Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Reverse (-)

24123913 .. 24126717

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGAAGCTCCCTTGCACGATTCGATCAATAACAAGCTCTCATTTTCGCAATAGCTTTAGAAATGTGAGCTCTGTGATCGATTCTGCACAAGAAGAATGTAGAATCGCTGAAGATAAGCAATTCGTCGATGCTGTCAAAAGAATCGTGCGAGGGAAACGGAGCTGGGAGATCGCATTGAGCAGTGAGCTAGTCTCGAGAAGATTGAAGACTGTTCATGTTGAAGAGATTCTGATTGGAACCATTGATGATCCCAAATTGGGTTTGAGGTTTTTCAATTTCCTCGGTTTGCATCGAGGATTCGACCATTCCACGGCGTCGTTTTGTATTTTGATCCATGCTCTGGTCAAAGCTAATCTCTTCTGGCCTGCTTCATCACTGTTGCAGACGCTTCTGCTTCGTGCGCTGAAGCCAAGTGACGTTTTTAATGTGCTTTTTAGTTGTTATGAAAAATGTAAGCTTAGTTCAAGCTCGAGTTTTGATTTGTTGATTCAGCATTATGTACGAAGTAGGAGAGTTCTAGATGGAGTTTTGGTGTTTAAGATGATGATAACGAAAGTTAGTTTACTGCCTGAAGTGAGAACTTTGAGTGCTCTTTTACATGGGTTGGTTAAGTTTAGGCATTTTGGTTTGGCAATGGAGTTGTTCAACGATATGGTCAGCGTGGGGATTCGTCCTGATGTTTACATTTACACAGGAGTTATACGTAGCTTGTGTGAGTTGAAAGATCTCTCTCGAGCTAAAGAAATGATTGCTCATATGGAGGCAACAGGATGTGATGTGAATATAGTTCCATATAATGTGTTGATAGATGGGCTTTGTAAGAAGCAGAAGGTTTGGGAGGCTGTTGGGATAAAGAAGGATTTAGCTGGAAAAGATCTGAAACCAGATGTTGTGACATATTGTACATTAGTCTACGGGTTATGTAAAGTGCAAGAATTTGAGATCGGATTGGAGATGATGGATGAGATGTTATGTTTGAGGTTCAGTCCTAGTGAAGCTGCGGTTTCAAGTTTGGTAGAGGGGTTAAGGAAGAGGGGAAAGATTGAAGAGGCGCTTAACTTGGTTAAAAGAGTAGTAGATTTTGGTGTCTCACCTAATTTATTTGTGTATAACGCATTGATTGACTCATTGTGCAAAGGTAGAAAGTTCCACGAAGCTGAGTTGCTTTTTGATAGGATGGGGAAAATTGGGTTGCGTCCTAATGATGTGACCTATTCAATTTTGATTGATATGTTTTGCAGAAGAGGGAAACTGGATACGGCACTTAGTTTCCTGGGGGAAATGGTTGATACGGGTTTGAAACTAAGTGTGTATCCATACAATTCTTTGATTAACGGGCACTGCAAGTTCGGTGACATTAGTGCAGCAGAGGGTTTCATGGCAGAGATGATTAATAAAAAGTTGGAGCCAACAGTGGTAACATACACATCATTAATGGGTGGATATTGCAGCAAAGGGAAAATAAACAAGGCCCTTAGGCTCTATCATGAGATGACAGGGAAGGGTATTGCGCCGAGTATCTATACATTCACCACGCTTTTATCGGGTCTATTCCGTGCTGGGTTGATTCGTGATGCAGTAAAGCTGTTTAACGAGATGGCAGAATGGAATGTTAAGCCAAACAGAGTGACTTATAATGTCATGATTGAAGGTTATTGCGAGGAAGGAGACATGTCTAAAGCCTTTGAGTTCCTGAAAGAAATGACCGAGAAAGGTATTGTGCCTGATACATACAGTTATAGACCGTTGATACACGGGCTATGTCTCACAGGTCAAGCTTCGGAAGCCAAAGTGTTCGTGGATGGCCTTCACAAGGGAAATTGTGAGCTGAATGAGATATGTTATACCGGACTCTTACACGGATTTTGCAGAGAAGGAAAATTAGAAGAGGCGTTAAGCGTTTGTCAGGAGATGGTACAAAGAGGGGTGGATTTGGACCTTGTGTGCTATGGTGTTCTTATAGATGGAAGTTTAAAGCACAAAGATCGAAAGTTGTTTTTTGGACTTTTAAAGGAGATGCATGATAGAGGACTAAAGCCTGATGATGTGATTTATACAAGTATGATTGATGCAAAGAGCAAAACCGGAGATTTCAAGGAAGCATTTGGAATATGGGATTTGATGATAAACGAAGGGTGTGTACCTAATGAAGTCACGTACACTGCTGTTATCAACGGATTATGCAAAGCCGGGTTTGTTAATGAAGCCGAGGTTCTTTGTTCAAAAATGCAGCCTGTCAGTTCGGTTCCTAACCAAGTAACGTATGGTTGTTTTCTCGACATTCTCACCAAAGGAGAAGTAGACATGCAGAAAGCTGTGGAGCTCCATAATGCAATCTTGAAAGGGCTTTTAGCAAACACCGCTACATATAATATGTTGATCCGCGGTTTTTGTAGACAAGGGAGAATAGAAGAAGCTTCTGAGCTCATCACAAGGATGATAGGCGATGGAGTTTCCCCTGATTGTATAACCTACACAACAATGATCAATGAGCTTTGTAGGAGAAACGATGTGAAGAAAGCGATTGAGTTATGGAACTCGATGACGGAAAAGGGTATAAGGCCAGATAGAGTAGCGTATAACACCCTAATACACGGTTGTTGTGTGGCGGGAGAAATGGGGAAGGCGACCGAGTTGAGGAATGAGATGTTGAGACAAGGCTTGATACCTAACAACAAAACCAGTAGAACAACTACTTCGAATGACACTAGTTCTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

