Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013159

Physical Location & Seq

Genomic Coordinates Reverse (-)

24011000 .. 24013056

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGAAGAAACTTACCATCGTTCCTAGTTCTTTTCGGTTATTATCAATCGGTTCTTATGTTGAACTCATCGAAGCCAACGGTCGAGATCGACTGTTTTGTAGAGGAAGAGTGCTTCATGCTCATTTAGTGACATCTGGTATTGCTCGCTTGACGAGAATTGCAGCTAAGCTTGTAACTTTTTATGTTGAATGTGGGAAAGTTCTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATGTGTTGTCATGATTGGGGCTTGTGCTCGAAATGGGTATTACCAGGAGTCTTTGGATTTCTTCAGAGAAATGTACAAAGACGGTTTAAAACTTGATGCTTTCATTGTTCCTAGTCTTCTTAAAGCCAGTCGCAATCTGCTTGATAGAGAATTCGGGAAGATGATACATTGTCTTGTGCTGAAGTTTTCGTATGAGTCTGATGCTTTTATAGTTAGCTCGCTTATTGATATGTACTCGAAGTTTGGGGAGGTGGGGAATGCGAGGAAGGTGTTCAGTGATTTGGGTGAACAGGATTTGGTCGTGTTCAATGCTATGATCTCTGGTTATGCTAATAATAGCCAAGCAGATGAAGCATTGAACTTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATGTTATCACTTGGAATGCTCTAATTTCAGGGTTCTCGCATATGAGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATGTGTTTGGATGGTTACAAGCCCGACGTTGTGTCCTGGACTTCTATTATATCAGGCCTTGTACATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTGTATCCAAACTCTGCTACGATCATAACTCTATTGCCTGCTTGTACCACACTTGCATATATGAAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGGTTTGTTAGAAGTGCTTTGCTTGACATGTACGGCAAATGTGGCTTCATATCAGAAGCAATGATCTTGTTTCGCAAGACGCCAAAGAAGACAACAGTTACTTTCAACTCGATGATCTTCTGTTATGCGAATCACGGGCTCGCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGAGAGAAACTCGACCACTTAACATTCACGGCCATCCTCACAGCCTGCAGCCACGCAGGGTTAACTGATCTTGGACAAAATTTGTTCCTTTTGATGCAAAACAAGTACAGGATCGTGCCGAGATTGGAGCATTATGCTTGTATGGTGGATCTTCTCGGCCGAGCAGGGAAGCTTGTTGAGGCCTATGAGATGATCAAGGCTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTAGCTGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTGCAGCAAAGCACTTAGCAGAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACCAGTTTATATGCCAATGCTGGTAGTTGGGAAAGTGTTGTAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGGTTTCTAGGCAGCAGCTGGGTAGAAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

534

Amino Acids

59.95

Weight (kDa)

