Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59600 |
| fragaria_vesca | FvH4_3g36900 |
| malus_domestica | MD11G1095800.v1.1 |
| prunus_persica | Prupe.6G071300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281 |
| rosa_laevigata | RLG00000035845 |
| rosa_multiflora | Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00014840 |
| rosa_rugosa | Rorug05G0376700 |
| rosa_samantha | Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100 |
| rosa_wichuraiana | Rw5G040750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 48, 106 |
| AcoI | YGGCCR | 1 cut(s) | 49 |
| AcsI | RAATTY | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 195 |
| AgeI | ACCGGT | 1 cut(s) | 260 |
| AgsI | TTSAA | 1 cut(s) | 195 |
| AluBI | AGCT | 1 cut(s) | 25 |
| AluI | AGCT | 1 cut(s) | 25 |
| AoxI | GGCC | 3 cut(s) | 5, 49, 197 |
| ApoI | RAATTY | 1 cut(s) | 84 |
| AsiGI | ACCGGT | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| BisI | GCNGC | 2 cut(s) | 49, 106 |
| BlsI | GCNGC | 2 cut(s) | 50, 107 |
| BmiI | GGNNCC | 1 cut(s) | 127 |
| BmrI | ACTGGG | 1 cut(s) | 213 |
| BmsI | GCATC | 2 cut(s) | 168, 250 |
| BmuI | ACTGGG | 1 cut(s) | 213 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 1 cut(s) | 159 |
| BsaWI | WCCGGW | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 195 |
| Bse118I | RCCGGY | 2 cut(s) | 188, 260 |
| Bse1I | ACTGG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 1 cut(s) | 159 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 219 |
| BshFI | GGCC | 3 cut(s) | 7, 51, 199 |
| BshTI | ACCGGT | 1 cut(s) | 260 |
| BsiSI | CCGG | 2 cut(s) | 189, 261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 195 |
| BsnI | GGCC | 3 cut(s) | 7, 51, 199 |
| Bsp143I | GATC | 1 cut(s) | 120 |
| Bsp19I | CCATGG | 1 cut(s) | 159 |
| BspACI | CCGC | 2 cut(s) | 48, 106 |
| BspANI | GGCC | 3 cut(s) | 7, 51, 199 |
| BspLI | GGNNCC | 1 cut(s) | 127 |
| BsrFI | RCCGGY | 2 cut(s) | 188, 260 |
| BsrI | ACTGG | 1 cut(s) | 219 |
| BssAI | RCCGGY | 2 cut(s) | 188, 260 |
| BssECI | CCNNGG | 1 cut(s) | 159 |
| BssMI | GATC | 1 cut(s) | 120 |
| BssT1I | CCWWGG | 1 cut(s) | 159 |
| Bst4CI | ACNGT | 1 cut(s) | 273 |
| BstC8I | GCNNGC | 2 cut(s) | 136, 156 |
| BstDSI | CCRYGG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstKTI | GATC | 1 cut(s) | 123 |
| BstMBI | GATC | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 38 |
| BstNSI | RCATGY | 1 cut(s) | 237 |
| BsuRI | GGCC | 3 cut(s) | 7, 51, 199 |
| BtgI | CCRYGG | 1 cut(s) | 159 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 2 cut(s) | 178, 226 |
| Cac8I | GCNNGC | 2 cut(s) | 136, 156 |
| Cfr10I | RCCGGY | 2 cut(s) | 188, 260 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CspAI | ACCGGT | 1 cut(s) | 260 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 217, 252 |
| CviAII | CATG | 3 cut(s) | 62, 160, 234 |
| CviJI | RGCY | 8 cut(s) | 7, 25, 32, 51, 128, 158, 188, 199 |