907

Amino Acids

101.63

Weight (kDa)

8.16

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	190 - 238	7.9e-09	PPR repeat family
PPR_3	PF13812	214 - 270	1.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	225 - 274	6.6e-09	PPR repeat family
PPR_2	PF13041	261 - 309	6.5e-11	PPR repeat family
PPR_1	PF12854	291 - 323	1.6e-06	PPR repeat
PPR_2	PF13041	295 - 343	6e-06	PPR repeat family
PPR_long	PF17177	314 - 427	4.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	333 - 379	4.1e-06	PPR repeat family
PPR_3	PF13812	354 - 413	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	362 - 393	1e-08	PPR repeat
PPR_2	PF13041	365 - 414	5.6e-15	PPR repeat family
PPR	PF01535	369 - 397	2.9e-06	PPR repeat
PPR_1	PF12854	397 - 429	1.5e-11	PPR repeat
PPR	PF01535	403 - 432	3.7e-06	PPR repeat
PPR_long	PF17177	405 - 520	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	407 - 449	3.3e-09	PPR repeat family
PPR_3	PF13812	425 - 482	6.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	432 - 463	8e-06	PPR repeat
PPR_2	PF13041	437 - 483	8e-13	PPR repeat family
PPR_1	PF12854	467 - 499	3.4e-10	PPR repeat
PPR_2	PF13041	470 - 518	7.8e-18	PPR repeat family
PPR	PF01535	473 - 503	1.7e-08	PPR repeat
PPR_3	PF13812	493 - 552	4.6e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	501 - 533	5.3e-10	PPR repeat
PPR	PF01535	508 - 537	5.8e-06	PPR repeat
PPR_2	PF13041	509 - 553	3.5e-16	PPR repeat family
PPR_long	PF17177	523 - 626	1.5e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	526 - 588	1.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	537 - 569	2.5e-12	PPR repeat
PPR_2	PF13041	542 - 588	3.5e-17	PPR repeat family
PPR	PF01535	543 - 573	8.7e-10	PPR repeat
PPR_1	PF12854	607 - 639	7.4e-09	PPR repeat
PPR_2	PF13041	611 - 656	1.2e-10	PPR repeat family
PPR	PF01535	614 - 643	2.3e-07	PPR repeat
PPR_long	PF17177	624 - 760	4.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	646 - 691	1.2e-06	PPR repeat family
PPR_3	PF13812	669 - 725	8.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	680 - 729	6.2e-15	PPR repeat family
PPR	PF01535	683 - 713	4.8e-06	PPR repeat
PPR_1	PF12854	712 - 743	2.7e-12	PPR repeat
PPR_2	PF13041	718 - 762	4.7e-07	PPR repeat family