8.55

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	181 - 228	3.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	182 - 229	1.9e-13	PPR repeat family
PPR	PF01535	184 - 214	2.4e-06	PPR repeat
PPR_3	PF13812	205 - 263	1.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	251 - 298	3.9e-10	PPR repeat family
PPR_2	PF13041	353 - 400	1.7e-10	PPR repeat family
PPR_1	PF12854	353 - 381	2.8e-07	PPR repeat
PPR	PF01535	355 - 381	1.9e-07	PPR repeat
E_motif	PF20431	470 - 532	1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59600
fragaria_vesca	FvH4_3g36900
malus_domestica	MD11G1095800.v1.1
prunus_persica	Prupe.6G071300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281
rosa_laevigata	RLG00000035845
rosa_multiflora	Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014840
rosa_rugosa	Rorug05G0376700
rosa_samantha	Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100
rosa_wichuraiana	Rw5G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	1268, 1305
AcoI	YGGCCR	2 cut(s)	1179, 1306
AcsI	RAATTY	2 cut(s)	401, 1228
AcuI	CTGAAG	2 cut(s)	298, 452
AcyI	GRCGYC	1 cut(s)	1046
AfaI	GTAC	6 cut(s)	326, 485, 792, 895, 998, 1256
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	5 cut(s)	62, 188, 559, 610, 1072
AhdI	GACNNNNNGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	294, 764
Alw21I	GWGCWC	2 cut(s)	280, 1458
AlwI	GGATC	2 cut(s)	1268, 1305
AlwNI	CAGNNNCTG	1 cut(s)	1587
AoxI	GGCC	4 cut(s)	784, 1179, 1306, 1329
ApeKI	GCWGC	6 cut(s)	161, 1197, 1394, 1436, 1581, 1584
ApoI	RAATTY	2 cut(s)	401, 1228
Asp700I	GAANNNNTTC	2 cut(s)	218, 521
AsuHPI	GGTGA	2 cut(s)	548, 628
BanII	GRGCYC	2 cut(s)	1107, 1458
BbsI	GAAGAC	2 cut(s)	359, 1061
Bbv12I	GWGCWC	2 cut(s)	280, 1458
BbvI	GCAGC	6 cut(s)	173, 1209, 1381, 1448, 1593, 1596
BccI	CCATC	4 cut(s)	23, 734, 1132, 1190
BceAI	ACGGC	2 cut(s)	1015, 1194
BciT130I	CCWGG	2 cut(s)	296, 766
BciVI	GTATCC	1 cut(s)	864
BclI	TGATCA	2 cut(s)	1132, 1341
BfaI	CTAG	5 cut(s)	24, 203, 363, 956, 1577
BfmI	CTRYAG	1 cut(s)	1195
BfuI	GTATCC	1 cut(s)	864
BisI	GCNGC	6 cut(s)	162, 1198, 1395, 1437, 1582, 1585
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	6 cut(s)	163, 1199, 1396, 1438, 1583, 1586
Bme1390I	CCNGG	2 cut(s)	296, 766
BmeRI	GACNNNNNGTC	1 cut(s)	760
BmiI	GGNNCC	1 cut(s)	1362
BmrFI	CCNGG	2 cut(s)	296, 766
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	5 cut(s)	196, 337, 442, 811, 1233
BmuI	ACTGGG	1 cut(s)	644
BpiI	GAAGAC	2 cut(s)	359, 1061
BplI	GAGNNNNNCTC	2 cut(s)	1143, 1175
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	1046