| CviKI_1 | RGCY | 8 cut(s) | 7, 25, 32, 51, 128, 158, 188, 199 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DpnI | GATC | 1 cut(s) | 122 |
| DpnII | GATC | 1 cut(s) | 120 |
| EaeI | YGGCCR | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 1 cut(s) | 159 |
| Eco147I | AGGCCT | 1 cut(s) | 7 |
| EcoT14I | CCWWGG | 1 cut(s) | 159 |
| ErhI | CCWWGG | 1 cut(s) | 159 |
| FaeI | CATG | 3 cut(s) | 65, 163, 237 |
| FaiI | YATR | 5 cut(s) | 29, 63, 101, 161, 235 |
| FatI | CATG | 3 cut(s) | 61, 159, 233 |
| Fnu4HI | GCNGC | 2 cut(s) | 49, 106 |
| FokI | GGATG | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 2 cut(s) | 49, 106 |
| GluI | GCNGC | 2 cut(s) | 49, 106 |
| HaeIII | GGCC | 3 cut(s) | 7, 51, 199 |
| HapII | CCGG | 2 cut(s) | 189, 261 |
| Hin1II | CATG | 3 cut(s) | 65, 163, 237 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HpaII | CCGG | 2 cut(s) | 189, 261 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188I | TCNGA | 3 cut(s) | 120, 125, 250 |
| HpyCH4III | ACNGT | 1 cut(s) | 273 |
| HpyCH4V | TGCA | 1 cut(s) | 181 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 38 |
| Hsp92II | CATG | 3 cut(s) | 65, 163, 237 |
| Kzo9I | GATC | 1 cut(s) | 120 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| LpnPI | CCDG | 6 cut(s) | 58, 86, 94, 126, 202, 232 |
| LweI | GCATC | 2 cut(s) | 168, 250 |
| MaeIII | GTNAC | 1 cut(s) | 68 |
| MalI | GATC | 1 cut(s) | 122 |
| MboI | GATC | 1 cut(s) | 120 |
| MluCI | AATT | 2 cut(s) | 10, 84 |
| MnlI | CCTC | 1 cut(s) | 28 |
| MseI | TTAA | 1 cut(s) | 255 |
| MslI | CAYNNNNRTG | 1 cut(s) | 164 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MspI | CCGG | 2 cut(s) | 189, 261 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 38 |
| NcoI | CCATGG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 120 |
| NlaIII | CATG | 3 cut(s) | 65, 163, 237 |
| NlaIV | GGNNCC | 1 cut(s) | 127 |
| NspI | RCATGY | 1 cut(s) | 237 |
| PceI | AGGCCT | 1 cut(s) | 7 |
| PinAI | ACCGGT | 1 cut(s) | 260 |
| PkrI | GCNGC | 2 cut(s) | 50, 107 |
| PspN4I | GGNNCC | 1 cut(s) | 127 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 1 cut(s) | 164 |
| SaqAI | TTAA | 1 cut(s) | 255 |
| SatI | GCNGC | 2 cut(s) | 49, 106 |
| Sau3AI | GATC | 1 cut(s) | 120 |
| SetI | ASST | 2 cut(s) | 27, 75 |
| SfaNI | GCATC | 2 cut(s) | 168, 250 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 2 cut(s) | 10, 84 |
| SseBI | AGGCCT | 1 cut(s) | 7 |
| SsiI | CCGC | 2 cut(s) | 48, 106 |
| StuI | AGGCCT | 1 cut(s) | 7 |
| StyI | CCWWGG | 1 cut(s) | 159 |
| TaaI | ACNGT | 1 cut(s) | 273 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 2 cut(s) | 10, 84 |
| TauI | GCSGC | 2 cut(s) | 51, 108 |
| Tru1I | TTAA | 1 cut(s) | 255 |
| Tru9I | TTAA | 1 cut(s) | 255 |
| TscAI | CASTG | 2 cut(s) | 178, 226 |
| TspRI | CASTG | 2 cut(s) | 178, 226 |
| XapI | RAATTY | 1 cut(s) | 84 |
| XceI | RCATGY | 1 cut(s) | 237 |