PPR_long	PF17177	776 - 876	1.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	781 - 813	1.9e-10	PPR repeat
PPR_2	PF13041	786 - 834	5.2e-16	PPR repeat family
TPR_24	PF23276	786 - 879	3.9e-06	Fungal tetratrico peptide repeats
PPR	PF01535	789 - 818	2.1e-07	PPR repeat
PPR_1	PF12854	816 - 849	1e-11	PPR repeat
PPR	PF01535	823 - 853	7.2e-07	PPR repeat
PPR_2	PF13041	823 - 868	1.5e-16	PPR repeat family
PPR_1	PF12854	851 - 883	8.9e-10	PPR repeat
PPR_2	PF13041	855 - 894	2.8e-10	PPR repeat family
PPR	PF01535	858 - 888	6.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1635
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccI	GTMKAC	3 cut(s)	912, 2301, 2395
AccII	CGCG	1 cut(s)	2385
AciI	CCGC	5 cut(s)	1001, 2361, 2383, 2385, 2609
AclWI	GGATC	3 cut(s)	242, 325, 2374
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	3 cut(s)	129, 425, 591
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	5 cut(s)	501, 904, 1917, 2142, 2159
AfiI	CCNNNNNNNGG	5 cut(s)	257, 310, 340, 1813, 2637
AflIII	ACRYGT	1 cut(s)	1671
AhlI	ACTAGT	1 cut(s)	2708
AjnI	CCWGG	1 cut(s)	1272
Alw21I	GWGCWC	4 cut(s)	71, 592, 2325, 2427
Alw26I	GTCTC	5 cut(s)	196, 1093, 1662, 1769, 2647
AlwI	GGATC	3 cut(s)	242, 325, 2374
Ama87I	CYCGRG	3 cut(s)	193, 469, 732
AoxI	GGCC	4 cut(s)	362, 1470, 1804, 2561
ApeKI	GCWGC	4 cut(s)	998, 1364, 1449, 2230
ApoI	RAATTY	1 cut(s)	935
AseI	ATTAAT	2 cut(s)	1392, 1433
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	3 cut(s)	403, 1054, 1513
AspS9I	GGNCC	2 cut(s)	1471, 1936
AsuC2I	CCSGG	1 cut(s)	2191
AsuHPI	GGTGA	4 cut(s)	1083, 1364, 1522, 2278
AsuII	TTCGAA	1 cut(s)	2699
AvaI	CYCGRG	3 cut(s)	193, 469, 732
AvaII	GGWCC	1 cut(s)	1936
AxyI	CCTNAGG	1 cut(s)	1475
BaeGI	GKGCMC	1 cut(s)	1341
BanII	GRGCYC	3 cut(s)	71, 2325, 2427
BarI	GAAGNNNNNNTAC	2 cut(s)	2124, 2156
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	4 cut(s)	71, 592, 2325, 2427
BbvI	GCAGC	4 cut(s)	985, 1376, 1461, 2242
BccI	CCATC	9 cut(s)	515, 803, 952, 1171, 1591, 1796, 1906, 1958, 2441
BceAI	ACGGC	2 cut(s)	327, 1275
BcgI	CGANNNNNNTGC	2 cut(s)	1967, 2001
BciT130I	CCWGG	1 cut(s)	1274
BciVI	GTATCC	2 cut(s)	1249, 1323
BclI	TGATCA	1 cut(s)	2484
BcnI	CCSGG	1 cut(s)	2191
BcoDI	GTCTC	5 cut(s)	196, 1093, 1662, 1769, 2647
BcuI	ACTAGT	1 cut(s)	2708
BfaI	CTAG	4 cut(s)	188, 518, 990, 2709
BfoI	RGCGCY	1 cut(s)	1055
BfuI	GTATCC	2 cut(s)	1249, 1323
BglII	AGATCT	2 cut(s)	724, 874
BisI	GCNGC	4 cut(s)	999, 1365, 1450, 2231
BlsI	GCNGC	4 cut(s)	1000, 1366, 1451, 2232
Bme1390I	CCNGG	2 cut(s)	1274, 2191
Bme18I	GGWCC	1 cut(s)	1936
BmeT110I	CYCGRG	3 cut(s)	193, 469, 732
BmgT120I	GGNCC	2 cut(s)	1471, 1936
BmiI	GGNNCC	3 cut(s)	238, 1407, 2247
