Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002406.1

Orthogroup ID

OG0013159

Physical Location & Seq

Genomic Coordinates Reverse (-)

68921 .. 70522

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002406.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

atgactcccatcacccaacaccgtacatttcaatcctcgcctgacctctacacaaagctgatcggaatctacgctcgtgatcgagaattgcagccagcaagactactccacgcccatttgatcaccaccgggttggcccgtttgacccattttgcctccaagctcatagccttgtacgcttcctgcggccgagtagcccatgcccgtgacctgttcgaccaaattcccaagacgaacatacgccggtggtttgccctcatcggagcctacgctcgctctgggttttatcagcaagcaatggatgtgttcagtgagatgcaaagagcgggttcgaggcccaataggattgttattcccagtgttctcaaggcatgtgggcatctctctgatgttaaaaccggagagaaactacatgctcttgtgttcaggcactcgtttgagtttgatgcttttattagcagcgcgcttgttgacatgtactcgaagaatgggcgcgtggagaaggcgcgccgggtgtttgatatgatggtggagaaagatttggtggctttgaatgctgttgtttcggggttttgtcagcatggcatggcggaagaagcattggttttggtggaggaaatgcagctggtggggattaaggctaatttgattacttggaacactttggttgctgggttttcgcagaagggtgatgaagcaatggcctctaggctgtttaaattgatgcgtgtgaacgggattgagcctgatgttgtttcttggacttcggttatatctgggtttgtgaagaattttcaaaacagtaaggctttttatacatttaagcaaatgttggatcatggaatatgtccaacttcggctacagtcagtagcctgttgcctgcttgtgcagctgtgacgaacttgaggtctggtaaggagatacatgcttatgcattggtgactggagttgaagctgatgtatatgtgaggagtgctcttgttgatatgtatgcgaaatgcggatttatatatgaagcaaagacattgttttgcaagatgtctgaaaagaacactgtaacgtggaactcaatgatttttggatacgcaaatcatgggtattgcactgaagcaattgagcttttcaacaagatgaagacagaagacaacagaaaacttgattacttgactttcgtagcagtccttactgcttgttgtcatgctggaatgattgaacttggcaaaagcttgtttagttcgatgcaggaagaacatgggatcgtgccaagactagaacattatgcatgtatggttgatcttctaggtcgagcaggaaatctcactgaggcatatgatatgattaaggcaatgcccatggagccagatttgtttgtatggggagcattgttaggagcaagtcggaactatgggaatatagaacttgctgagatagcagctaagcatttgtcagagctagagccggagagtgcaggaaacaatttgctattatcaagtctatatgcagatgctggaaattgggtaaatgttgcaaggttgaagaaaatgatgaagaaaaagaagttaaggaaactaccaggatgcagttggactgaagctgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

533

Amino Acids

59.39

Weight (kDa)

