Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Forward (+)

7537074 .. 7539794

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGAAGCTCGCTCGTCCCCATCGTCCCCTCGCAAACCCTCTCATCCACTCCAAACCCAGAAACCTCTGTTCCTCCTCCTCCTCCAATCCCACCTCCCAAGATAATGACGAAAACGATGACGCCCGCTTTGTCTTCACCCTATCCGAGGTCGTTCGGGGGAAGCAGAGCTGGAAGCTCGCCTTCAACGACCCCTCCATTTCAGCTTCCCTGAAGCCCCGCCACGTTGAGAAGGTTCTGATCCAGAACGTACGGAATCCCAGGTTAGCTTTGCGCTTTTTCAATTTCTTGGGCTTGCACAGAAGCTTCGGTCACTCTACGGCGTCGTTTTGCATTCTGATTCACGCCCTGGTTCAGGGCAATCTCTTTTGGCCCGCCTCATCGCTTTTGCAGACCCTCTTGCTTCGTGGGTTGAGCCCAAGTGAGGTTTTTCAATCTCTGTTGAATTCTTATAGGAAACTTGAATGTTCGTCGAGTGTGGGATTTGATTTGTTGGTTCAAGGTTATGTGCAAAATAAGAGGGTTTTGGATGGTGTTTTGGTTGTGAGGCTGATGAGGGAGTGTGAAATGTTGCCGGAGGTGAGAACTTTGAATGCCCTTTTAAATGGGTTGGTGAAAATTAGGCATTTCAATTTGGTTCTGCAACTCTTTGATGAAATGATCAATGTGGGTCTTCGACCCGATGTTTATATGTATACTGCCGCGGTTAGGAGCTTGTGTGAATTGAAGGATTTAGATAAGGCTAAGGAAGTGATTCGGTACGCTGAATCGAATACGTGTGAGTTGAGTGTTGTTATGTATAATGTGTTGATTCATGGGCTCTGCAAGTGCCAGAGGGTTTGGGAGGCTGTAGAGGTTAAGAATATGTTGGGTCAGAAAGGGTTGAAAGCGGACATGGTCACATATTGTACTTTGGTGCTTGGGTTGTGTAAAGTGCAGGAATTTGAGGTTGGTGTGGAGTTAATGAATGAAATGATTGAGCTGGGGTTTGTTCCGAGTGAAGCAGTTCTTTCGGGTCTCATGGAGGGGTTGAGGAGGAAGGGGAAGATTGAAGATGCTTTTGATTTAGTGAAGAGAATGGGAGAAGTTGGGGTGGTTCCTAATTTGTTTGCGTACAATTCATTGCTCAATTCTTTGTGTAAAGGTGGGAAACTGGATGAGGCAGAATTGCTCTTCGATAACATGGGAAAGAAGGGTATGGTCCCTAATGATGTAACCTTTTCTATATTGATTGATTCCTTCTGCCGAAGGGGGATGTTGGATGTTGCATTTCGTTATTTTGATAAAATGATTAATGCTGGAGTTAGAGTAACTGTTTACCCCTACAATTCTTTGATAAGCGGGCAATGCAAGTTTGGAACATTGAGTGCAGCGGAATCTATCTTCTGCGAGATGATGAATAAAGGAGTGGCTCCAACCGTTGTAACCTATACGTCATTGATAAGTGGGTACTGCAAAGAAGGAGAGATGCACAAGGCATTTAGGCTGTATCATGAAATGATGGAAAAAGGCATTACGCCAAACACTTACACCTTTAGTGTAATTATTTCAGGTCTTTGTCGTGCAAATATGATGGCTGAAGCAACAAAATTATTTGATGAAATGGTGGAAGGGGGCATTTTGCCAAATGAGGTGACTTATAATCTTATGATTGATGGGCACTGCCGACAAGGTAACACAGTTAGAGCCTTTGAGTTGCTTGATGAAATGGTTGAGAAGGGTCTTGTACCAGACACGTATACATATAGACCTCTAATAAGTGGTCTGTGTTCGACGGGCAGAGTGTCTGAAGCCAAAAAGTTTGTAGATTTCCTTCACAAAGAGAATTACAAGTTAAATGAGATGTGCTATAGTGCACTGCTACATGGTTATTGCAAGGAAGGAAGATTACATGATGCATTAGGTGCTTGTCGTGAGATGATTGAAAGAGGGGTAGACATGGATCTTGTGTGCTATGCTGTACTAATTTGTGGAGCTTTAAAGCAACAGGATACCGGAAGATTATTTGGTCTCTTTAATGAGATGCATAATCAAGGATTGAGGCCTGATAATGTAATATATACAAGTATGATCGATGAATATGGGAAAGCAGGGAGATTTGACAAGGCAATTGGAGTTTGGGATATAATGGTTGGTGAAGGATGCTTACCTAATGTTGTGACTTACACTGCCTTGGTATATGGATTATGCAAGGCAGGTTATATGGATAAAGCAGAGCGTCTTTTGAAGGATATGCTCGTCAGTGATGCCTTTCCCAATCACGTCACATATGGTTGTTTCTTAAATCACCTTAGCAAAGAAGGAACCATGGAGAAAGCTTTACAACTGCACAATGCCATGCTTGCGGGGTTGTCAGCAAACACCATCACATACAATATACTTATCAGGGGTTTCTGCAAAATGGGTAAGTTTCAGGAAGCTTCACAGCTCCTGATCGAAATGACAGTCAATGGTATTTACCCAGATTGTATCACGTATTCAACATTTATCTATGAGTACTGTAGGAGGGGCAATTTGCTAGAAGCTATTAAGCTGTGGGATGTTATGCTAGATAGGGGTCTGAAGCCTGATATTCTAGCATATAACTTTTTGATATATGGGTGTTGTGTCACTGGAGAAATAACCAAGGCTTTCGAGTTGCGTGATGACATGATGAGAAGAGGGTTGAAGCCAAATCGAGTTACATATAACACACTTATCCGTGGAACTTGCCTGACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

