Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013159

Physical Location & Seq

Genomic Coordinates Reverse (-)

72374918 .. 72376208

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAATTACTTAATATCTCTAATTACTTGCTCTATTGATAACAGTAATTGTTGTGCTAAATATAAGCTTGTAATTTCGTTTGAGTTTGATGCTTTTATTGGCAGCGCGCTTGTTGACATGTACTCGAAGAATGGGCGCTTGGAGAAGGCGCGCCAGGTGTTTGATATGATGGTGGAGAAAGATTTGGTGGCTTTGAATGCTGTTGTTTCGGGGTTTTGTCAGCATGGCATGGCGGAAAAAGCATTGGTTTTGGTGGAGGAAATGCAGCTGGTGGGGATTAAGCCTAATTTGATTACTTGGAACACTTTGGTTGCTGGGTTTTCGCAGAAGGGTGATGAAGCAATGGCCTCTAGGCTGTTTAAATTGATGCGTGTGAACGGGATTGAGCCTGATGTTGTTTCTTGGACTTCGGTTATATCTGGGTTTGTGAAGAATTTTCAAAACAGTAAGGCTTTTTATACATTTAAGCAAATGTTGGATCATGGAATATGTCCAACTTCGGCTACAGTCAGTAGCCTGTTGCCTGCTTGTGCAGCTGTGACGAACTTGAGGTCTGGTAAGGAGATACATGCTTATGCATTGGTGACAGGAGTTGAAGCTGATGTATATGTGAGGAGTGCTCTTGTTGATATGTATGCGAAATGCGGATTTATATATGAAGCAAAGACATTGTTTTGCAAGATGTCTGAAAAGAACACTGTAACGTGGAACTCAATGATTTTTGGATACGCAAATCATGGGTATTGCACTGAAGCAATTGAGCTTTTCAACAAGATGAAGACAGAAGACAACAGAAAACTTGATTACTTGACTTTCGTAGCAGTCCTTACTACTTGTTGTCATACTGGAATGATTGAACTTGGCAAAAGCTTGTTTAGTTCGATGCAGGAAGAACATGGGATCATGCCAAGACTAGAACATTATGCATGTATGGTTGATCTTCTAGGTCGAGCAGGAAATCTCACTGAGGCATATGATATGATTAAGGCAATGCCCATGGAGCCAGATTCGTTTGTATGGGGAGCATTATTAGGAGCAAGTAGGAACTATGGGAATATAGAACTTGCTGAGATAGCAGCTAAGCATTTGTCAGAGCTAGAGCCGGAGAGTGCGGGAAACAATTTGCTATTATCAAGTCTATATGCAGATGCTGGAAATTGGGTAAATGTTGCAAGGTTGAAGAAAATGATGAAGAAAAAGAAGTTAAGGAAACTACCAGGATGCAGTTGGACGGAAGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

414

Amino Acids

45.95

Weight (kDa)