BsaJI	CCNNGG	1 cut(s)	1146
Bse1I	ACTGG	4 cut(s)	378, 639, 955, 1494
Bse3DI	GCAATG	1 cut(s)	1032
BseBI	CCWGG	2 cut(s)	296, 766
BseDI	CCNNGG	1 cut(s)	1146
BseGI	GGATG	3 cut(s)	257, 745, 1182
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	705, 1455, 1485
BseNI	ACTGG	4 cut(s)	378, 639, 955, 1494
BseX3I	CGGCCG	1 cut(s)	1306
BseXI	GCAGC	6 cut(s)	173, 1209, 1381, 1448, 1593, 1596
BseYI	CCCAGC	1 cut(s)	1587
Bsh1285I	CGRYCG	2 cut(s)	82, 1309
BshFI	GGCC	4 cut(s)	786, 1181, 1308, 1331
BsiEI	CGRYCG	2 cut(s)	82, 1309
BsiHKAI	GWGCWC	2 cut(s)	280, 1458
BsiSI	CCGG	1 cut(s)	1364
BsmI	GAATGC	2 cut(s)	514, 670
BsnI	GGCC	4 cut(s)	786, 1181, 1308, 1331
Bsp1286I	GDGCHC	3 cut(s)	280, 1107, 1458
Bsp1407I	TGTACA	2 cut(s)	324, 790
Bsp1720I	GCTNAGC	1 cut(s)	165
BspANI	GGCC	4 cut(s)	786, 1181, 1308, 1331
BspCNI	CTCAG	3 cut(s)	706, 1456, 1484
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	1362
BspMAI	CTGCAG	1 cut(s)	1199
BspPI	GGATC	2 cut(s)	1268, 1305
BsrDI	GCAATG	1 cut(s)	1032
BsrGI	TGTACA	2 cut(s)	324, 790
BsrI	ACTGG	4 cut(s)	378, 639, 955, 1494
BssECI	CCNNGG	1 cut(s)	1146
BssNI	GRCGYC	1 cut(s)	1046
Bst2UI	CCWGG	2 cut(s)	296, 766
Bst4CI	ACNGT	6 cut(s)	80, 93, 335, 935, 1063, 1600
Bst6I	CTCTTC	2 cut(s)	100, 1553
BstACI	GRCGYC	1 cut(s)	1046
BstAPI	GCANNNNNTGC	1 cut(s)	1433
BstAUI	TGTACA	2 cut(s)	324, 790
BstC8I	GCNNGC	6 cut(s)	145, 470, 888, 1107, 1195, 1425
BstDEI	CTNAG	5 cut(s)	165, 714, 1447, 1464, 1471
BstDSI	CCRYGG	1 cut(s)	1146
BstF5I	GGATG	3 cut(s)	257, 745, 1182
BstMCI	CGRYCG	2 cut(s)	82, 1309
BstMWI	GCNNNNNNNGC	7 cut(s)	602, 821, 1008, 1115, 1360, 1391, 1433
BstNI	CCWGG	2 cut(s)	296, 766
BstNSI	RCATGY	1 cut(s)	997
BstSCI	CCNGG	2 cut(s)	294, 764
BstSFI	CTRYAG	1 cut(s)	1195
BstV1I	GCAGC	6 cut(s)	173, 1209, 1381, 1448, 1593, 1596
BstV2I	GAAGAC	2 cut(s)	359, 1061
BstX2I	RGATCY	1 cut(s)	1297
BstYI	RGATCY	1 cut(s)	1297
BstZI	CGGCCG	1 cut(s)	1306
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	4 cut(s)	786, 1181, 1308, 1331
BtgI	CCRYGG	1 cut(s)	1146
BtsCI	GGATG	3 cut(s)	257, 745, 1182
BtsIMutI	CAGTG	2 cut(s)	532, 948
Cac8I	GCNNGC	6 cut(s)	145, 470, 888, 1107, 1195, 1425
CaiI	CAGNNNCTG	1 cut(s)	1587
CciI	TCATGA	1 cut(s)	261
CseI	GACGC	1 cut(s)	1054
Csp6I	GTAC	6 cut(s)	325, 484, 791, 894, 997, 1255
CviAII	CATG	5 cut(s)	116, 262, 845, 994, 1417
CviQI	GTAC	6 cut(s)	325, 484, 791, 894, 997, 1255
DdeI	CTNAG	5 cut(s)	165, 714, 1447, 1464, 1471
DraI	TTTAAA	2 cut(s)	339, 829
DriI	GACNNNNNGTC	1 cut(s)	760
EaeI	YGGCCR	2 cut(s)	1179, 1306
EagI	CGGCCG	1 cut(s)	1306
Eam1104I	CTCTTC	2 cut(s)	100, 1553