BmrFI	CCNGG	2 cut(s)	1274, 2191
BmsI	GCATC	5 cut(s)	118, 298, 1564, 2007, 2059
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu14I	TTCGAA	1 cut(s)	2699
BpuMI	CCSGG	1 cut(s)	2191
Bsa29I	ATCGAT	1 cut(s)	78
BsaAI	YACGTR	2 cut(s)	704, 2157
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	5 cut(s)	280, 309, 1273, 2208, 2383
BsaWI	WCCGGW	2 cut(s)	1847, 2084
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	257, 310, 340, 1813, 2637
Bse1I	ACTGG	2 cut(s)	1257, 2682
Bse21I	CCTNAGG	1 cut(s)	1475
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	1274
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	5 cut(s)	280, 309, 1273, 2208, 2383
BseGI	GGATG	5 cut(s)	776, 967, 1182, 1807, 2442
BseLI	CCNNNNNNNGG	5 cut(s)	257, 310, 340, 1813, 2637
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	1149, 2412
BseNI	ACTGG	2 cut(s)	1257, 2682
BseSI	GKGCMC	1 cut(s)	1341
BseXI	GCAGC	4 cut(s)	985, 1376, 1461, 2242
BseYI	CCCAGC	2 cut(s)	162, 1559
BsgI	GTGCAG	2 cut(s)	69, 1383
Bsh1236I	CGCG	1 cut(s)	2385
Bsh1285I	CGRYCG	1 cut(s)	2631
BshFI	GGCC	4 cut(s)	364, 1472, 1806, 2563
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	2631
BsiHKAI	GWGCWC	4 cut(s)	71, 592, 2325, 2427
BsiHKCI	CYCGRG	3 cut(s)	193, 469, 732
BsiSI	CCGG	3 cut(s)	1848, 2085, 2190
BslI	CCNNNNNNNGG	5 cut(s)	257, 310, 340, 1813, 2637
BsmAI	GTCTC	5 cut(s)	196, 1093, 1662, 1769, 2647
BsnI	GGCC	4 cut(s)	364, 1472, 1806, 2563
BsoBI	CYCGRG	3 cut(s)	193, 469, 732
Bsp119I	TTCGAA	1 cut(s)	2699
Bsp1286I	GDGCHC	5 cut(s)	71, 592, 1341, 2325, 2427
Bsp1407I	TGTACA	1 cut(s)	902
BspACI	CCGC	5 cut(s)	1001, 2361, 2383, 2385, 2609
BspANI	GGCC	4 cut(s)	364, 1472, 1806, 2563
BspCNI	CTCAG	2 cut(s)	1150, 2413
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	2385
BspHI	TCATGA	2 cut(s)	1486, 1641
BspLI	GGNNCC	3 cut(s)	238, 1407, 2247
BspPI	GGATC	3 cut(s)	242, 325, 2374
BspT104I	TTCGAA	1 cut(s)	2699
BsrDI	GCAATG	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	902
BsrI	ACTGG	2 cut(s)	1257, 2682
BssECI	CCNNGG	5 cut(s)	280, 309, 1273, 2208, 2383
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	1274
Bst4CI	ACNGT	6 cut(s)	211, 378, 1414, 1736, 1746, 2597
Bst6I	CTCTTC	6 cut(s)	216, 362, 1025, 1041, 1237, 1881
BstACI	GRCGYC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	902
BstBAI	YACGTR	2 cut(s)	704, 2157
BstBI	TTCGAA	1 cut(s)	2699
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	6 cut(s)	458, 1158, 1265, 1304, 1475, 2421
BstDSI	CCRYGG	2 cut(s)	309, 2383
BstENI	CCTNNNNNAGG	1 cut(s)	1811
BstF5I	GGATG	5 cut(s)	776, 967, 1182, 1807, 2442
BstFNI	CGCG	1 cut(s)	2385