6.71

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 99	2.8e-07	PPR repeat family
PPR_long	PF17177	77 - 180	4.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	84 - 145	2.8e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	95 - 142	1.2e-10	PPR repeat family
PPR_3	PF13812	122 - 177	2.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	130 - 178	1.4e-10	PPR repeat family
PPR_2	PF13041	231 - 281	1.5e-09	PPR repeat family
PPR_1	PF12854	232 - 260	2.9e-06	PPR repeat
PPR	PF01535	234 - 262	8.2e-09	PPR repeat
E_motif	PF20431	350 - 412	1.5e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59600
fragaria_vesca	FvH4_3g36900
malus_domestica	MD11G1095800.v1.1
prunus_persica	Prupe.6G071300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281
rosa_laevigata	RLG00000035845
rosa_multiflora	Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014840
rosa_rugosa	Rorug05G0376700
rosa_samantha	Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100
rosa_wichuraiana	Rw5G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	107, 151
AciI	CCGC	3 cut(s)	233, 645, 1112
AclWI	GGATC	2 cut(s)	486, 908
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	196, 440, 596, 769, 857, 1180
AjnI	CCWGG	2 cut(s)	153, 1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	9 cut(s)	67, 268, 536, 599, 763, 870, 1079, 1096, 1238
AluI	AGCT	9 cut(s)	67, 268, 536, 599, 763, 870, 1079, 1096, 1238
Alw21I	GWGCWC	1 cut(s)	622
AlwI	GGATC	2 cut(s)	486, 908
AlwNI	CAGNNNCTG	1 cut(s)	1151
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	5 cut(s)	102, 265, 533, 1076, 1238
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AscI	GGCGCGCC	1 cut(s)	149
AspLEI	GCGC	5 cut(s)	107, 109, 138, 151, 153
AsuHPI	GGTGA	2 cut(s)	344, 595
BbsI	GAAGAC	2 cut(s)	785, 792
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	5 cut(s)	114, 277, 545, 1088, 1225
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	155, 1218
BciVI	GTATCC	1 cut(s)	719
BfaI	CTAG	4 cut(s)	351, 914, 944, 1097
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	5 cut(s)	103, 266, 534, 1077, 1239
BlpI	GCTNAGC	1 cut(s)	1080
BlsI	GCNGC	5 cut(s)	104, 267, 535, 1078, 1240
Bme1390I	CCNGG	2 cut(s)	155, 1218
BmiI	GGNNCC	1 cut(s)	1002
BmrFI	CCNGG	2 cut(s)	155, 1218
BmsI	GCATC	5 cut(s)	79, 357, 873, 1138, 1211
BpiI	GAAGAC	2 cut(s)	785, 792
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
Bpu1102I	GCTNAGC	1 cut(s)	1080
BpuEI	CTTGAG	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	996
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	2 cut(s)	348, 996
BseBI	CCWGG	2 cut(s)	155, 1218
BseDI	CCNNGG	1 cut(s)	996
BseGI	GGATG	1 cut(s)	1226
BseMI	GCAATG	2 cut(s)	348, 996
BseMII	CTCAG	2 cut(s)	957, 1059
BseNI	ACTGG	1 cut(s)	850
BsePI	GCGCGC	2 cut(s)	105, 149
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	5 cut(s)	114, 277, 545, 1088, 1225
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	107, 151
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	1103
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	478, 900, 937
Bsp1720I	GCTNAGC	1 cut(s)	1080
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	3 cut(s)	233, 645, 1112
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	958, 1060
BspFNI	CGCG	2 cut(s)	107, 151
BspLI	GGNNCC	1 cut(s)	1002
BspPI	GGATC	2 cut(s)	486, 908
BsrDI	GCAATG	2 cut(s)	348, 996
BsrI	ACTGG	1 cut(s)	850
BssECI	CCNNGG	1 cut(s)	996
BssHII	GCGCGC	2 cut(s)	105, 149
BssMI	GATC	3 cut(s)	478, 900, 937
BssT1I	CCWWGG	1 cut(s)	996
Bst2UI	CCWGG	2 cut(s)	155, 1218
Bst4CI	ACNGT	4 cut(s)	44, 446, 508, 700
BstC8I	GCNNGC	3 cut(s)	107, 151, 525
BstDEI	CTNAG	3 cut(s)	966, 1068, 1080
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	1 cut(s)	1226
BstFNI	CGCG	2 cut(s)	107, 151
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	5 cut(s)	107, 109, 138, 151, 153
BstKTI	GATC	3 cut(s)	481, 903, 940
BstMBI	GATC	3 cut(s)	478, 900, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 239, 533, 1000, 1073
BstNI	CCWGG	2 cut(s)	155, 1218
BstNSI	RCATGY	3 cut(s)	121, 572, 930
BstSCI	CCNGG	2 cut(s)	153, 1216
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	2 cut(s)	107, 151
BstV1I	GCAGC	5 cut(s)	114, 277, 545, 1088, 1225
BstV2I	GAAGAC	2 cut(s)	785, 792
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	1226
BtsIMutI	CAGTG	3 cut(s)	696, 747, 963