907

Amino Acids

101.97

Weight (kDa)

7.62

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 239	2e-08	PPR repeat family
PPR_3	PF13812	215 - 271	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	259 - 285	3e-07	PPR repeat
PPR_2	PF13041	262 - 310	8.6e-11	PPR repeat family
PPR_long	PF17177	315 - 411	3.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	339 - 380	2.5e-08	PPR repeat family
PPR_3	PF13812	356 - 413	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 394	3.9e-10	PPR repeat
PPR_2	PF13041	366 - 415	1.8e-16	PPR repeat family
PPR	PF01535	370 - 398	5.1e-07	PPR repeat
PPR_1	PF12854	397 - 429	6.3e-12	PPR repeat
PPR	PF01535	404 - 434	1.3e-06	PPR repeat
PPR_long	PF17177	405 - 527	8e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	408 - 450	6.5e-08	PPR repeat family
PPR_3	PF13812	426 - 481	3.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	439 - 485	4.8e-14	PPR repeat family
PPR_3	PF13812	459 - 516	5.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	467 - 499	7.3e-14	PPR repeat
PPR_2	PF13041	471 - 520	5.5e-22	PPR repeat family
PPR	PF01535	474 - 504	5.8e-11	PPR repeat
PPR_1	PF12854	502 - 535	1.7e-12	PPR repeat
PPR	PF01535	509 - 539	1.1e-06	PPR repeat
PPR_2	PF13041	514 - 555	2.7e-14	PPR repeat family
PPR_long	PF17177	523 - 628	7e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	527 - 637	6.3e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	529 - 586	8.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	538 - 570	1.6e-12	PPR repeat
PPR_2	PF13041	541 - 589	8.5e-18	PPR repeat family
PPR	PF01535	544 - 574	4.7e-09	PPR repeat
PPR_1	PF12854	572 - 602	1.2e-08	PPR repeat
PPR_2	PF13041	584 - 625	4.9e-06	PPR repeat family
PPR_1	PF12854	608 - 639	2.1e-07	PPR repeat
PPR_2	PF13041	612 - 657	1.2e-08	PPR repeat family
PPR	PF01535	615 - 644	2.8e-06	PPR repeat
PPR_3	PF13812	670 - 725	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	678 - 710	6e-07	PPR repeat
PPR_2	PF13041	681 - 730	1.1e-14	PPR repeat family
PPR	PF01535	684 - 714	1.3e-06	PPR repeat
PPR_1	PF12854	713 - 744	5.8e-13	PPR repeat
PPR_2	PF13041	716 - 761	9.4e-11	PPR repeat family
PPR	PF01535	719 - 745	1.5e-06	PPR repeat
PPR_2	PF13041	751 - 799	6.7e-12	PPR repeat family
PPR_1	PF12854	782 - 814	4.6e-11	PPR repeat
