Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013159

Physical Location & Seq

Genomic Coordinates Reverse (-)

72395920 .. 72396333

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACTCCCATCACCCAACACCGTACATTTCAATCCTCGCATGACCTGTACACAAAACTGATCGGAATTTACGCTCGTGATCGAGAATTGCACCCAGCAAGACTACTCCACGCCCATTTGATCATCACCGGGTTGGCCCGTTCGACCCATTTCGCCTCCAAGCTCATATCTTTGTACGCTTCCTGCGGCCAAGTAGCCCATACCCGCAGCCTGTTCGACCAAATTCCCAAGACCAACATACGCCTCTGGTTTGCTCTCATCGGAGCCTATGCCTGCTGTGGGTTTTACCAGCAAGCCATGGATGTGAGAAGTGAGATGCAAAGAGCGGGTTCCAGGCCCAACAGGATTGTTATTCCCAGTGTTCTCAAGGGCATGTGGATAGAAGCTGCCTGGTATAGACACATTGTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

137

Amino Acids

15.64

Weight (kDa)

10.02

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59600
fragaria_vesca	FvH4_3g36900
malus_domestica	MD11G1095800.v1.1
prunus_persica	Prupe.6G071300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281
rosa_laevigata	RLG00000035845
rosa_multiflora	Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014840
rosa_rugosa	Rorug05G0376700
rosa_samantha	Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100
rosa_wichuraiana	Rw5G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	326
AciI	CCGC	3 cut(s)	186, 205, 326
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	66, 222
AfaI	GTAC	3 cut(s)	25, 50, 176
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	332, 389
AluBI	AGCT	2 cut(s)	163, 386
AluI	AGCT	2 cut(s)	163, 386
AoxI	GGCC	3 cut(s)	135, 187, 335
ApeKI	GCWGC	2 cut(s)	207, 386
ApoI	RAATTY	2 cut(s)	66, 222
AspS9I	GGNCC	2 cut(s)	136, 336
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	4, 118
BauI	CACGAG	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	219, 373
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	334, 391
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	130
BisI	GCNGC	3 cut(s)	187, 208, 387
BlsI	GCNGC	3 cut(s)	188, 209, 388
Bme1390I	CCNGG	3 cut(s)	130, 334, 391
BmgT120I	GGNCC	2 cut(s)	136, 336
BmiI	GGNNCC	2 cut(s)	265, 331
BmrFI	CCNGG	3 cut(s)	130, 334, 391
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	334, 391
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	219, 373
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	3 cut(s)	137, 189, 337
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	3 cut(s)	137, 189, 337
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	60, 79, 120
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	3 cut(s)	186, 205, 326
BspANI	GGCC	3 cut(s)	137, 189, 337
BspLI	GGNNCC	2 cut(s)	265, 331
BsrBI	CCGCTC	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	60, 79, 120
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	334, 391
Bst4CI	ACNGT	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	274, 294
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	63, 82, 123
BstMBI	GATC	3 cut(s)	60, 79, 120
BstNI	CCWGG	2 cut(s)	334, 391
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	3 cut(s)	128, 332, 389
BstV1I	GCAGC	2 cut(s)	219, 373
BsuRI	GGCC	3 cut(s)	137, 189, 337
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	274, 294
Cfr13I	GGNCC	2 cut(s)	136, 336
Csp6I	GTAC	3 cut(s)	24, 49, 175
CviAII	CATG	3 cut(s)	41, 298, 373
CviQI	GTAC	3 cut(s)	24, 49, 175
DpnI	GATC	3 cut(s)	62, 81, 122
DpnII	GATC	3 cut(s)	60, 79, 120
EaeI	YGGCCR	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	332, 389
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	44, 301, 376
FaiI	YATR	8 cut(s)	42, 167, 201, 239, 270, 299, 374, 396
FatI	CATG	3 cut(s)	40, 297, 372
FauI	CCCGC	2 cut(s)	212, 319
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	187, 208, 387
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	187, 208, 387
GluI	GCNGC	3 cut(s)	187, 208, 387
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	137, 189, 337
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	44, 301, 376
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	4, 118
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	65, 263
Hpy188III	TCNNGA	2 cut(s)	77, 83
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	91, 319
Hsp92II	CATG	3 cut(s)	44, 301, 376
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	60, 79, 120
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	219, 373
LweI	GCATC	1 cut(s)	306
MalI	GATC	3 cut(s)	62, 81, 122
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	3 cut(s)	60, 79, 120
MluCI	AATT	3 cut(s)	66, 86, 222
MnlI	CCTC	3 cut(s)	46, 166, 254
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	130, 334, 391
MvaI	CCWGG	2 cut(s)	334, 391
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	3 cut(s)	60, 79, 120
NlaIII	CATG	3 cut(s)	44, 301, 376
NlaIV	GGNNCC	2 cut(s)	265, 331
NspI	RCATGY	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	188, 209, 388
Psp6I	CCWGG	2 cut(s)	332, 389
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	332, 389
PspN4I	GGNNCC	2 cut(s)	265, 331
PspPI	GGNCC	2 cut(s)	136, 336
RsaI	GTAC	3 cut(s)	25, 50, 176
RsaNI	GTAC	3 cut(s)	24, 49, 175
RseI	CAYNNNNRTG	1 cut(s)	302
SatI	GCNGC	3 cut(s)	187, 208, 387
Sau3AI	GATC	3 cut(s)	60, 79, 120
Sau96I	GGNCC	2 cut(s)	136, 336
ScrFI	CCNGG	3 cut(s)	130, 334, 391
SetI	ASST	3 cut(s)	48, 165, 388
SfaNI	GCATC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	66, 86, 222
SsiI	CCGC	3 cut(s)	186, 205, 326
StyD4I	CCNGG	3 cut(s)	128, 332, 389
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	82, 143, 216
TasI	AATT	3 cut(s)	66, 86, 222
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	189
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	2 cut(s)	207, 386
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	66, 222
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.