8.75

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59600
fragaria_vesca	FvH4_3g36900
malus_domestica	MD11G1095800.v1.1
prunus_persica	Prupe.6G071300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281
rosa_laevigata	RLG00000035845
rosa_multiflora	Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014840
rosa_rugosa	Rorug05G0376700
rosa_samantha	Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100
rosa_wichuraiana	Rw5G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	3 cut(s)	464, 495, 508
AciI	CCGC	4 cut(s)	186, 326, 590, 1002
AclWI	GGATC	2 cut(s)	843, 1265
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	222, 790
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	3 cut(s)	25, 176, 479
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	7 cut(s)	32, 553, 797, 953, 1126, 1214, 1537
AjnI	CCWGG	1 cut(s)	1573
Alw21I	GWGCWC	1 cut(s)	979
AlwI	GGATC	2 cut(s)	843, 1265
AlwNI	CAGNNNCTG	1 cut(s)	1508
AoxI	GGCC	4 cut(s)	135, 187, 335, 702
ApeKI	GCWGC	6 cut(s)	91, 459, 622, 890, 1433, 1595
ApoI	RAATTY	2 cut(s)	222, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AscI	GGCGCGCC	1 cut(s)	506
AspLEI	GCGC	5 cut(s)	464, 466, 495, 508, 510
AspS9I	GGNCC	2 cut(s)	136, 336
AsuC2I	CCSGG	2 cut(s)	130, 512
AsuHPI	GGTGA	4 cut(s)	4, 115, 701, 952
BauI	CACGAG	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	1142, 1149
Bbv12I	GWGCWC	1 cut(s)	979
BbvI	GCAGC	6 cut(s)	103, 471, 634, 902, 1445, 1582
BccI	CCATC	2 cut(s)	17, 520
BciT130I	CCWGG	1 cut(s)	1575
BciVI	GTATCC	1 cut(s)	1076
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	130, 512
BfaI	CTAG	4 cut(s)	708, 1271, 1301, 1454
BfmI	CTRYAG	1 cut(s)	861
BfuI	GTATCC	1 cut(s)	1076
BisI	GCNGC	7 cut(s)	92, 187, 460, 623, 891, 1434, 1596
BlpI	GCTNAGC	1 cut(s)	1437
BlsI	GCNGC	7 cut(s)	93, 188, 461, 624, 892, 1435, 1597
Bme1390I	CCNGG	3 cut(s)	130, 512, 1575
BmgT120I	GGNCC	2 cut(s)	136, 336
BmiI	GGNNCC	2 cut(s)	265, 1359
BmrFI	CCNGG	3 cut(s)	130, 512, 1575
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	7 cut(s)	306, 388, 436, 714, 1230, 1495, 1568
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	2 cut(s)	1142, 1149
BplI	GAGNNNNNCTC	2 cut(s)	961, 993
BpmI	CTGGAG	1 cut(s)	966
Bpu1102I	GCTNAGC	1 cut(s)	1437
BpuEI	CTTGAG	2 cut(s)	350, 925
BpuMI	CCSGG	2 cut(s)	130, 512
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	1353
BsaWI	WCCGGW	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	357, 949
Bse3DI	GCAATG	3 cut(s)	303, 705, 1353
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	1575
BseDI	CCNNGG	1 cut(s)	1353
BseGI	GGATG	2 cut(s)	307, 1583
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	3 cut(s)	303, 705, 1353
BseMII	CTCAG	2 cut(s)	1314, 1416
BseNI	ACTGG	2 cut(s)	357, 949
BsePI	GCGCGC	2 cut(s)	462, 506
BseRI	GAGGAG	1 cut(s)	985
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	6 cut(s)	103, 471, 634, 902, 1445, 1582
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	2 cut(s)	909, 1488
Bsh1236I	CGCG	3 cut(s)	464, 495, 508
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	137, 189, 337, 704
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	979
BsiSI	CCGG	5 cut(s)	129, 244, 399, 511, 1460
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	4 cut(s)	137, 189, 337, 704
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
Bsp1720I	GCTNAGC	1 cut(s)	1437
Bsp19I	CCATGG	1 cut(s)	1353
BspACI	CCGC	4 cut(s)	186, 326, 590, 1002
BspANI	GGCC	4 cut(s)	137, 189, 337, 704
BspCNI	CTCAG	2 cut(s)	1315, 1417