PPR_2	PF13041	786 - 834	5.9e-15	PPR repeat family
PPR	PF01535	788 - 818	5.5e-08	PPR repeat
PPR_1	PF12854	816 - 848	2e-09	PPR repeat
PPR_2	PF13041	827 - 868	9.4e-10	PPR repeat family
PPR_3	PF13812	845 - 899	2.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	851 - 883	2.8e-06	PPR repeat
PPR_2	PF13041	855 - 903	1.2e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1638
Acc36I	ACCTGC	1 cut(s)	2183
AccI	GTMKAC	3 cut(s)	692, 1736, 1932
AccII	CGCG	1 cut(s)	701
AciI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
AclWI	GGATC	2 cut(s)	232, 1947
AcsI	RAATTY	2 cut(s)	442, 938
AcuI	CTGAAG	4 cut(s)	230, 1596, 1806, 2579
AcyI	GRCGYC	2 cut(s)	120, 320
AfaI	GTAC	8 cut(s)	249, 758, 907, 1112, 1448, 1725, 1959, 2495
AfiI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
AflIII	ACRYGT	2 cut(s)	773, 1731
AjiI	CACGTC	1 cut(s)	2260
AjnI	CCWGG	2 cut(s)	257, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	930, 962
Alw21I	GWGCWC	1 cut(s)	1855
Alw26I	GTCTC	2 cut(s)	1019, 2012
Alw44I	GTGCAC	1 cut(s)	1851
AlwI	GGATC	2 cut(s)	232, 1947
AlwNI	CAGNNNCTG	1 cut(s)	2428
AoxI	GGCC	2 cut(s)	368, 2039
ApaLI	GTGCAC	1 cut(s)	1851
ApeKI	GCWGC	1 cut(s)	1367
ApoI	RAATTY	2 cut(s)	442, 938
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 2427, 2459
AseI	ATTAAT	1 cut(s)	1290
Asp700I	GAANNNNTTC	2 cut(s)	750, 1002
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	369, 1198
AsuHPI	GGTGA	6 cut(s)	127, 589, 622, 1642, 2144, 2276
AvaII	GGWCC	1 cut(s)	1198
BaeGI	GKGCMC	2 cut(s)	1659, 1855
BanII	GRGCYC	2 cut(s)	416, 819
BarI	GAAGNNNNNNTAC	6 cut(s)	1794, 1826, 1869, 1901, 2127, 2159
BbsI	GAAGAC	2 cut(s)	124, 662
Bbv12I	GWGCWC	1 cut(s)	1855
BbvI	GCAGC	1 cut(s)	1379
BccI	CCATC	6 cut(s)	27, 521, 1492, 1564, 1646, 2369
BceAI	ACGGC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	990, 1024
BciT130I	CCWGG	2 cut(s)	259, 347
BciVI	GTATCC	1 cut(s)	1981
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	1019, 2012
BfaI	CTAG	3 cut(s)	2516, 2546, 2573
BfmI	CTRYAG	3 cut(s)	846, 1846, 2497
BfuAI	ACCTGC	1 cut(s)	2183
BfuI	GTATCC	1 cut(s)	1981
BisI	GCNGC	2 cut(s)	699, 1368
BlsI	GCNGC	2 cut(s)	700, 1369
BmcAI	AGTACT	1 cut(s)	2495
Bme1390I	CCNGG	2 cut(s)	259, 347
Bme18I	GGWCC	1 cut(s)	1198
BmgBI	CACGTC	1 cut(s)	2260
BmgT120I	GGNCC	2 cut(s)	369, 1198
BmiI	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
BmrFI	CCNGG	2 cut(s)	259, 347
BmsI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
BpiI	GAAGAC	2 cut(s)	124, 662
BpmI	CTGGAG	2 cut(s)	1317, 2631
Bpu10I	CCTNAGC	2 cut(s)	741, 2288
Bsa29I	ATCGAT	1 cut(s)	2070
BsaAI	YACGTR	3 cut(s)	774, 1734, 2472
