
GsuI CTGGAG 1 cut(s) 921
HapII CCGG 1 cut(s) 198
HgaI GACGC 3 cut(s) 262, 317, 357
HhaI GCGC 1 cut(s) 568
Hin1II CATG 8 cut(s) 89, 104, 250, 364, 394, 485, 633, 818
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 2 cut(s) 27, 79
HindII GTYRAC 2 cut(s) 27, 79
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 1 cut(s) 975
HpaII CCGG 1 cut(s) 198
HphI GGTGA 3 cut(s) 166, 196, 443
Hpy166II GTNNAC 2 cut(s) 27, 79
Hpy188I TCNGA 2 cut(s) 542, 625
Hpy188III TCNNGA 3 cut(s) 301, 326, 523
Hpy8I GTNNAC 2 cut(s) 27, 79
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 391, 677, 797
HpyF3I CTNAG 2 cut(s) 698, 724
Hsp92II CATG 8 cut(s) 89, 104, 250, 364, 394, 485, 633, 818
HspAI GCGC 1 cut(s) 566
KpnI GGTACC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 127, 484, 993
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 74, 167, 211, 249, 360, 528, 951, 982
Lsp1109I GCAGC 4 cut(s) 105, 460, 683, 746
LweI GCATC 7 cut(s) 50, 213, 282, 304, 616, 693, 789
MaeI CTAG 4 cut(s) 74, 365, 444, 762
MaeIII GTNAC 3 cut(s) 305, 418, 727
MalI GATC 3 cut(s) 129, 486, 995
MboI GATC 3 cut(s) 127, 484, 993
MboII GAAGA 3 cut(s) 233, 506, 538
MfeI CAATTG 1 cut(s) 984
MhlI GDGCHC 2 cut(s) 51, 191
MluCI AATT 2 cut(s) 257, 984
MlyI GAGTC 1 cut(s) 984
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 9 cut(s) 62, 295, 417, 451, 454, 496, 583, 627, 693
Mph1103I ATGCAT 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 3 cut(s) 21, 906, 1003
MslI CAYNNNNRTG 2 cut(s) 680, 842
MspI CCGG 1 cut(s) 198
MssI GTTTAAAC 1 cut(s) 907
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 3 cut(s) 356, 475, 719
MwoI GCNNNNNNNGC 3 cut(s) 391, 677, 797
NdeII GATC 3 cut(s) 127, 484, 993
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 8 cut(s) 89, 104, 250, 364, 394, 485, 633, 818
NlaIV GGNNCC 2 cut(s) 283, 638
NmuCI GTSAC 2 cut(s) 305, 418
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 1 cut(s) 818
PciI ACATGT 1 cut(s) 814
PctI GAATGC 3 cut(s) 356, 475, 719
PdmI GAANNNNTTC 1 cut(s) 237
PflFI GACNNNGTC 2 cut(s) 424, 532
PkrI GCNGC 6 cut(s) 92, 95, 113, 475, 673, 736
PleI GAGTC 1 cut(s) 983
PmeI GTTTAAAC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 983
PscI ACATGT 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 283, 638
PstI CTGCAG 1 cut(s) 736
PsyI GACNNNGTC 2 cut(s) 424, 532
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 2 cut(s) 680, 842
SaqAI TTAA 3 cut(s) 21, 906, 1003
SatI GCNGC 6 cut(s) 91, 94, 112, 474, 672, 735
Sau3AI GATC 3 cut(s) 127, 484, 993
SchI GAGTC 1 cut(s) 984
SduI GDGCHC 2 cut(s) 51, 191
SfaNI GCATC 7 cut(s) 50, 213, 282, 304, 616, 693, 789
SfcI CTRYAG 1 cut(s) 732
SgrAI CRCCGGYG 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 680, 842
SmlI CTYRAG 2 cut(s) 301, 807
SmoI CTYRAG 2 cut(s) 301, 807
Sse9I AATT 2 cut(s) 257, 984
SsiI CCGC 3 cut(s) 90, 111, 114
SspMI CTAG 4 cut(s) 74, 365, 444, 762
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 223, 930
TasI AATT 2 cut(s) 257, 984
TauI GCSGC 2 cut(s) 93, 114
Tru1I TTAA 3 cut(s) 21, 906, 1003
Tru9I TTAA 3 cut(s) 21, 906, 1003
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 2 cut(s) 305, 418
TseI GCWGC 4 cut(s) 93, 473, 671, 734
Tsp45I GTSAC 2 cut(s) 305, 418
TspDTI ATGAA 3 cut(s) 349, 566, 856
TspRI CASTG 1 cut(s) 483
Tth111I GACNNNGTC 2 cut(s) 424, 532
XceI RCATGY 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 4 cut(s) 74, 365, 444, 762
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.