BspFNI	CGCG	3 cut(s)	464, 495, 508
BspLI	GGNNCC	2 cut(s)	265, 1359
BspPI	GGATC	2 cut(s)	843, 1265
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	3 cut(s)	303, 705, 1353
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	357, 949
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	1353
BssHII	GCGCGC	2 cut(s)	462, 506
BssMI	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	1353
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	1575
Bst4CI	ACNGT	4 cut(s)	23, 803, 865, 1057
BstC8I	GCNNGC	6 cut(s)	96, 274, 294, 464, 508, 882
BstDEI	CTNAG	3 cut(s)	1323, 1425, 1437
BstDSI	CCRYGG	1 cut(s)	1353
BstF5I	GGATG	2 cut(s)	307, 1583
BstFNI	CGCG	3 cut(s)	464, 495, 508
BstHHI	GCGC	5 cut(s)	464, 466, 495, 508, 510
BstKTI	GATC	6 cut(s)	63, 82, 123, 838, 1260, 1297
BstMBI	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 554, 596, 890, 1357, 1430
BstNI	CCWGG	1 cut(s)	1575
BstNSI	RCATGY	5 cut(s)	375, 416, 478, 929, 1287
BstSCI	CCNGG	3 cut(s)	128, 510, 1573
BstSFI	CTRYAG	1 cut(s)	861
BstUI	CGCG	3 cut(s)	464, 495, 508
BstV1I	GCAGC	6 cut(s)	103, 471, 634, 902, 1445, 1582
BstV2I	GAAGAC	2 cut(s)	1142, 1149
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	1076
BsuRI	GGCC	4 cut(s)	137, 189, 337, 704
BtgI	CCRYGG	1 cut(s)	1353
BtsCI	GGATG	2 cut(s)	307, 1583
BtsIMutI	CAGTG	5 cut(s)	316, 364, 1053, 1104, 1320
Cac8I	GCNNGC	6 cut(s)	96, 274, 294, 464, 508, 882
CaiI	CAGNNNCTG	1 cut(s)	1508
CfoI	GCGC	5 cut(s)	464, 466, 495, 508, 510
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	136, 336
Csp6I	GTAC	3 cut(s)	24, 175, 478
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviQI	GTAC	3 cut(s)	24, 175, 478
DdeI	CTNAG	3 cut(s)	1323, 1425, 1437
DpnI	GATC	6 cut(s)	62, 81, 122, 837, 1259, 1296
DpnII	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
DraI	TTTAAA	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	187
EagI	CGGCCG	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	605
EclXI	CGGCCG	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	1353
Eco52I	CGGCCG	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	1128
EcoRII	CCWGG	1 cut(s)	1573
EcoT14I	CCWWGG	1 cut(s)	1353
EcoT22I	ATGCAT	2 cut(s)	937, 1285
ErhI	CCWWGG	1 cut(s)	1353
FauI	CCCGC	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	1330
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	92, 187, 460, 623, 891, 1434, 1596
FokI	GGATG	2 cut(s)	314, 1590
Fsp4HI	GCNGC	7 cut(s)	92, 187, 460, 623, 891, 1434, 1596
FspBI	CTAG	4 cut(s)	708, 1271, 1301, 1454
GlaI	GCGC	5 cut(s)	463, 465, 494, 507, 509
GluI	GCNGC	7 cut(s)	92, 187, 460, 623, 891, 1434, 1596
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	4 cut(s)	137, 189, 337, 704
HapII	CCGG	5 cut(s)	129, 244, 399, 511, 1460
HhaI	GCGC	5 cut(s)	464, 466, 495, 508, 510
Hin6I	GCGC	5 cut(s)	462, 464, 493, 506, 508
HinP1I	GCGC	5 cut(s)	462, 464, 493, 506, 508
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	1225
HinfI	GANTC	2 cut(s)	4, 66
HpaII	CCGG	5 cut(s)	129, 244, 399, 511, 1460
HphI	GGTGA	4 cut(s)	4, 115, 701, 952
Hpy166II	GTNNAC	2 cut(s)	472, 733
Hpy188I	TCNGA	6 cut(s)	65, 263, 388, 1045, 1401, 1450
Hpy188III	TCNNGA	2 cut(s)	77, 83
Hpy8I	GTNNAC	2 cut(s)	472, 733
HpyAV	CCTTC	2 cut(s)	496, 679
HpyCH4III	ACNGT	4 cut(s)	23, 803, 865, 1057
HpyCH4IV	ACGT	1 cut(s)	1061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 554, 596, 890, 1357, 1430
HpyF3I	CTNAG	3 cut(s)	1323, 1425, 1437
HpySE526I	ACGT	1 cut(s)	1061
HspAI	GCGC	5 cut(s)	462, 464, 493, 506, 508
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
