FvH4_3g36900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31597670 .. 31599268
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36900.t1

Sequence Viewer

Length: 1599 bp
ATGACTCCCTTCACCCACCGTGCTTTTCAATCCTCGCCTGACCTGTACACAAAGCTGATCGGAATCTACTCCCGTGATCGTGAACTGAACTCAGCAAGACTACTCCACGCCCATTTGATCACCACCGGGTTGGCCCGTCTGACCCATTTCGCCTCCAAGCTCATTGCTCTATACTCTGCCTGCGGCCAACTAACCCAAGCCCGGAACCTGTTCGATGGAATTCCCAAGACGAACATACGCCGCTGGTTTGCTCTGATCGGAGCCTACGCTCGCTCTGGGTTTTACCAGCAGGCAATGGATGTGTTCAGTGAGATGCAAAGAGAGGGTTGTAGACCCAATAGGATTGTTATTCCCAGTGTTCTCAAGGCATGTGGGCATTTGTCTGATGTCGGAACCGGTGAGAAGCTTCATGCTGTTGTGCTCAGGCACGCGTTTGAGTTTGATGCTTTTGTTAGTAGTGCAATTATTGACATGTACTCGAAGAATGGGAGAGTGGAGAAGGCGCGGCGGGTTTTTGATATGATGGTTGATAAAGACTCGGTGGCTTTGAATGCTGTTGTTTCGGGGTTTTGTCAGCGTGGCATGGCGGATGAAGCATTGGTTTTGTTGGAGGAAATGCAGGTGGTGGGGATTAAGGCTAATTTGATTACTTGGAACACTTTGGTTGCTGGGTTTTCGCAGAAGGGTGATGAGGCAATGGCGTCTAGGCTGTTTAAGTTGATGCCCGTGGATGGGATTGAACCTGATGTTGTGTCGTGGACTTCGGTTATATCTGGGTTTGTGAAGAATTTTCAGAATAGTAAGGCTTTTCACACATTTAAGCAGATGCTGGATAGTGGAATATTGCCAACTCCGGCTACAATCAGTAGCCTCTTGCCTGCTTGTGCAGCTGTGACAAACTTGCGGTGTGGTAAGGAGATACATGCTTATGCATTGGTGATTGGAGTTGAAGCTGATGTATATGTGAGGAGTGCTCTTGTTGATATGTATGCTAAATGTGGATTTATATACGAAGCAAAGACATTGTTTTGCAGGATGTCTGAAAGGAACACGGTAACATGGAACTCAATGATTTTTGGATACGCGAATCATGGGTATTGCACTGAAGCAATAGAGCTTTTCAACAAGATGAAGACAGAAGACAGCATGAAACTTGATTACTTGACCTTTGTTGCCGTCCTTACTGCTTGTTGTCATGCTGGGATGATTGAGCTTGGCAAAAGCTTGTTTAGATTGATGCAGGAAGACCATGGGATCATGCCAAGACTAGAACATTATGCATGTATGGTTGATCTTCTAGGTCGAGCAGGGAATCTCACTGAGGCATATGACATGATTAAGGCGATGCCTATGGAGCCAGATTTGTTTGTATGGGGAGCATTATTAGGAGCAAGTCGGAATTACGGGAATATTGAACTTGCTGAGGTAGCAGCTAAGCATTTATCAGAACTAGAGCCGGATAGTGCAGGAAACAATTTGCTATTATCCAGTCTATATGCGGATGCTGGAAACTGGATAAATGTTGCAAGGTTGAAAAAAATGATGAAGAAAAAGAAGTTAAGGAAATTACCAGGATGCAGCTGGACGGAAGCTGCCTGA

Protein Analysis

533

Amino Acids

59.13

Weight (kDa)

