Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013159

Physical Location & Seq

Genomic Coordinates Forward (+)

50973861 .. 50974379

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0376700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATCCGGTTTACATTAGTAGATGATATGTGGAGAGTTTCTCACTTTCATGCCGAGCACAATCACGAGCTTGCTAAGCCAAAACAGAGACCATTTTTAAGATCAAATAGAAAAATGTCTGAAGCTCATAAAGGGGTAATAAAGACCATGCGTGATGCTCGTATAGGGACCATAAAGACATACTCATATTTAGCAGAAGAAGTTGGTGGATCTCAAAATGTTGGGTTTACGAAGAGAGATTGCTATAGTTTTGTGAATAATGAGAAAATGGCTATGTTTGAGGCTGGAGATGCTCAAAGCTTAATCAATCTTTTCAAGCGTAAGAAAACTGAAGATCCTATGTTCTTTTACTCAGTGCAAGTGGATCAAGAAAATCGAATGACAAATTTCTTTTGGAGAGATGGCCGATCAAGACTTGATTATGAGTACTTCAGAGATGTATTAGTCTTTGATACTACATACAAAACCAATAGGTATAACATGATTTGTGCTCCTTTTGTGGCTATTAATAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

172

Amino Acids

20.5

Weight (kDa)

9.34

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59600
fragaria_vesca	FvH4_3g36900
malus_domestica	MD11G1095800.v1.1
prunus_persica	Prupe.6G071300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281
rosa_laevigata	RLG00000035845
rosa_multiflora	Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014840
rosa_rugosa	Rorug05G0376700
rosa_samantha	Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100
rosa_wichuraiana	Rw5G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	217, 329, 372
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	3 cut(s)	141, 351, 415
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	3 cut(s)	70, 125, 300
AluI	AGCT	3 cut(s)	70, 125, 300
Alw21I	GWGCWC	2 cut(s)	60, 493
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	217, 329, 372
AoxI	GGCC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	60, 493
BccI	CCATC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	244
BlpI	GCTNAGC	1 cut(s)	75
BmcAI	AGTACT	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	2 cut(s)	145, 280
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	2 cut(s)	60, 493
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	60, 493
Bsp143I	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
Bsp1720I	GCTNAGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	217, 329, 372
BspTNI	GGTCTC	1 cut(s)	82
BssMI	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
BssSI	CACGAG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	75, 352
BstKTI	GATC	6 cut(s)	6, 104, 212, 337, 367, 410
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 290
BstSFI	CTRYAG	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	209, 334
BstYI	RGATCY	2 cut(s)	209, 334
BsuRI	GGCC	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	3 cut(s)	50, 148, 481
CviJI	RGCY	8 cut(s)	70, 79, 125, 272, 284, 300, 405, 503
CviKI_1	RGCY	8 cut(s)	70, 79, 125, 272, 284, 300, 405, 503
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	75, 352
DpnI	GATC	6 cut(s)	5, 103, 211, 336, 366, 409
DpnII	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	141, 351, 415
FaeI	CATG	3 cut(s)	53, 151, 484
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	49, 147, 480
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	3 cut(s)	53, 151, 484
HindIII	AAGCTT	1 cut(s)	298
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	12, 228
Hpy188I	TCNGA	2 cut(s)	121, 434
Hpy188III	TCNNGA	3 cut(s)	65, 368, 411
Hpy8I	GTNNAC	2 cut(s)	12, 228
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 290
HpyF3I	CTNAG	2 cut(s)	75, 352
Hsp92II	CATG	3 cut(s)	53, 151, 484
Kzo9I	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	2 cut(s)	20, 270
LweI	GCATC	2 cut(s)	145, 280
MalI	GATC	6 cut(s)	5, 103, 211, 336, 366, 409
MboI	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
MboII	GAAGA	3 cut(s)	209, 244, 344
MflI	RGATCY	2 cut(s)	209, 334
MhlI	GDGCHC	2 cut(s)	60, 493
MluCI	AATT	1 cut(s)	385
MnlI	CCTC	1 cut(s)	274
MseI	TTAA	3 cut(s)	98, 302, 507
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	76, 290
NdeII	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
NlaIII	CATG	3 cut(s)	53, 151, 484
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	209, 334
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	98, 302, 507
Sau3AI	GATC	6 cut(s)	3, 101, 209, 334, 364, 407
Sau96I	GGNCC	1 cut(s)	168
ScaI	AGTACT	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	60, 493
SetI	ASST	4 cut(s)	72, 127, 302, 476
SfaNI	GCATC	2 cut(s)	145, 280
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	385
TatI	WGTACW	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	98, 302, 507
Tru9I	TTAA	3 cut(s)	98, 302, 507
TscAI	CASTG	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	168
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.