BsaHI	GRCGYC	2 cut(s)	120, 320
BsaI	GGTCTC	2 cut(s)	1019, 2012
BsaJI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BsaWI	WCCGGW	1 cut(s)	1991
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 206, 700, 730, 1290, 1320
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
Bse1I	ACTGG	2 cut(s)	1155, 2614
Bse3DI	GCAATG	2 cut(s)	1118, 1349
BseBI	CCWGG	2 cut(s)	259, 347
BseCI	ATCGAT	1 cut(s)	2070
BseDI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BseGI	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BseLI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
BseMI	GCAATG	2 cut(s)	1118, 1349
BseNI	ACTGG	2 cut(s)	1155, 2614
BseRI	GAGGAG	4 cut(s)	64, 67, 70, 1045
BseSI	GKGCMC	2 cut(s)	1659, 1855
BseXI	GCAGC	1 cut(s)	1379
BseYI	CCCAGC	1 cut(s)	979
BsgI	GTGCAG	3 cut(s)	953, 1386, 2309
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	370, 2041
BshVI	ATCGAT	1 cut(s)	2070
BsiHKAI	GWGCWC	1 cut(s)	1855
BsiSI	CCGG	2 cut(s)	572, 1992
BsiWI	CGTACG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	9, 1184
BslI	CCNNNNNNNGG	4 cut(s)	145, 352, 421, 705
BsmAI	GTCTC	2 cut(s)	1019, 2012
BsmFI	GGGAC	2 cut(s)	9, 1184
BsmI	GAATGC	2 cut(s)	330, 595
BsnI	GGCC	2 cut(s)	370, 2041
Bso31I	GGTCTC	2 cut(s)	1019, 2012
Bsp1286I	GDGCHC	4 cut(s)	416, 819, 1659, 1855
Bsp143I	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
Bsp19I	CCATGG	1 cut(s)	2304
BspACI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
BspANI	GGCC	2 cut(s)	370, 2041
BspDI	ATCGAT	1 cut(s)	2070
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	1489
BspLI	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
BspMI	ACCTGC	1 cut(s)	2183
BspPI	GGATC	2 cut(s)	232, 1947
BspQI	GCTCTTC	1 cut(s)	1175
BspTNI	GGTCTC	2 cut(s)	1019, 2012
BsrDI	GCAATG	2 cut(s)	1118, 1349
BsrI	ACTGG	2 cut(s)	1155, 2614
BssECI	CCNNGG	8 cut(s)	144, 257, 345, 699, 2169, 2304, 2622, 2698
BssMI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
BssNAI	GTATAC	2 cut(s)	693, 1737
BssNI	GRCGYC	2 cut(s)	120, 320
BssT1I	CCWWGG	3 cut(s)	2169, 2304, 2622
Bst1107I	GTATAC	2 cut(s)	693, 1737
Bst2UI	CCWGG	2 cut(s)	259, 347
Bst4CI	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
Bst6I	CTCTTC	3 cut(s)	1064, 1175, 2650
BstACI	GRCGYC	2 cut(s)	120, 320
BstAPI	GCANNNNNTGC	1 cut(s)	1901
BstBAI	YACGTR	3 cut(s)	774, 1734, 2472
BstC8I	GCNNGC	7 cut(s)	9, 124, 177, 293, 372, 1340, 2340
BstDEI	CTNAG	2 cut(s)	741, 2288
BstDSI	CCRYGG	3 cut(s)	699, 2304, 2698
BstENI	CCTNNNNNAGG	2 cut(s)	143, 350
BstF5I	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	240, 660, 1942, 2070, 2433
