Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59600 |
| fragaria_vesca | FvH4_3g36900 |
| malus_domestica | MD11G1095800.v1.1 |
| prunus_persica | Prupe.6G071300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0066131 RchiOBHm_Chr5g0066221 RchiOBHm_Chr5g0066241 RchiOBHm_Chr5g0066281 |
| rosa_laevigata | RLG00000035845 |
| rosa_multiflora | Rmu_sc0002406.1_g000015 Rmu_sc0019146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00014840 |
| rosa_rugosa | Rorug05G0376700 |
| rosa_samantha | Rh5AG435300 Rh5BG451400 Rh5CG473600 Rh5DG466100 |
| rosa_wichuraiana | Rw5G040750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 757, 1499 |
| AciI | CCGC | 5 cut(s) | 225, 283, 466, 532, 1041 |
| AclWI | GGATC | 1 cut(s) | 1304 |
| AcoI | YGGCCR | 1 cut(s) | 226 |
| AcsI | RAATTY | 4 cut(s) | 261, 479, 750, 1105 |
| AcuI | CTGAAG | 1 cut(s) | 1485 |
| AdeI | CACNNNGTG | 1 cut(s) | 457 |
| AfaI | GTAC | 2 cut(s) | 215, 518 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 766 |
| AflIII | ACRYGT | 1 cut(s) | 1026 |
| AgeI | ACCGGT | 1 cut(s) | 437 |
| AgsI | TTSAA | 9 cut(s) | 13, 71, 372, 479, 592, 862, 992, 1165, 1576 |
| AjnI | CCWGG | 1 cut(s) | 1612 |
| AluBI | AGCT | 9 cut(s) | 97, 202, 664, 848, 932, 1159, 1229, 1266, 1634 |
| AluI | AGCT | 9 cut(s) | 97, 202, 664, 848, 932, 1159, 1229, 1266, 1634 |
| Alw21I | GWGCWC | 2 cut(s) | 465, 1018 |
| Alw26I | GTCTC | 2 cut(s) | 133, 1086 |
| AlwI | GGATC | 1 cut(s) | 1304 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 667 |
| AoxI | GGCC | 3 cut(s) | 16, 226, 374 |
| ApeKI | GCWGC | 5 cut(s) | 218, 661, 929, 1472, 1634 |
| ApoI | RAATTY | 4 cut(s) | 261, 479, 750, 1105 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 859, 891, 1090, 1122, 1469, 1501 |
| AsiGI | ACCGGT | 1 cut(s) | 437 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 367 |
| AspLEI | GCGC | 1 cut(s) | 505 |
| AspS9I | GGNCC | 1 cut(s) | 375 |
| AsuC2I | CCSGG | 1 cut(s) | 134 |
| AsuHPI | GGTGA | 3 cut(s) | 154, 740, 1108 |
| AsuII | TTCGAA | 1 cut(s) | 896 |
| BauI | CACGAG | 1 cut(s) | 114 |
| BbsI | GAAGAC | 1 cut(s) | 1188 |
| Bbv12I | GWGCWC | 2 cut(s) | 465, 1018 |
| BbvI | GCAGC | 5 cut(s) | 205, 673, 941, 1484, 1621 |
| BccI | CCATC | 4 cut(s) | 59, 559, 1171, 1621 |
| BceAI | ACGGC | 1 cut(s) | 440 |
| BciT130I | CCWGG | 1 cut(s) | 1614 |
| BcnI | CCSGG | 1 cut(s) | 134 |
| BcoDI | GTCTC | 2 cut(s) | 133, 1086 |
| BfaI | CTAG | 3 cut(s) | 630, 1310, 1340 |
| BfuAI | ACCTGC | 2 cut(s) | 757, 1499 |
| BglII | AGATCT | 1 cut(s) | 1456 |
| BisI | GCNGC | 7 cut(s) | 219, 226, 283, 662, 930, 1473, 1635 |
| BlsI | GCNGC | 7 cut(s) | 220, 227, 284, 663, 931, 1474, 1636 |
| Bme1390I | CCNGG | 2 cut(s) | 134, 1614 |
