Prupe.6G071300_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
4870998 .. 4872638
1641 bp
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UTR
Exon/CDS
Intron
Prupe.6G071300.1

Sequence Viewer

Length: 1641 bp
ATGCGTCGTTTCAAAGGCCAGATACTCCCAGCGACTCTCCAGAACAACCCCATCATCCACCGTCCATTTCAATCAACGCCTGATTACTACACAAAGCTGATCGAAACCTACGCTCGTGATCGAGAATTGCACCCGGCGAGACTTCTCCACGCCCATTTAATCACCATTGGCTCTGCTCGCTCGACCCATTTGGCTTCCAAGCTCATCGCTTTGTACGCTGCCTGCGGCCAAATAGCCCATGCTCGTAAAGTGTTCGACAAAATTCCCCAAACGAACATACGCCGCTGGTTTGCTCTCATTGGAGCCTATGCTCGTTGTGGGTTTTATCAGCAGGCAATCGATGTGTTCTGGGAGATGCAAAGAAAGGTTTCAAGGCCCAACAAGATTGTTATCCCCAGTGTTCTCAAAGCATGTGGACACCTCTCTGATCTTAAAACCGGTAAGAAAATACACGCCGTGGTGCTCCGCTTCTCGTTTGAATTTGATGCTTTTGTTAGCAGTGCGCTCATTGATATGTACTCAAAGAATGGGCGGGTGGAGAAGGCACAACAAGTTTTCGATATGATGGTGGAGAAAGATTCGGTGGCTTTGAATGCTATGGTTTCGGGGTTTGCTCAACATGGTTTGGCTAGAGAAGCATTGCGTTTGGTGGAGAAAATGCAGCTACTGGGATTAAAGCCCAATTTGATAACTTGGAACAGTTTGGTTTCTGGGTTTTCACAGAAGGGTGATGAAGCATTGGCGTATCGAATTTTTAACCTAATGCAGGTTAACGGGATTGAGCCTGATGTTGTATCTTGGACTTCGGTTATATCTGGGTTTGTGCAGAACTTTCAGAACAACAAAGCTTTTCATACATTCAAGCAAATGTTGAGTCATGGACTCTGTCCAACTTCGAATACTATTAGTAGCCTCTTGCCTGCTTGTGCAGCTGTGACGGATGTGAAGCGTGGGAAGGAGATTCATGCCTACGCATTGGCGATAGGAGTTGAAGAAGATGTATATGTGAGGAGTGCTCTTGTTGACATGTATGCAAAATGCGGATTTATATACGAAGCAAAGGCATTGTTTTGCAAGATGTCTCAAAAGAACACGGTGACATGGAATTCGATGATTTTTGGATATGCGAATCATGGGTATTGTAATGAAGCAATCGAGCTTTTCAACCAGATGAAGATGGAAGACGATAAGAAACTTGATTACCTGACTTTCATGGCAGTTCTCACAGCTTGTTGTCATGCCGGAATGATCGAACTTGGAGAAAGCTTGTTCTATTTGATGCAGGAAAGGTATGGGATCGTGCCAAGACTAGAACATTTTGCATGCATGGTTGATCTTCTAGGTCGAGCAGGGAAACTCACTGAGGCTTATGATATGATTAAGGCAATGCCTATGGAGCCAGATTTGTTTGTATGGGGAGCGTTACTGGGAGCATGTCGGAATTATGGAAATATAGATCTTGCTGAAGTAGCAGCAAAGCATTTGTCGGAGTTAGAGCCGGAGAGTGCAGGTAACAATTTGCTGTTGTCAAGTCTGTATGCTGATTCTGGCAGTTGGGGGAATGTTGCAAGGTTGAAGAAAATGATGATGAAAAACAAGTTAAGGAAACTTCCAGGACGCAGTTGGATGGAAGCTGCCTGA

Protein Analysis

547

Amino Acids

61.4

Weight (kDa)