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	3 cut(s)	403, 1054, 1513
BstMAI	GTCTC	5 cut(s)	196, 1093, 1662, 1769, 2647
BstMCI	CGRYCG	1 cut(s)	2631
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 1784, 2360
BstNI	CCWGG	1 cut(s)	1274
BstNSI	RCATGY	2 cut(s)	1675, 2308
BstSCI	CCNGG	2 cut(s)	1272, 2189
BstSLI	GKGCMC	1 cut(s)	1341
BstSNI	TACGTA	1 cut(s)	704
BstUI	CGCG	1 cut(s)	2385
BstV1I	GCAGC	4 cut(s)	985, 1376, 1461, 2242
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	724, 874
BstYI	RGATCY	2 cut(s)	724, 874
Bsu15I	ATCGAT	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	1475
BsuI	GTATCC	2 cut(s)	1249, 1323
BsuRI	GGCC	4 cut(s)	364, 1472, 1806, 2563
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	2 cut(s)	309, 2383
BtgZI	GCGATG	1 cut(s)	2460
BtsCI	GGATG	5 cut(s)	776, 967, 1182, 1807, 2442
BtsI	GCAGTG	3 cut(s)	187, 1339, 2160
BtsIMutI	CAGTG	5 cut(s)	187, 374, 1339, 1419, 2160
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	2 cut(s)	1486, 1641
CfoI	GCGC	3 cut(s)	403, 1054, 1513
Cfr13I	GGNCC	2 cut(s)	1471, 1936
Cfr42I	CCGCGG	1 cut(s)	2386
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	3 cut(s)	303, 394, 1184
Csp6I	GTAC	5 cut(s)	500, 903, 1916, 2141, 2158
CviAII	CATG	9 cut(s)	215, 335, 599, 1378, 1487, 1642, 1672, 2021, 2305
CviQI	GTAC	5 cut(s)	500, 903, 1916, 2141, 2158
DdeI	CTNAG	6 cut(s)	458, 1158, 1265, 1304, 1475, 2421
DraI	TTTAAA	2 cut(s)	1974, 2010
Eam1104I	CTCTTC	6 cut(s)	216, 362, 1025, 1041, 1237, 1881
EarI	CTCTTC	6 cut(s)	216, 362, 1025, 1041, 1237, 1881
Ecl136II	GAGCTC	3 cut(s)	69, 2323, 2425
Eco105I	TACGTA	1 cut(s)	704
Eco24I	GRGCYC	3 cut(s)	71, 2325, 2427
Eco47I	GGWCC	1 cut(s)	1936
Eco53kI	GAGCTC	3 cut(s)	69, 2323, 2425
Eco57I	CTGAAG	3 cut(s)	129, 425, 591
Eco81I	CCTNAGG	1 cut(s)	1475
Eco88I	CYCGRG	3 cut(s)	193, 469, 732
EcoICRI	GAGCTC	3 cut(s)	69, 2323, 2425
EcoNI	CCTNNNNNAGG	1 cut(s)	1811
EcoO109I	RGGNCCY	1 cut(s)	1471
EcoRII	CCWGG	1 cut(s)	1272
EcoT22I	ATGCAT	1 cut(s)	2022
EcoT38I	GRGCYC	3 cut(s)	71, 2325, 2427
FaeI	CATG	9 cut(s)	218, 338, 602, 1381, 1490, 1645, 1675, 2024, 2308
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FatI	CATG	9 cut(s)	214, 334, 598, 1377, 1486, 1641, 1671, 2020, 2304
FauI	CCCGC	1 cut(s)	2602
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	2484
FblI	GTMKAC	3 cut(s)	912, 2301, 2395
Fnu4HI	GCNGC	4 cut(s)	999, 1365, 1450, 2231
FokI	GGATG	5 cut(s)	783, 974, 1189, 1814, 2449
FriOI	GRGCYC	3 cut(s)	71, 2325, 2427
Fsp4HI	GCNGC	4 cut(s)	999, 1365, 1450, 2231
FspBI	CTAG	4 cut(s)	188, 518, 990, 2709
GlaI	GCGC	3 cut(s)	402, 1053, 1512