| BmgT120I | GGNCC | 1 cut(s) | 375 |
| BmiI | GGNNCC | 2 cut(s) | 304, 1398 |
| BmrFI | CCNGG | 2 cut(s) | 134, 1614 |
| BmrI | ACTGGG | 3 cut(s) | 390, 677, 1436 |
| BmsI | GCATC | 3 cut(s) | 345, 475, 1269 |
| BmuI | ACTGGG | 3 cut(s) | 390, 677, 1436 |
| BpiI | GAAGAC | 1 cut(s) | 1188 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1000, 1032 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| Bpu14I | TTCGAA | 1 cut(s) | 896 |
| BpuMI | CCSGG | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 339 |
| BsaBI | GATNNNNATC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| BsaWI | WCCGGW | 1 cut(s) | 437 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 766 |
| Bse118I | RCCGGY | 1 cut(s) | 437 |
| Bse1I | ACTGG | 3 cut(s) | 396, 672, 1431 |
| Bse3DI | GCAATG | 2 cut(s) | 638, 1392 |
| Bse8I | GATNNNNATC | 1 cut(s) | 389 |
| BseBI | CCWGG | 1 cut(s) | 1614 |
| BseCI | ATCGAT | 1 cut(s) | 339 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseGI | GGATG | 3 cut(s) | 54, 946, 1632 |
| BseJI | GATNNNNATC | 1 cut(s) | 389 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 766 |
| BseMI | GCAATG | 2 cut(s) | 638, 1392 |
| BseMII | CTCAG | 1 cut(s) | 1353 |
| BseNI | ACTGG | 3 cut(s) | 396, 672, 1431 |
| BseRI | GAGGAG | 1 cut(s) | 1024 |
| BseXI | GCAGC | 5 cut(s) | 205, 673, 941, 1484, 1621 |
| BseYI | CCCAGC | 1 cut(s) | 28 |
| BsgI | GTGCAG | 3 cut(s) | 845, 948, 1527 |
| BshFI | GGCC | 3 cut(s) | 18, 228, 376 |
| BshTI | ACCGGT | 1 cut(s) | 437 |
| BshVI | ATCGAT | 1 cut(s) | 339 |
| BsiHKAI | GWGCWC | 2 cut(s) | 465, 1018 |
| BsiSI | CCGG | 4 cut(s) | 134, 438, 1242, 1499 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 766 |
| BsmAI | GTCTC | 2 cut(s) | 133, 1086 |
| BsmI | GAATGC | 1 cut(s) | 598 |
| BsnI | GGCC | 3 cut(s) | 18, 228, 376 |
| Bsp119I | TTCGAA | 1 cut(s) | 896 |
| Bsp1286I | GDGCHC | 2 cut(s) | 465, 1018 |
| Bsp143I | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| BspACI | CCGC | 5 cut(s) | 225, 283, 466, 532, 1041 |
| BspANI | GGCC | 3 cut(s) | 18, 228, 376 |
| BspCNI | CTCAG | 1 cut(s) | 1354 |
| BspDI | ATCGAT | 1 cut(s) | 339 |
| BspLI | GGNNCC | 2 cut(s) | 304, 1398 |
| BspMI | ACCTGC | 2 cut(s) | 757, 1499 |
| BspPI | GGATC | 1 cut(s) | 1304 |
| BspT104I | TTCGAA | 1 cut(s) | 896 |
| BsrDI | GCAATG | 2 cut(s) | 638, 1392 |
| BsrFI | RCCGGY | 1 cut(s) | 437 |
| BsrI | ACTGG | 3 cut(s) | 396, 672, 1431 |
| BssAI | RCCGGY | 1 cut(s) | 437 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssMI | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| BssSI | CACGAG | 1 cut(s) | 114 |
| Bst2BI | CACGAG | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 1 cut(s) | 1614 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 701, 1096 |