Eam1105I	GACNNNNNGTC	1 cut(s)	760
EarI	CTCTTC	2 cut(s)	100, 1553
Ecl136II	GAGCTC	1 cut(s)	1456
EclXI	CGGCCG	1 cut(s)	1306
Eco147I	AGGCCT	2 cut(s)	786, 1331
Eco24I	GRGCYC	2 cut(s)	1107, 1458
Eco52I	CGGCCG	1 cut(s)	1306
Eco53kI	GAGCTC	1 cut(s)	1456
Eco57I	CTGAAG	2 cut(s)	298, 452
EcoICRI	GAGCTC	1 cut(s)	1456
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	294, 764
EcoT38I	GRGCYC	2 cut(s)	1107, 1458
FaeI	CATG	5 cut(s)	119, 265, 848, 997, 1420
FatI	CATG	5 cut(s)	115, 261, 844, 993, 1416
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	2 cut(s)	1132, 1341
Fnu4HI	GCNGC	6 cut(s)	162, 1198, 1395, 1437, 1582, 1585
FokI	GGATG	3 cut(s)	264, 752, 1169
FriOI	GRGCYC	2 cut(s)	1107, 1458
Fsp4HI	GCNGC	6 cut(s)	162, 1198, 1395, 1437, 1582, 1585
FspBI	CTAG	5 cut(s)	24, 203, 363, 956, 1577
GluI	GCNGC	6 cut(s)	162, 1198, 1395, 1437, 1582, 1585
GsaI	CCCAGC	1 cut(s)	1591
HaeIII	GGCC	4 cut(s)	786, 1181, 1308, 1331
HapII	CCGG	1 cut(s)	1364
HgaI	GACGC	1 cut(s)	1054
Hin1I	GRCGYC	1 cut(s)	1046
Hin1II	CATG	5 cut(s)	119, 265, 848, 997, 1420
HincII	GTYRAC	2 cut(s)	840, 1212
HindII	GTYRAC	2 cut(s)	840, 1212
HindIII	AAGCTT	3 cut(s)	167, 813, 1319
HinfI	GANTC	6 cut(s)	299, 446, 718, 928, 1096, 1405
HpaI	GTTAAC	2 cut(s)	840, 1212
HpaII	CCGG	1 cut(s)	1364
HphI	GGTGA	2 cut(s)	548, 628
Hpy166II	GTNNAC	3 cut(s)	539, 840, 1212
Hpy188I	TCNGA	7 cut(s)	317, 451, 715, 804, 1021, 1137, 1491
Hpy188III	TCNNGA	5 cut(s)	83, 203, 262, 406, 722
Hpy8I	GTNNAC	3 cut(s)	539, 840, 1212
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	4 cut(s)	208, 511, 916, 1563
HpyCH4III	ACNGT	6 cut(s)	80, 93, 335, 935, 1063, 1600
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	6 cut(s)	161, 905, 1197, 1246, 1427, 1436
HpyF10VI	GCNNNNNNNGC	7 cut(s)	602, 821, 1008, 1115, 1360, 1391, 1433
HpyF3I	CTNAG	5 cut(s)	165, 714, 1447, 1464, 1471
HpySE526I	ACGT	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	1046
Hsp92II	CATG	5 cut(s)	119, 265, 848, 997, 1420
Ksp22I	TGATCA	2 cut(s)	1132, 1341
KspAI	GTTAAC	2 cut(s)	840, 1212
LmnI	GCTCC	3 cut(s)	1276, 1360, 1420
Lsp1109I	GCAGC	6 cut(s)	173, 1209, 1381, 1448, 1593, 1596
LweI	GCATC	5 cut(s)	196, 337, 442, 811, 1233
MaeI	CTAG	5 cut(s)	24, 203, 363, 956, 1577
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	6 cut(s)	127, 172, 743, 935, 946, 1063
MflI	RGATCY	1 cut(s)	1297
MhlI	GDGCHC	3 cut(s)	280, 1107, 1458
MluCI	AATT	5 cut(s)	156, 401, 672, 796, 1228
MlyI	GAGTC	2 cut(s)	308, 455
MnlI	CCTC	7 cut(s)	95, 204, 493, 507, 1196, 1321, 1554
MroXI	GAANNNNTTC	2 cut(s)	218, 521