GluI	GCNGC	4 cut(s)	999, 1365, 1450, 2231
GsaI	CCCAGC	2 cut(s)	166, 1563
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	4 cut(s)	364, 1472, 1806, 2563
HapII	CCGG	3 cut(s)	1848, 2085, 2190
HgaI	GACGC	3 cut(s)	303, 394, 1184
HhaI	GCGC	3 cut(s)	403, 1054, 1513
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	9 cut(s)	218, 338, 602, 1381, 1490, 1645, 1675, 2024, 2308
Hin6I	GCGC	3 cut(s)	401, 1052, 1511
HinP1I	GCGC	3 cut(s)	401, 1052, 1511
HindIII	AAGCTT	3 cut(s)	455, 1776, 2415
HpaII	CCGG	3 cut(s)	1848, 2085, 2190
HphI	GGTGA	4 cut(s)	1083, 1364, 1522, 2278
Hpy166II	GTNNAC	7 cut(s)	563, 682, 913, 2141, 2160, 2302, 2396
Hpy188I	TCNGA	5 cut(s)	231, 879, 947, 1783, 2422
Hpy8I	GTNNAC	7 cut(s)	563, 682, 913, 2141, 2160, 2302, 2396
Hpy99I	CGWCG	2 cut(s)	128, 319
HpyAV	CCTTC	9 cut(s)	823, 850, 1495, 1643, 1658, 1817, 1868, 2126, 2617
HpyCH4III	ACNGT	6 cut(s)	211, 378, 1414, 1736, 1746, 2597
HpyCH4IV	ACGT	4 cut(s)	417, 703, 2156, 2261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 1784, 2360
HpyF3I	CTNAG	6 cut(s)	458, 1158, 1265, 1304, 1475, 2421
HpySE526I	ACGT	4 cut(s)	417, 703, 2156, 2261
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	9 cut(s)	218, 338, 602, 1381, 1490, 1645, 1675, 2024, 2308
HspAI	GCGC	3 cut(s)	401, 1052, 1511
Ksp22I	TGATCA	1 cut(s)	2484
KspI	CCGCGG	1 cut(s)	2386
LmnI	GCTCC	5 cut(s)	12, 159, 1405, 2320, 2328
Lsp1109I	GCAGC	4 cut(s)	985, 1376, 1461, 2242
LweI	GCATC	5 cut(s)	118, 298, 1564, 2007, 2059
MaeI	CTAG	4 cut(s)	188, 518, 990, 2709
MaeII	ACGT	4 cut(s)	417, 703, 2156, 2261
MaeIII	GTNAC	8 cut(s)	413, 892, 1207, 1352, 1417, 1627, 2152, 2257
MflI	RGATCY	2 cut(s)	724, 874
MhlI	GDGCHC	5 cut(s)	71, 592, 1341, 2325, 2427
MlyI	GAGTC	2 cut(s)	1118, 1845
MmeI	TCCRAC	1 cut(s)	1383
Mph1103I	ATGCAT	1 cut(s)	2022
MroXI	GAANNNNTTC	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	2435, 2480
MspA1I	CMGCKG	1 cut(s)	2385
MspI	CCGG	3 cut(s)	1848, 2085, 2190
MspR9I	CCNGG	2 cut(s)	1274, 2191
MvaI	CCWGG	1 cut(s)	1274
MvnI	CGCG	1 cut(s)	2385
MwoI	GCNNNNNNNGC	3 cut(s)	400, 1784, 2360
NciI	CCSGG	1 cut(s)	2191
NdeI	CATATG	1 cut(s)	756
NlaIII	CATG	9 cut(s)	218, 338, 602, 1381, 1490, 1645, 1675, 2024, 2308
NlaIV	GGNNCC	3 cut(s)	238, 1407, 2247
NmeAIII	GCCGAG	2 cut(s)	1539, 2233
NmuCI	GTSAC	6 cut(s)	413, 892, 1207, 1352, 1627, 2152
NsiI	ATGCAT	1 cut(s)	2022
NspI	RCATGY	2 cut(s)	1675, 2308
NspV	TTCGAA	1 cut(s)	2699
PaeR7I	CTCGAG	3 cut(s)	193, 469, 732
PagI	TCATGA	2 cut(s)	1486, 1641
PciI	ACATGT	1 cut(s)	1671
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	9 cut(s)	19, 80, 102, 141, 226, 297, 487, 667, 1567