9.05

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 757, 1499
AciI CCGC 5 cut(s) 225, 283, 466, 532, 1041
AclWI GGATC 1 cut(s) 1304
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 4 cut(s) 261, 479, 750, 1105
AcuI CTGAAG 1 cut(s) 1485
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 2 cut(s) 215, 518
AfiI CCNNNNNNNGG 1 cut(s) 766
AflIII ACRYGT 1 cut(s) 1026
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 9 cut(s) 13, 71, 372, 479, 592, 862, 992, 1165, 1576
AjnI CCWGG 1 cut(s) 1612
AluBI AGCT 9 cut(s) 97, 202, 664, 848, 932, 1159, 1229, 1266, 1634
AluI AGCT 9 cut(s) 97, 202, 664, 848, 932, 1159, 1229, 1266, 1634
Alw21I GWGCWC 2 cut(s) 465, 1018
Alw26I GTCTC 2 cut(s) 133, 1086
AlwI GGATC 1 cut(s) 1304
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 3 cut(s) 16, 226, 374
ApeKI GCWGC 5 cut(s) 218, 661, 929, 1472, 1634
ApoI RAATTY 4 cut(s) 261, 479, 750, 1105
ArsI GACNNNNNNTTYG 6 cut(s) 859, 891, 1090, 1122, 1469, 1501
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 367
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 154, 740, 1108
AsuII TTCGAA 1 cut(s) 896
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1188
Bbv12I GWGCWC 2 cut(s) 465, 1018
BbvI GCAGC 5 cut(s) 205, 673, 941, 1484, 1621
BccI CCATC 4 cut(s) 59, 559, 1171, 1621
BceAI ACGGC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 1614
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 133, 1086
BfaI CTAG 3 cut(s) 630, 1310, 1340
BfuAI ACCTGC 2 cut(s) 757, 1499
BglII AGATCT 1 cut(s) 1456
BisI GCNGC 7 cut(s) 219, 226, 283, 662, 930, 1473, 1635
BlsI GCNGC 7 cut(s) 220, 227, 284, 663, 931, 1474, 1636
Bme1390I CCNGG 2 cut(s) 134, 1614
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 304, 1398
BmrFI CCNGG 2 cut(s) 134, 1614
BmrI ACTGGG 3 cut(s) 390, 677, 1436
BmsI GCATC 3 cut(s) 345, 475, 1269
BmuI ACTGGG 3 cut(s) 390, 677, 1436
BpiI GAAGAC 1 cut(s) 1188
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 396, 672, 1431
Bse3DI GCAATG 2 cut(s) 638, 1392
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 1 cut(s) 1614
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 3 cut(s) 54, 946, 1632
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMI GCAATG 2 cut(s) 638, 1392
BseMII CTCAG 1 cut(s) 1353
BseNI ACTGG 3 cut(s) 396, 672, 1431
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 5 cut(s) 205, 673, 941, 1484, 1621
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 3 cut(s) 845, 948, 1527
BshFI GGCC 3 cut(s) 18, 228, 376
BshTI ACCGGT 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 465, 1018
BsiSI CCGG 4 cut(s) 134, 438, 1242, 1499
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 2 cut(s) 133, 1086
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 18, 228, 376
Bsp119I TTCGAA 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 465, 1018
Bsp143I GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
BspACI CCGC 5 cut(s) 225, 283, 466, 532, 1041
BspANI GGCC 3 cut(s) 18, 228, 376
BspCNI CTCAG 1 cut(s) 1354
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 304, 1398
BspMI ACCTGC 2 cut(s) 757, 1499
BspPI GGATC 1 cut(s) 1304
BspT104I TTCGAA 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 638, 1392