| BstBI | TTCGAA | 1 cut(s) | 896 |
| BstC8I | GCNNGC | 5 cut(s) | 178, 223, 333, 921, 1324 |
| BstDEI | CTNAG | 1 cut(s) | 1362 |
| BstDSI | CCRYGG | 1 cut(s) | 456 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 764 |
| BstF5I | GGATG | 3 cut(s) | 54, 946, 1632 |
| BstHHI | GCGC | 1 cut(s) | 505 |
| BstKTI | GATC | 7 cut(s) | 102, 121, 430, 1251, 1299, 1336, 1459 |
| BstMAI | GTCTC | 2 cut(s) | 133, 1086 |
| BstMBI | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 177, 215, 593, 635, 929, 1396, 1469 |
| BstNI | CCWGG | 1 cut(s) | 1614 |
| BstNSI | RCATGY | 4 cut(s) | 414, 1030, 1326, 1437 |
| BstSCI | CCNGG | 2 cut(s) | 132, 1612 |
| BstV1I | GCAGC | 5 cut(s) | 205, 673, 941, 1484, 1621 |
| BstV2I | GAAGAC | 1 cut(s) | 1188 |
| BstX2I | RGATCY | 1 cut(s) | 1456 |
| BstYI | RGATCY | 1 cut(s) | 1456 |
| Bsu15I | ATCGAT | 1 cut(s) | 339 |
| BsuRI | GGCC | 3 cut(s) | 18, 228, 376 |
| BsuTUI | ATCGAT | 1 cut(s) | 339 |
| BtgI | CCRYGG | 1 cut(s) | 456 |
| BtgZI | GCGATG | 1 cut(s) | 190 |
| BtsCI | GGATG | 3 cut(s) | 54, 946, 1632 |
| BtsI | GCAGTG | 1 cut(s) | 505 |
| BtsIMutI | CAGTG | 3 cut(s) | 403, 505, 1359 |
| BveI | ACCTGC | 2 cut(s) | 757, 1499 |
| Cac8I | GCNNGC | 5 cut(s) | 178, 223, 333, 921, 1324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 667 |
| CfoI | GCGC | 1 cut(s) | 505 |
| Cfr10I | RCCGGY | 1 cut(s) | 437 |
| Cfr13I | GGNCC | 1 cut(s) | 375 |
| ClaI | ATCGAT | 1 cut(s) | 339 |
| CseI | GACGC | 1 cut(s) | 1626 |
| Csp6I | GTAC | 2 cut(s) | 214, 517 |
| CspAI | ACCGGT | 1 cut(s) | 437 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 394, 429 |
| CviQI | GTAC | 2 cut(s) | 214, 517 |
| DdeI | CTNAG | 1 cut(s) | 1362 |
| DpnI | GATC | 7 cut(s) | 101, 120, 429, 1250, 1298, 1335, 1458 |
| DpnII | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| DraIII | CACNNNGTG | 1 cut(s) | 457 |
| EaeI | YGGCCR | 1 cut(s) | 226 |
| Eco57I | CTGAAG | 1 cut(s) | 1485 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 764 |
| EcoRI | GAATTC | 1 cut(s) | 1105 |
| EcoRII | CCWGG | 1 cut(s) | 1612 |
| EcoT22I | ATGCAT | 1 cut(s) | 1328 |
| FauI | CCCGC | 1 cut(s) | 525 |
| Fnu4HI | GCNGC | 7 cut(s) | 219, 226, 283, 662, 930, 1473, 1635 |
| FokI | GGATG | 2 cut(s) | 41, 953 |
| Fsp4HI | GCNGC | 7 cut(s) | 219, 226, 283, 662, 930, 1473, 1635 |
| FspBI | CTAG | 3 cut(s) | 630, 1310, 1340 |
| GlaI | GCGC | 1 cut(s) | 504 |
| GluI | GCNGC | 7 cut(s) | 219, 226, 283, 662, 930, 1473, 1635 |
| GsaI | CCCAGC | 1 cut(s) | 32 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 3 cut(s) | 18, 228, 376 |
| HapII | CCGG | 4 cut(s) | 134, 438, 1242, 1499 |