8.44

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 76 - 125 3.4e-07 Pentatricopeptide repeat domain
PPR PF01535 84 - 110 9.7e-06 PPR repeat
PPR_2 PF13041 84 - 124 1.8e-06 PPR repeat family
PPR_2 PF13041 178 - 225 4.1e-09 PPR repeat family
PPR_1 PF12854 179 - 207 5.9e-06 PPR repeat
PPR_long PF17177 194 - 298 2.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 202 - 263 1.4e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 214 - 262 1.1e-09 PPR repeat family
PPR_2 PF13041 248 - 296 3.2e-10 PPR repeat family
PPR_2 PF13041 349 - 399 8.4e-10 PPR repeat family
PPR_1 PF12854 349 - 378 2e-06 PPR repeat
PPR PF01535 352 - 380 1.1e-08 PPR repeat
E_motif PF20431 468 - 530 9.8e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 331
AccII CGCG 3 cut(s) 431, 505, 1085
AciI CCGC 7 cut(s) 183, 241, 505, 508, 587, 904, 1499
AclWI GGATC 1 cut(s) 1262
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 219, 787
AcuI CTGAAG 1 cut(s) 1125
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 2 cut(s) 47, 476
AfiI CCNNNNNNNGG 3 cut(s) 201, 731, 732
AflIII ACRYGT 2 cut(s) 429, 471
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 7 cut(s) 29, 550, 740, 950, 1123, 1415, 1534
AjnI CCWGG 1 cut(s) 1570
Alw21I GWGCWC 2 cut(s) 423, 976
AlwI GGATC 1 cut(s) 1262
AlwNI CAGNNNCTG 1 cut(s) 829
AoxI GGCC 2 cut(s) 132, 184
ApeKI GCWGC 4 cut(s) 887, 1430, 1578, 1592
ApoI RAATTY 2 cut(s) 219, 787
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 127, 202
AsuHPI GGTGA 5 cut(s) 4, 112, 410, 698, 949
BbsI GAAGAC 3 cut(s) 1139, 1146, 1251
Bbv12I GWGCWC 2 cut(s) 423, 976
BbvCI CCTCAGC 1 cut(s) 1422
BbvI GCAGC 4 cut(s) 899, 1442, 1579, 1590
BccI CCATC 3 cut(s) 209, 517, 725
BceAI ACGGC 1 cut(s) 1160
BciT130I CCWGG 1 cut(s) 1572
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 127, 202
BfaI CTAG 4 cut(s) 705, 1268, 1298, 1451
BfuAI ACCTGC 1 cut(s) 610
BfuI GTATCC 1 cut(s) 1073
BisI GCNGC 7 cut(s) 184, 241, 506, 888, 1431, 1579, 1593
BlpI GCTNAGC 1 cut(s) 1434
BlsI GCNGC 7 cut(s) 185, 242, 507, 889, 1432, 1580, 1594
Bme1390I CCNGG 3 cut(s) 127, 202, 1572
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 4 cut(s) 206, 262, 394, 1356
BmrFI CCNGG 3 cut(s) 127, 202, 1572
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 8 cut(s) 303, 433, 711, 816, 1227, 1335, 1492, 1565
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 3 cut(s) 1139, 1146, 1251
BplI GAGNNNNNCTC 2 cut(s) 958, 990
Bpu10I CCTNAGC 2 cut(s) 422, 1422
Bpu1102I GCTNAGC 1 cut(s) 1434
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 127, 202
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 726, 1249
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 731, 732
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 354, 1488, 1517
Bse3DI GCAATG 3 cut(s) 162, 300, 702
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 1572
BseDI CCNNGG 2 cut(s) 726, 1249
BseGI GGATG 7 cut(s) 304, 595, 736, 1041, 1209, 1507, 1580
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 201, 731, 732
BseMI GCAATG 3 cut(s) 162, 300, 702
BseMII CTCAG 4 cut(s) 105, 436, 1311, 1413
BseNI ACTGG 3 cut(s) 354, 1488, 1517
BseRI GAGGAG 1 cut(s) 982
BseXI GCAGC 4 cut(s) 899, 1442, 1579, 1590
BseYI CCCAGC 2 cut(s) 668, 1199
BsgI GTGCAG 2 cut(s) 906, 1485
Bsh1236I CGCG 3 cut(s) 431, 505, 1085
BshFI GGCC 2 cut(s) 134, 186
BshTI ACCGGT 1 cut(s) 395
BsiHKAI GWGCWC 2 cut(s) 423, 976
BsiSI CCGG 5 cut(s) 126, 202, 396, 854, 1457
BslI CCNNNNNNNGG 3 cut(s) 201, 731, 732
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 2 cut(s) 134, 186