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 3 cut(s) 396, 672, 1431
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
BssSI CACGAG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 1614
Bst4CI ACNGT 3 cut(s) 62, 701, 1096
BstBI TTCGAA 1 cut(s) 896
BstC8I GCNNGC 5 cut(s) 178, 223, 333, 921, 1324
BstDEI CTNAG 1 cut(s) 1362
BstDSI CCRYGG 1 cut(s) 456
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 3 cut(s) 54, 946, 1632
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 7 cut(s) 102, 121, 430, 1251, 1299, 1336, 1459
BstMAI GTCTC 2 cut(s) 133, 1086
BstMBI GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
BstMWI GCNNNNNNNGC 7 cut(s) 177, 215, 593, 635, 929, 1396, 1469
BstNI CCWGG 1 cut(s) 1614
BstNSI RCATGY 4 cut(s) 414, 1030, 1326, 1437
BstSCI CCNGG 2 cut(s) 132, 1612
BstV1I GCAGC 5 cut(s) 205, 673, 941, 1484, 1621
BstV2I GAAGAC 1 cut(s) 1188
BstX2I RGATCY 1 cut(s) 1456
BstYI RGATCY 1 cut(s) 1456
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 3 cut(s) 18, 228, 376
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 54, 946, 1632
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 3 cut(s) 403, 505, 1359
BveI ACCTGC 2 cut(s) 757, 1499
Cac8I GCNNGC 5 cut(s) 178, 223, 333, 921, 1324
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 1626
Csp6I GTAC 2 cut(s) 214, 517
CspAI ACCGGT 1 cut(s) 437
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviQI GTAC 2 cut(s) 214, 517
DdeI CTNAG 1 cut(s) 1362
DpnI GATC 7 cut(s) 101, 120, 429, 1250, 1298, 1335, 1458
DpnII GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 1485
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 1612
EcoT22I ATGCAT 1 cut(s) 1328
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 7 cut(s) 219, 226, 283, 662, 930, 1473, 1635
FokI GGATG 2 cut(s) 41, 953
Fsp4HI GCNGC 7 cut(s) 219, 226, 283, 662, 930, 1473, 1635
FspBI CTAG 3 cut(s) 630, 1310, 1340
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 219, 226, 283, 662, 930, 1473, 1635
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 3 cut(s) 18, 228, 376
HapII CCGG 4 cut(s) 134, 438, 1242, 1499
HgaI GACGC 1 cut(s) 1626
HhaI GCGC 1 cut(s) 505
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 2 cut(s) 772, 1024
HindII GTYRAC 2 cut(s) 772, 1024
HindIII AAGCTT 2 cut(s) 846, 1264
HinfI GANTC 7 cut(s) 34, 578, 874, 882, 961, 1129, 1544
HpaI GTTAAC 1 cut(s) 772
HpaII CCGG 4 cut(s) 134, 438, 1242, 1499
HphI GGTGA 3 cut(s) 154, 740, 1108
Hpy166II GTNNAC 3 cut(s) 416, 772, 1024
Hpy188I TCNGA 4 cut(s) 427, 837, 1440, 1489
Hpy188III TCNNGA 3 cut(s) 40, 116, 122
Hpy8I GTNNAC 3 cut(s) 416, 772, 1024
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 535, 718, 949
HpyCH4III ACNGT 3 cut(s) 62, 701, 1096
HpyF10VI GCNNNNNNNGC 7 cut(s) 177, 215, 593, 635, 929, 1396, 1469
HpyF3I CTNAG 1 cut(s) 1362
HspAI GCGC 1 cut(s) 503
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
LmnI GCTCC 5 cut(s) 302, 468, 1396, 1418, 1430
Lsp1109I GCAGC 5 cut(s) 205, 673, 941, 1484, 1621
LweI GCATC 3 cut(s) 345, 475, 1269
MaeI CTAG 3 cut(s) 630, 1310, 1340
MaeIII GTNAC 4 cut(s) 934, 1096, 1422, 1511
MalI GATC 7 cut(s) 101, 120, 429, 1250, 1298, 1335, 1458
MboI GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