LmnI	GCTCC	4 cut(s)	263, 1357, 1379, 1391
Lsp1109I	GCAGC	6 cut(s)	103, 471, 634, 902, 1445, 1582
LweI	GCATC	7 cut(s)	306, 388, 436, 714, 1230, 1495, 1568
MaeI	CTAG	4 cut(s)	708, 1271, 1301, 1454
MaeII	ACGT	1 cut(s)	1061
MaeIII	GTNAC	4 cut(s)	206, 895, 940, 1057
MalI	GATC	6 cut(s)	62, 81, 122, 837, 1259, 1296
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
MboII	GAAGA	9 cut(s)	496, 605, 799, 1147, 1154, 1259, 1289, 1549, 1561
MfeI	CAATTG	1 cut(s)	1113
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	8 cut(s)	86, 222, 643, 719, 790, 1113, 1477, 1513
MmeI	TCCRAC	4 cut(s)	813, 875, 1379, 1565
Mph1103I	ATGCAT	2 cut(s)	937, 1285
MseI	TTAA	6 cut(s)	393, 636, 717, 822, 1341, 1562
MslI	CAYNNNNRTG	2 cut(s)	204, 930
MspA1I	CMGCKG	2 cut(s)	625, 893
MspI	CCGG	5 cut(s)	129, 244, 399, 511, 1460
MspR9I	CCNGG	3 cut(s)	130, 512, 1575
MunI	CAATTG	1 cut(s)	1113
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	1575
MvnI	CGCG	3 cut(s)	464, 495, 508
MwoI	GCNNNNNNNGC	6 cut(s)	176, 554, 596, 890, 1357, 1430
NciI	CCSGG	2 cut(s)	130, 512
NcoI	CCATGG	1 cut(s)	1353
NdeI	CATATG	1 cut(s)	1330
NdeII	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
NlaIV	GGNNCC	2 cut(s)	265, 1359
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	3 cut(s)	206, 895, 940
NsiI	ATGCAT	2 cut(s)	937, 1285
NspI	RCATGY	5 cut(s)	375, 416, 478, 929, 1287
PalAI	GGCGCGCC	1 cut(s)	506
PauI	GCGCGC	2 cut(s)	462, 506
PciI	ACATGT	1 cut(s)	474
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	7 cut(s)	93, 188, 461, 624, 892, 1435, 1597
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	1573
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	1573
PspN4I	GGNNCC	2 cut(s)	265, 1359
PspPI	GGNCC	2 cut(s)	136, 336
PstNI	CAGNNNCTG	1 cut(s)	1508
PteI	GCGCGC	2 cut(s)	462, 506
PvuII	CAGCTG	2 cut(s)	625, 893
RsaI	GTAC	3 cut(s)	25, 176, 479
RsaNI	GTAC	3 cut(s)	24, 175, 478
RseI	CAYNNNNRTG	2 cut(s)	204, 930
SaqAI	TTAA	6 cut(s)	393, 636, 717, 822, 1341, 1562
SatI	GCNGC	7 cut(s)	92, 187, 460, 623, 891, 1434, 1596
Sau3AI	GATC	6 cut(s)	60, 79, 120, 835, 1257, 1294
Sau96I	GGNCC	2 cut(s)	136, 336
ScrFI	CCNGG	3 cut(s)	130, 512, 1575
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	7 cut(s)	306, 388, 436, 714, 1230, 1495, 1568
SfcI	CTRYAG	1 cut(s)	861
SgrAI	CRCCGGYG	1 cut(s)	243
SgsI	GGCGCGCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	204, 930
SmlI	CTYRAG	2 cut(s)	365, 904
SmoI	CTYRAG	2 cut(s)	365, 904
Sse9I	AATT	8 cut(s)	86, 222, 643, 719, 790, 1113, 1477, 1513
SsiI	CCGC	4 cut(s)	186, 326, 590, 1002
SspMI	CTAG	4 cut(s)	708, 1271, 1301, 1454
StyD4I	CCNGG	3 cut(s)	128, 510, 1573
StyI	CCWWGG	1 cut(s)	1353
TaaI	ACNGT	4 cut(s)	23, 803, 865, 1057
TaiI	ACGT	1 cut(s)	1064
TaqI	TCGA	6 cut(s)	82, 216, 332, 482, 1238, 1306
TasI	AATT	8 cut(s)	86, 222, 643, 719, 790, 1113, 1477, 1513
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	6 cut(s)	393, 636, 717, 822, 1341, 1562
Tru9I	TTAA	6 cut(s)	393, 636, 717, 822, 1341, 1562
TscAI	CASTG	5 cut(s)	316, 364, 1060, 1111, 1327
TseFI	GTSAC	3 cut(s)	206, 895, 940
TseI	GCWGC	6 cut(s)	91, 459, 622, 890, 1433, 1595
Tsp45I	GTSAC	3 cut(s)	206, 895, 940
TspDTI	ATGAA	4 cut(s)	708, 1029, 1148, 1562
TspRI	CASTG	5 cut(s)	316, 364, 1060, 1111, 1327
XapI	RAATTY	2 cut(s)	222, 790
XceI	RCATGY	5 cut(s)	375, 416, 478, 929, 1287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1581
XspI	CTAG	4 cut(s)	708, 1271, 1301, 1454
Zsp2I	ATGCAT	2 cut(s)	937, 1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.