Bsp1286I GDGCHC 2 cut(s) 423, 976
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
Bsp1720I GCTNAGC 1 cut(s) 1434
Bsp19I CCATGG 1 cut(s) 1249
BspACI CCGC 7 cut(s) 183, 241, 505, 508, 587, 904, 1499
BspANI GGCC 2 cut(s) 134, 186
BspCNI CTCAG 4 cut(s) 104, 435, 1312, 1414
BspFNI CGCG 3 cut(s) 431, 505, 1085
BspLI GGNNCC 4 cut(s) 206, 262, 394, 1356
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 1 cut(s) 1262
BsrDI GCAATG 3 cut(s) 162, 300, 702
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 3 cut(s) 354, 1488, 1517
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 726, 1249
BssMI GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 1249
Bst2UI CCWGG 1 cut(s) 1572
Bst4CI ACNGT 2 cut(s) 20, 1054
BstACI GRCGYC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 5 cut(s) 181, 271, 291, 429, 879
BstDEI CTNAG 5 cut(s) 91, 422, 1320, 1422, 1434
BstDSI CCRYGG 2 cut(s) 726, 1249
BstF5I GGATG 7 cut(s) 304, 595, 736, 1041, 1209, 1507, 1580
BstFNI CGCG 3 cut(s) 431, 505, 1085
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 6 cut(s) 60, 79, 120, 258, 1257, 1294
BstMBI GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
BstMWI GCNNNNNNNGC 5 cut(s) 551, 593, 887, 1354, 1427
BstNI CCWGG 1 cut(s) 1572
BstNSI RCATGY 4 cut(s) 372, 475, 926, 1284
BstSCI CCNGG 3 cut(s) 125, 200, 1570
BstUI CGCG 3 cut(s) 431, 505, 1085
BstV1I GCAGC 4 cut(s) 899, 1442, 1579, 1590
BstV2I GAAGAC 3 cut(s) 1139, 1146, 1251
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 2 cut(s) 134, 186
BtgI CCRYGG 2 cut(s) 726, 1249
BtgZI GCGATG 1 cut(s) 1358
BtsCI GGATG 7 cut(s) 304, 595, 736, 1041, 1209, 1507, 1580
BtsIMutI CAGTG 4 cut(s) 313, 361, 1101, 1317
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 5 cut(s) 181, 271, 291, 429, 879
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 690
Csp6I GTAC 2 cut(s) 46, 475
CspAI ACCGGT 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviQI GTAC 2 cut(s) 46, 475
DdeI CTNAG 5 cut(s) 91, 422, 1320, 1422, 1434
DpnI GATC 6 cut(s) 59, 78, 119, 257, 1256, 1293
DpnII GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
EaeI YGGCCR 1 cut(s) 184
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 1249
Eco57I CTGAAG 1 cut(s) 1125
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 1570
EcoT14I CCWWGG 1 cut(s) 1249
EcoT22I ATGCAT 2 cut(s) 934, 1282
ErhI CCWWGG 1 cut(s) 1249
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 1327
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 7 cut(s) 184, 241, 506, 888, 1431, 1579, 1593
FokI GGATG 7 cut(s) 311, 602, 743, 1048, 1216, 1514, 1587
Fsp4HI GCNGC 7 cut(s) 184, 241, 506, 888, 1431, 1579, 1593
FspBI CTAG 4 cut(s) 705, 1268, 1298, 1451
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 184, 241, 506, 888, 1431, 1579, 1593
GsaI CCCAGC 2 cut(s) 672, 1203
HaeIII GGCC 2 cut(s) 134, 186
HapII CCGG 5 cut(s) 126, 202, 396, 854, 1457
HgaI GACGC 1 cut(s) 690
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 701
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 2 cut(s) 404, 1222
HinfI GANTC 5 cut(s) 4, 63, 536, 1087, 1312
HpaII CCGG 5 cut(s) 126, 202, 396, 854, 1457
HphI GGTGA 5 cut(s) 4, 112, 410, 698, 949
Hpy166II GTNNAC 4 cut(s) 48, 83, 332, 759
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 4 cut(s) 48, 83, 332, 759
HpyAV CCTTC 3 cut(s) 19, 493, 676
HpyCH4III ACNGT 2 cut(s) 20, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 551, 593, 887, 1354, 1427
HpyF3I CTNAG 5 cut(s) 91, 422, 1320, 1422, 1434
Hsp92I GRCGYC 1 cut(s) 701