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	1000, 1366, 1451, 2232
PleI	GAGTC	2 cut(s)	1118, 1845
PpsI	GAGTC	2 cut(s)	1118, 1845
Ppu21I	YACGTR	2 cut(s)	704, 2157
PscI	ACATGT	1 cut(s)	1671
PshBI	ATTAAT	2 cut(s)	1392, 1433
PsiI	TTATAA	1 cut(s)	1635
Psp124BI	GAGCTC	3 cut(s)	71, 2325, 2427
Psp6I	CCWGG	1 cut(s)	1272
PspFI	CCCAGC	2 cut(s)	162, 1559
PspGI	CCWGG	1 cut(s)	1272
PspN4I	GGNNCC	3 cut(s)	238, 1407, 2247
PspPI	GGNCC	2 cut(s)	1471, 1936
PspXI	VCTCGAGB	1 cut(s)	469
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	2 cut(s)	724, 874
RsaI	GTAC	5 cut(s)	501, 904, 1917, 2142, 2159
RsaNI	GTAC	5 cut(s)	500, 903, 1916, 2141, 2158
RseI	CAYNNNNRTG	2 cut(s)	2435, 2480
SacI	GAGCTC	3 cut(s)	71, 2325, 2427
SacII	CCGCGG	1 cut(s)	2386
SatI	GCNGC	4 cut(s)	999, 1365, 1450, 2231
Sau96I	GGNCC	2 cut(s)	1471, 1936
SchI	GAGTC	2 cut(s)	1118, 1845
ScrFI	CCNGG	2 cut(s)	1274, 2191
SduI	GDGCHC	5 cut(s)	71, 592, 1341, 2325, 2427
SfaNI	GCATC	5 cut(s)	118, 298, 1564, 2007, 2059
Sfr274I	CTCGAG	3 cut(s)	193, 469, 732
Sfr303I	CCGCGG	1 cut(s)	2386
SfuI	TTCGAA	1 cut(s)	2699
SgrBI	CCGCGG	1 cut(s)	2386
SinI	GGWCC	1 cut(s)	1936
SlaI	CTCGAG	3 cut(s)	193, 469, 732
SmiMI	CAYNNNNRTG	2 cut(s)	2435, 2480
SmlI	CTYRAG	3 cut(s)	193, 469, 732
SmoI	CTYRAG	3 cut(s)	193, 469, 732
SnaBI	TACGTA	1 cut(s)	704
SpeI	ACTAGT	1 cut(s)	2708
SsiI	CCGC	5 cut(s)	1001, 2361, 2383, 2385, 2609
SspMI	CTAG	4 cut(s)	188, 518, 990, 2709
SstI	GAGCTC	3 cut(s)	71, 2325, 2427
StyD4I	CCNGG	2 cut(s)	1272, 2189
TaaI	ACNGT	6 cut(s)	211, 378, 1414, 1736, 1746, 2597
TaiI	ACGT	4 cut(s)	420, 706, 2159, 2264
TaqII	GACCGA	2 cut(s)	1721, 2645
TatI	WGTACW	1 cut(s)	902
TfiI	GAWTC	9 cut(s)	19, 80, 102, 141, 226, 297, 487, 667, 1567
TscAI	CASTG	5 cut(s)	187, 381, 1346, 1419, 2167
TseFI	GTSAC	6 cut(s)	413, 892, 1207, 1352, 1627, 2152
TseI	GCWGC	4 cut(s)	998, 1364, 1449, 2230
Tsp45I	GTSAC	6 cut(s)	413, 892, 1207, 1352, 1627, 2152
TspDTI	ATGAA	7 cut(s)	17, 203, 360, 459, 1366, 2163, 2217
TspGWI	ACGGA	5 cut(s)	172, 1544, 1875, 2190, 2561
TspRI	CASTG	5 cut(s)	187, 381, 1346, 1419, 2167
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	1936
VspI	ATTAAT	2 cut(s)	1392, 1433
XagI	CCTNNNNNAGG	1 cut(s)	1811
XapI	RAATTY	1 cut(s)	935
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	2 cut(s)	1675, 2308
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1795, 2261
XhoI	CTCGAG	3 cut(s)	193, 469, 732
XmiI	GTMKAC	3 cut(s)	912, 2301, 2395
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	4 cut(s)	188, 518, 990, 2709
Zsp2I	ATGCAT	1 cut(s)	2022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.