| HgaI | GACGC | 1 cut(s) | 1626 |
| HhaI | GCGC | 1 cut(s) | 505 |
| Hin6I | GCGC | 1 cut(s) | 503 |
| HinP1I | GCGC | 1 cut(s) | 503 |
| HincII | GTYRAC | 2 cut(s) | 772, 1024 |
| HindII | GTYRAC | 2 cut(s) | 772, 1024 |
| HindIII | AAGCTT | 2 cut(s) | 846, 1264 |
| HinfI | GANTC | 7 cut(s) | 34, 578, 874, 882, 961, 1129, 1544 |
| HpaI | GTTAAC | 1 cut(s) | 772 |
| HpaII | CCGG | 4 cut(s) | 134, 438, 1242, 1499 |
| HphI | GGTGA | 3 cut(s) | 154, 740, 1108 |
| Hpy166II | GTNNAC | 3 cut(s) | 416, 772, 1024 |
| Hpy188I | TCNGA | 4 cut(s) | 427, 837, 1440, 1489 |
| Hpy188III | TCNNGA | 3 cut(s) | 40, 116, 122 |
| Hpy8I | GTNNAC | 3 cut(s) | 416, 772, 1024 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 535, 718, 949 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 701, 1096 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 177, 215, 593, 635, 929, 1396, 1469 |
| HpyF3I | CTNAG | 1 cut(s) | 1362 |
| HspAI | GCGC | 1 cut(s) | 503 |
| KspAI | GTTAAC | 1 cut(s) | 772 |
| Kzo9I | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| LmnI | GCTCC | 5 cut(s) | 302, 468, 1396, 1418, 1430 |
| Lsp1109I | GCAGC | 5 cut(s) | 205, 673, 941, 1484, 1621 |
| LweI | GCATC | 3 cut(s) | 345, 475, 1269 |
| MaeI | CTAG | 3 cut(s) | 630, 1310, 1340 |
| MaeIII | GTNAC | 4 cut(s) | 934, 1096, 1422, 1511 |
| MalI | GATC | 7 cut(s) | 101, 120, 429, 1250, 1298, 1335, 1458 |
| MboI | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| MboII | GAAGA | 6 cut(s) | 1004, 1007, 1186, 1193, 1328, 1588 |
| MflI | RGATCY | 1 cut(s) | 1456 |
| MhlI | GDGCHC | 2 cut(s) | 465, 1018 |
| MluCI | AATT | 8 cut(s) | 125, 261, 479, 682, 750, 1105, 1441, 1516 |
| MlyI | GAGTC | 3 cut(s) | 28, 876, 883 |
| MmeI | TCCRAC | 4 cut(s) | 914, 1418, 1467, 1604 |
| MnlI | CCTC | 4 cut(s) | 431, 923, 1002, 1357 |
| Mph1103I | ATGCAT | 1 cut(s) | 1328 |
| MroXI | GAANNNNTTC | 1 cut(s) | 367 |
| MseI | TTAA | 7 cut(s) | 158, 432, 674, 756, 771, 1380, 1601 |
| MslI | CAYNNNNRTG | 1 cut(s) | 512 |
| MspA1I | CMGCKG | 2 cut(s) | 285, 932 |
| MspI | CCGG | 4 cut(s) | 134, 438, 1242, 1499 |
| MspR9I | CCNGG | 2 cut(s) | 134, 1614 |
| Mva1269I | GAATGC | 1 cut(s) | 598 |
| MvaI | CCWGG | 1 cut(s) | 1614 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 177, 215, 593, 635, 929, 1396, 1469 |
| NciI | CCSGG | 1 cut(s) | 134 |
| NdeII | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| NlaIV | GGNNCC | 2 cut(s) | 304, 1398 |
| NmuCI | GTSAC | 2 cut(s) | 934, 1096 |
| NsiI | ATGCAT | 1 cut(s) | 1328 |
| NspI | RCATGY | 4 cut(s) | 414, 1030, 1326, 1437 |
| NspV | TTCGAA | 1 cut(s) | 896 |
| PaeI | GCATGC | 1 cut(s) | 1326 |
| PciI | ACATGT | 1 cut(s) | 1026 |
| PctI | GAATGC | 1 cut(s) | 598 |