MseI	TTAA	6 cut(s)	338, 372, 828, 839, 1169, 1211
MspA1I	CMGCKG	1 cut(s)	1587
MspI	CCGG	1 cut(s)	1364
MspR9I	CCNGG	2 cut(s)	296, 766
Mva1269I	GAATGC	2 cut(s)	514, 670
MvaI	CCWGG	2 cut(s)	296, 766
MwoI	GCNNNNNNNGC	7 cut(s)	602, 821, 1008, 1115, 1360, 1391, 1433
NdeI	CATATG	1 cut(s)	690
NlaIII	CATG	5 cut(s)	119, 265, 848, 997, 1420
NlaIV	GGNNCC	1 cut(s)	1362
NmeAIII	GCCGAG	3 cut(s)	1284, 1293, 1334
NmuCI	GTSAC	2 cut(s)	127, 946
NspI	RCATGY	1 cut(s)	997
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	2 cut(s)	786, 1331
PciI	ACATGT	1 cut(s)	993
PctI	GAATGC	2 cut(s)	514, 670
PdmI	GAANNNNTTC	2 cut(s)	218, 521
PfeI	GAWTC	4 cut(s)	718, 928, 1096, 1405
PfoI	TCCNGGA	1 cut(s)	764
PkrI	GCNGC	6 cut(s)	163, 1199, 1396, 1438, 1583, 1586
PleI	GAGTC	2 cut(s)	307, 454
PpsI	GAGTC	2 cut(s)	307, 454
PscI	ACATGT	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	1458
Psp6I	CCWGG	2 cut(s)	294, 764
PspFI	CCCAGC	1 cut(s)	1587
PspGI	CCWGG	2 cut(s)	294, 764
PspN4I	GGNNCC	1 cut(s)	1362
PstI	CTGCAG	1 cut(s)	1199
PstNI	CAGNNNCTG	1 cut(s)	1587
PsuI	RGATCY	1 cut(s)	1297
PvuII	CAGCTG	1 cut(s)	1587
RsaI	GTAC	6 cut(s)	326, 485, 792, 895, 998, 1256
RsaNI	GTAC	6 cut(s)	325, 484, 791, 894, 997, 1255
SacI	GAGCTC	1 cut(s)	1458
SaqAI	TTAA	6 cut(s)	338, 372, 828, 839, 1169, 1211
SatI	GCNGC	6 cut(s)	162, 1198, 1395, 1437, 1582, 1585
SchI	GAGTC	2 cut(s)	308, 455
ScrFI	CCNGG	2 cut(s)	296, 766
SduI	GDGCHC	3 cut(s)	280, 1107, 1458
SfaNI	GCATC	5 cut(s)	196, 337, 442, 811, 1233
SfcI	CTRYAG	1 cut(s)	1195
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	5 cut(s)	156, 401, 672, 796, 1228
SseBI	AGGCCT	2 cut(s)	786, 1331
SspMI	CTAG	5 cut(s)	24, 203, 363, 956, 1577
SstI	GAGCTC	1 cut(s)	1458
StuI	AGGCCT	2 cut(s)	786, 1331
StyD4I	CCNGG	2 cut(s)	294, 764
TaaI	ACNGT	6 cut(s)	80, 93, 335, 935, 1063, 1600
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	9 cut(s)	69, 82, 88, 222, 280, 488, 1076, 1161, 1458
TasI	AATT	5 cut(s)	156, 401, 672, 796, 1228
TatI	WGTACW	4 cut(s)	324, 483, 790, 1254
TfiI	GAWTC	4 cut(s)	718, 928, 1096, 1405
Tru1I	TTAA	6 cut(s)	338, 372, 828, 839, 1169, 1211
Tru9I	TTAA	6 cut(s)	338, 372, 828, 839, 1169, 1211
TscAI	CASTG	2 cut(s)	532, 955
TseFI	GTSAC	2 cut(s)	127, 946
TseI	GCWGC	6 cut(s)	161, 1197, 1394, 1436, 1581, 1584
Tsp45I	GTSAC	2 cut(s)	127, 946
TspRI	CASTG	2 cut(s)	532, 955
XapI	RAATTY	2 cut(s)	401, 1228
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	997
XmnI	GAANNNNTTC	2 cut(s)	218, 521
XspI	CTAG	5 cut(s)	24, 203, 363, 956, 1577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.