MboII GAAGA 6 cut(s) 1004, 1007, 1186, 1193, 1328, 1588
MflI RGATCY 1 cut(s) 1456
MhlI GDGCHC 2 cut(s) 465, 1018
MluCI AATT 8 cut(s) 125, 261, 479, 682, 750, 1105, 1441, 1516
MlyI GAGTC 3 cut(s) 28, 876, 883
MmeI TCCRAC 4 cut(s) 914, 1418, 1467, 1604
MnlI CCTC 4 cut(s) 431, 923, 1002, 1357
Mph1103I ATGCAT 1 cut(s) 1328
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 7 cut(s) 158, 432, 674, 756, 771, 1380, 1601
MslI CAYNNNNRTG 1 cut(s) 512
MspA1I CMGCKG 2 cut(s) 285, 932
MspI CCGG 4 cut(s) 134, 438, 1242, 1499
MspR9I CCNGG 2 cut(s) 134, 1614
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 1614
MwoI GCNNNNNNNGC 7 cut(s) 177, 215, 593, 635, 929, 1396, 1469
NciI CCSGG 1 cut(s) 134
NdeII GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
NlaIV GGNNCC 2 cut(s) 304, 1398
NmuCI GTSAC 2 cut(s) 934, 1096
NsiI ATGCAT 1 cut(s) 1328
NspI RCATGY 4 cut(s) 414, 1030, 1326, 1437
NspV TTCGAA 1 cut(s) 896
PaeI GCATGC 1 cut(s) 1326
PciI ACATGT 1 cut(s) 1026
PctI GAATGC 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 4 cut(s) 578, 961, 1129, 1544
PflFI GACNNNGTC 1 cut(s) 885
PfoI TCCNGGA 1 cut(s) 1612
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 7 cut(s) 220, 227, 284, 663, 931, 1474, 1636
PleI GAGTC 3 cut(s) 28, 876, 882
PpsI GAGTC 3 cut(s) 28, 876, 882
PscI ACATGT 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 1612
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 1612
PspN4I GGNNCC 2 cut(s) 304, 1398
PspPI GGNCC 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 1 cut(s) 1456
PsyI GACNNNGTC 1 cut(s) 885
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 2 cut(s) 215, 518
RsaNI GTAC 2 cut(s) 214, 517
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 7 cut(s) 158, 432, 674, 756, 771, 1380, 1601
SatI GCNGC 7 cut(s) 219, 226, 283, 662, 930, 1473, 1635
Sau3AI GATC 7 cut(s) 99, 118, 427, 1248, 1296, 1333, 1456
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 3 cut(s) 28, 876, 883
ScrFI CCNGG 2 cut(s) 134, 1614
SduI GDGCHC 2 cut(s) 465, 1018
SfaNI GCATC 3 cut(s) 345, 475, 1269
SfuI TTCGAA 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 512
SphI GCATGC 1 cut(s) 1326
Sse9I AATT 8 cut(s) 125, 261, 479, 682, 750, 1105, 1441, 1516
SsiI CCGC 5 cut(s) 225, 283, 466, 532, 1041
SspMI CTAG 3 cut(s) 630, 1310, 1340
StyD4I CCNGG 2 cut(s) 132, 1612
TaaI ACNGT 3 cut(s) 62, 701, 1096
TasI AATT 8 cut(s) 125, 261, 479, 682, 750, 1105, 1441, 1516
TatI WGTACW 1 cut(s) 516
TauI GCSGC 2 cut(s) 228, 285
TfiI GAWTC 4 cut(s) 578, 961, 1129, 1544
Tru1I TTAA 7 cut(s) 158, 432, 674, 756, 771, 1380, 1601
Tru9I TTAA 7 cut(s) 158, 432, 674, 756, 771, 1380, 1601
TscAI CASTG 3 cut(s) 403, 505, 1366
TseFI GTSAC 2 cut(s) 934, 1096
TseI GCWGC 5 cut(s) 218, 661, 929, 1472, 1634
Tsp45I GTSAC 2 cut(s) 934, 1096
TspDTI ATGAA 7 cut(s) 747, 842, 953, 1161, 1187, 1201, 1604
TspGWI ACGGA 1 cut(s) 953
TspRI CASTG 3 cut(s) 403, 505, 1366
Tth111I GACNNNGTC 1 cut(s) 885
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 4 cut(s) 261, 479, 750, 1105
XceI RCATGY 4 cut(s) 414, 1030, 1326, 1437
XcmI CCANNNNNNNNNTGG 1 cut(s) 1620
XmnI GAANNNNTTC 1 cut(s) 367
XspI CTAG 3 cut(s) 630, 1310, 1340
Zsp2I ATGCAT 1 cut(s) 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.