| PdmI | GAANNNNTTC | 1 cut(s) | 367 |
| PfeI | GAWTC | 4 cut(s) | 578, 961, 1129, 1544 |
| PflFI | GACNNNGTC | 1 cut(s) | 885 |
| PfoI | TCCNGGA | 1 cut(s) | 1612 |
| PinAI | ACCGGT | 1 cut(s) | 437 |
| PkrI | GCNGC | 7 cut(s) | 220, 227, 284, 663, 931, 1474, 1636 |
| PleI | GAGTC | 3 cut(s) | 28, 876, 882 |
| PpsI | GAGTC | 3 cut(s) | 28, 876, 882 |
| PscI | ACATGT | 1 cut(s) | 1026 |
| Psp6I | CCWGG | 1 cut(s) | 1612 |
| PspFI | CCCAGC | 1 cut(s) | 28 |
| PspGI | CCWGG | 1 cut(s) | 1612 |
| PspN4I | GGNNCC | 2 cut(s) | 304, 1398 |
| PspPI | GGNCC | 1 cut(s) | 375 |
| PstNI | CAGNNNCTG | 1 cut(s) | 667 |
| PsuI | RGATCY | 1 cut(s) | 1456 |
| PsyI | GACNNNGTC | 1 cut(s) | 885 |
| PvuII | CAGCTG | 1 cut(s) | 932 |
| RsaI | GTAC | 2 cut(s) | 215, 518 |
| RsaNI | GTAC | 2 cut(s) | 214, 517 |
| RseI | CAYNNNNRTG | 1 cut(s) | 512 |
| SaqAI | TTAA | 7 cut(s) | 158, 432, 674, 756, 771, 1380, 1601 |
| SatI | GCNGC | 7 cut(s) | 219, 226, 283, 662, 930, 1473, 1635 |
| Sau3AI | GATC | 7 cut(s) | 99, 118, 427, 1248, 1296, 1333, 1456 |
| Sau96I | GGNCC | 1 cut(s) | 375 |
| SchI | GAGTC | 3 cut(s) | 28, 876, 883 |
| ScrFI | CCNGG | 2 cut(s) | 134, 1614 |
| SduI | GDGCHC | 2 cut(s) | 465, 1018 |
| SfaNI | GCATC | 3 cut(s) | 345, 475, 1269 |
| SfuI | TTCGAA | 1 cut(s) | 896 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 512 |
| SphI | GCATGC | 1 cut(s) | 1326 |
| Sse9I | AATT | 8 cut(s) | 125, 261, 479, 682, 750, 1105, 1441, 1516 |
| SsiI | CCGC | 5 cut(s) | 225, 283, 466, 532, 1041 |
| SspMI | CTAG | 3 cut(s) | 630, 1310, 1340 |
| StyD4I | CCNGG | 2 cut(s) | 132, 1612 |
| TaaI | ACNGT | 3 cut(s) | 62, 701, 1096 |
| TasI | AATT | 8 cut(s) | 125, 261, 479, 682, 750, 1105, 1441, 1516 |
| TatI | WGTACW | 1 cut(s) | 516 |
| TauI | GCSGC | 2 cut(s) | 228, 285 |
| TfiI | GAWTC | 4 cut(s) | 578, 961, 1129, 1544 |
| Tru1I | TTAA | 7 cut(s) | 158, 432, 674, 756, 771, 1380, 1601 |
| Tru9I | TTAA | 7 cut(s) | 158, 432, 674, 756, 771, 1380, 1601 |
| TscAI | CASTG | 3 cut(s) | 403, 505, 1366 |
| TseFI | GTSAC | 2 cut(s) | 934, 1096 |
| TseI | GCWGC | 5 cut(s) | 218, 661, 929, 1472, 1634 |
| Tsp45I | GTSAC | 2 cut(s) | 934, 1096 |
| TspDTI | ATGAA | 7 cut(s) | 747, 842, 953, 1161, 1187, 1201, 1604 |
| TspGWI | ACGGA | 1 cut(s) | 953 |
| TspRI | CASTG | 3 cut(s) | 403, 505, 1366 |
| Tth111I | GACNNNGTC | 1 cut(s) | 885 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 764 |
| XapI | RAATTY | 4 cut(s) | 261, 479, 750, 1105 |
| XceI | RCATGY | 4 cut(s) | 414, 1030, 1326, 1437 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1620 |
| XmnI | GAANNNNTTC | 1 cut(s) | 367 |
| XspI | CTAG | 3 cut(s) | 630, 1310, 1340 |
| Zsp2I | ATGCAT | 1 cut(s) | 1328 |