HspAI GCGC 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
LmnI GCTCC 4 cut(s) 260, 1354, 1376, 1388
Lsp1109I GCAGC 4 cut(s) 899, 1442, 1579, 1590
LweI GCATC 8 cut(s) 303, 433, 711, 816, 1227, 1335, 1492, 1565
MaeI CTAG 4 cut(s) 705, 1268, 1298, 1451
MaeIII GTNAC 2 cut(s) 892, 1054
MalI GATC 6 cut(s) 59, 78, 119, 257, 1256, 1293
MboI GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
MboII GAAGA 7 cut(s) 493, 796, 1144, 1151, 1256, 1286, 1558
MhlI GDGCHC 2 cut(s) 423, 976
MluCI AATT 7 cut(s) 219, 462, 640, 787, 1399, 1474, 1565
MluI ACGCGT 1 cut(s) 429
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 3 cut(s) 370, 588, 1376
MnlI CCTC 9 cut(s) 43, 163, 316, 604, 685, 881, 960, 1315, 1417
Mph1103I ATGCAT 2 cut(s) 934, 1282
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 5 cut(s) 633, 714, 819, 1338, 1559
MslI CAYNNNNRTG 1 cut(s) 927
MspA1I CMGCKG 3 cut(s) 243, 890, 1581
MspI CCGG 5 cut(s) 126, 202, 396, 854, 1457
MspR9I CCNGG 3 cut(s) 127, 202, 1572
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 1572
MvnI CGCG 3 cut(s) 431, 505, 1085
MwoI GCNNNNNNNGC 5 cut(s) 551, 593, 887, 1354, 1427
NciI CCSGG 2 cut(s) 127, 202
NcoI CCATGG 1 cut(s) 1249
NdeI CATATG 1 cut(s) 1327
NdeII GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
NlaIV GGNNCC 4 cut(s) 206, 262, 394, 1356
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 2 cut(s) 934, 1282
NspI RCATGY 4 cut(s) 372, 475, 926, 1284
PaqCI CACCTGC 1 cut(s) 610
PciI ACATGT 1 cut(s) 471
PctI GAATGC 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 63, 1087, 1312
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 7 cut(s) 185, 242, 507, 889, 1432, 1580, 1594
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PscI ACATGT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 1570
PspFI CCCAGC 2 cut(s) 668, 1199
PspGI CCWGG 1 cut(s) 1570
PspN4I GGNNCC 4 cut(s) 206, 262, 394, 1356
PspPI GGNCC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 829
PvuII CAGCTG 2 cut(s) 890, 1581
RsaI GTAC 2 cut(s) 47, 476
RsaNI GTAC 2 cut(s) 46, 475
RseI CAYNNNNRTG 1 cut(s) 927
SaqAI TTAA 5 cut(s) 633, 714, 819, 1338, 1559
SatI GCNGC 7 cut(s) 184, 241, 506, 888, 1431, 1579, 1593
Sau3AI GATC 6 cut(s) 57, 76, 117, 255, 1254, 1291
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 3 cut(s) 127, 202, 1572
SduI GDGCHC 2 cut(s) 423, 976
SfaNI GCATC 8 cut(s) 303, 433, 711, 816, 1227, 1335, 1492, 1565
SmiMI CAYNNNNRTG 1 cut(s) 927
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 7 cut(s) 219, 462, 640, 787, 1399, 1474, 1565
SsiI CCGC 7 cut(s) 183, 241, 505, 508, 587, 904, 1499
SspI AATATT 2 cut(s) 843, 1411
SspMI CTAG 4 cut(s) 705, 1268, 1298, 1451
StyD4I CCNGG 3 cut(s) 125, 200, 1570
StyI CCWWGG 1 cut(s) 1249
TaaI ACNGT 2 cut(s) 20, 1054
TaqI TCGA 3 cut(s) 213, 479, 1303
TasI AATT 7 cut(s) 219, 462, 640, 787, 1399, 1474, 1565
TatI WGTACW 2 cut(s) 45, 474
TauI GCSGC 3 cut(s) 186, 243, 508
TfiI GAWTC 3 cut(s) 63, 1087, 1312
Tru1I TTAA 5 cut(s) 633, 714, 819, 1338, 1559
Tru9I TTAA 5 cut(s) 633, 714, 819, 1338, 1559
TscAI CASTG 4 cut(s) 313, 361, 1108, 1324
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 4 cut(s) 887, 1430, 1578, 1592
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 5 cut(s) 398, 606, 1145, 1163, 1559
TspRI CASTG 4 cut(s) 313, 361, 1108, 1324
XapI RAATTY 2 cut(s) 219, 787
XceI RCATGY 4 cut(s) 372, 475, 926, 1284
XcmI CCANNNNNNNNNTGG 1 cut(s) 1578
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 4 cut(s) 705, 1268, 1298, 1451
Zsp2I ATGCAT 2 cut(s) 934, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.