Cac8I	GCNNGC	3 cut(s)	107, 151, 525
CaiI	CAGNNNCTG	1 cut(s)	1151
CfoI	GCGC	5 cut(s)	107, 109, 138, 151, 153
Csp6I	GTAC	1 cut(s)	121
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	966, 1068, 1080
DpnI	GATC	3 cut(s)	480, 902, 939
DpnII	GATC	3 cut(s)	478, 900, 937
DraI	TTTAAA	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	996
Eco57I	CTGAAG	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	153, 1216
EcoT14I	CCWWGG	1 cut(s)	996
EcoT22I	ATGCAT	2 cut(s)	580, 928
ErhI	CCWWGG	1 cut(s)	996
FauI	CCCGC	1 cut(s)	1105
FauNDI	CATATG	1 cut(s)	973
Fnu4HI	GCNGC	5 cut(s)	103, 266, 534, 1077, 1239
FokI	GGATG	1 cut(s)	1233
Fsp4HI	GCNGC	5 cut(s)	103, 266, 534, 1077, 1239
FspBI	CTAG	4 cut(s)	351, 914, 944, 1097
GlaI	GCGC	5 cut(s)	106, 108, 137, 150, 152
GluI	GCNGC	5 cut(s)	103, 266, 534, 1077, 1239
GsaI	CCCAGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	1103
HhaI	GCGC	5 cut(s)	107, 109, 138, 151, 153
Hin6I	GCGC	5 cut(s)	105, 107, 136, 149, 151
HinP1I	GCGC	5 cut(s)	105, 107, 136, 149, 151
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	65, 868
HinfI	GANTC	1 cut(s)	1007
HpaII	CCGG	1 cut(s)	1103
HphI	GGTGA	2 cut(s)	344, 595
Hpy166II	GTNNAC	2 cut(s)	115, 376
Hpy188I	TCNGA	2 cut(s)	688, 1093
Hpy8I	GTNNAC	2 cut(s)	115, 376
HpyAV	CCTTC	2 cut(s)	139, 322
HpyCH4III	ACNGT	4 cut(s)	44, 446, 508, 700
HpyCH4IV	ACGT	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 239, 533, 1000, 1073
HpyF3I	CTNAG	3 cut(s)	966, 1068, 1080
HpySE526I	ACGT	1 cut(s)	704
HspAI	GCGC	5 cut(s)	105, 107, 136, 149, 151
Kzo9I	GATC	3 cut(s)	478, 900, 937
LmnI	GCTCC	3 cut(s)	1000, 1022, 1034
Lsp1109I	GCAGC	5 cut(s)	114, 277, 545, 1088, 1225
LweI	GCATC	5 cut(s)	79, 357, 873, 1138, 1211
MaeI	CTAG	4 cut(s)	351, 914, 944, 1097
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	538, 583, 700
MalI	GATC	3 cut(s)	480, 902, 939
MboI	GATC	3 cut(s)	478, 900, 937
MboII	GAAGA	8 cut(s)	139, 442, 790, 797, 902, 932, 1192, 1204
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	622
MmeI	TCCRAC	3 cut(s)	456, 518, 1208
MnlI	CCTC	5 cut(s)	250, 358, 543, 606, 961
Mph1103I	ATGCAT	2 cut(s)	580, 928
MseI	TTAA	6 cut(s)	11, 279, 360, 465, 984, 1205
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	268, 536
MspI	CCGG	1 cut(s)	1103
MspR9I	CCNGG	2 cut(s)	155, 1218
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	155, 1218
MvnI	CGCG	2 cut(s)	107, 151
MwoI	GCNNNNNNNGC	5 cut(s)	197, 239, 533, 1000, 1073
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	3 cut(s)	478, 900, 937
NlaIV	GGNNCC	1 cut(s)	1002
NmuCI	GTSAC	2 cut(s)	538, 583
NsiI	ATGCAT	2 cut(s)	580, 928
NspI	RCATGY	3 cut(s)	121, 572, 930
PalAI	GGCGCGCC	1 cut(s)	149
PauI	GCGCGC	2 cut(s)	105, 149
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	1007
PkrI	GCNGC	5 cut(s)	104, 267, 535, 1078, 1240
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	153, 1216
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	153, 1216
PspN4I	GGNNCC	1 cut(s)	1002
PstNI	CAGNNNCTG	1 cut(s)	1151
PteI	GCGCGC	2 cut(s)	105, 149
PvuII	CAGCTG	2 cut(s)	268, 536
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	6 cut(s)	11, 279, 360, 465, 984, 1205
SatI	GCNGC	5 cut(s)	103, 266, 534, 1077, 1239
Sau3AI	GATC	3 cut(s)	478, 900, 937
ScrFI	CCNGG	2 cut(s)	155, 1218
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	5 cut(s)	79, 357, 873, 1138, 1211
SfcI	CTRYAG	1 cut(s)	504
SgsI	GGCGCGCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
SsiI	CCGC	3 cut(s)	233, 645, 1112
SspMI	CTAG	4 cut(s)	351, 914, 944, 1097
StyD4I	CCNGG	2 cut(s)	153, 1216
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	4 cut(s)	44, 446, 508, 700
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	3 cut(s)	125, 881, 949
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	1007
Tru1I	TTAA	6 cut(s)	11, 279, 360, 465, 984, 1205
Tru9I	TTAA	6 cut(s)	11, 279, 360, 465, 984, 1205
TscAI	CASTG	3 cut(s)	703, 754, 970
TseFI	GTSAC	2 cut(s)	538, 583
TseI	GCWGC	5 cut(s)	102, 265, 533, 1076, 1238
Tsp45I	GTSAC	2 cut(s)	538, 583
TspDTI	ATGAA	5 cut(s)	17, 351, 672, 791, 1205
TspRI	CASTG	3 cut(s)	703, 754, 970
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	3 cut(s)	121, 572, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1224
XspI	CTAG	4 cut(s)	351, 914, 944, 1097
Zsp2I	ATGCAT	2 cut(s)	580, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.