BstMAI	GTCTC	2 cut(s)	1019, 2012
BstMBI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
BstMWI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
BstNI	CCWGG	2 cut(s)	259, 347
BstSCI	CCNGG	2 cut(s)	257, 345
BstSFI	CTRYAG	3 cut(s)	846, 1846, 2497
BstSLI	GKGCMC	2 cut(s)	1659, 1855
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	1379
BstV2I	GAAGAC	2 cut(s)	124, 662
BstX2I	RGATCY	1 cut(s)	1939
BstYI	RGATCY	1 cut(s)	1939
BstZ17I	GTATAC	2 cut(s)	693, 1737
Bsu15I	ATCGAT	1 cut(s)	2070
BsuI	GTATCC	1 cut(s)	1981
BsuRI	GGCC	2 cut(s)	370, 2041
BsuTUI	ATCGAT	1 cut(s)	2070
BtgI	CCRYGG	3 cut(s)	699, 2304, 2698
BtgZI	GCGATG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	2260
BtsCI	GGATG	7 cut(s)	42, 532, 1159, 1257, 1264, 2144, 2542
BtsI	GCAGTG	3 cut(s)	1657, 1853, 2163
BtsIMutI	CAGTG	5 cut(s)	1657, 1853, 2163, 2245, 2607
BveI	ACCTGC	1 cut(s)	2183
Cac8I	GCNNGC	7 cut(s)	9, 124, 177, 293, 372, 1340, 2340
CaiI	CAGNNNCTG	1 cut(s)	2428
CciI	TCATGA	1 cut(s)	1489
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	369, 1198
Cfr42I	CCGCGG	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	2070
CseI	GACGC	3 cut(s)	128, 309, 2204
Csp6I	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
CviQI	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
DdeI	CTNAG	2 cut(s)	741, 2288
DpnI	GATC	5 cut(s)	239, 659, 1941, 2069, 2432
DpnII	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
DraI	TTTAAA	2 cut(s)	600, 1977
Eam1104I	CTCTTC	3 cut(s)	1064, 1175, 2650
EarI	CTCTTC	3 cut(s)	1064, 1175, 2650
Eco130I	CCWWGG	3 cut(s)	2169, 2304, 2622
Eco147I	AGGCCT	1 cut(s)	2041
Eco24I	GRGCYC	2 cut(s)	416, 819
Eco31I	GGTCTC	2 cut(s)	1019, 2012
Eco47I	GGWCC	1 cut(s)	1198
Eco57I	CTGAAG	4 cut(s)	230, 1596, 1806, 2579
EcoNI	CCTNNNNNAGG	2 cut(s)	143, 350
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	257, 345
EcoT14I	CCWWGG	3 cut(s)	2169, 2304, 2622
EcoT22I	ATGCAT	2 cut(s)	1897, 2025
EcoT38I	GRGCYC	2 cut(s)	416, 819
ErhI	CCWWGG	3 cut(s)	2169, 2304, 2622
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 990, 1022
FaqI	GGGAC	2 cut(s)	9, 1184
FauI	CCCGC	5 cut(s)	131, 224, 379, 1331, 2335
FauNDI	CATATG	1 cut(s)	2266
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	3 cut(s)	692, 1736, 1932
Fnu4HI	GCNGC	2 cut(s)	699, 1368
FokI	GGATG	7 cut(s)	29, 539, 1166, 1264, 1271, 2151, 2549
FriOI	GRGCYC	2 cut(s)	416, 819
Fsp4HI	GCNGC	2 cut(s)	699, 1368
FspBI	CTAG	3 cut(s)	2516, 2546, 2573
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	699, 1368
GsaI	CCCAGC	1 cut(s)	983
GsuI	CTGGAG	2 cut(s)	1317, 2631
HaeIII	GGCC	2 cut(s)	370, 2041
HapII	CCGG	2 cut(s)	572, 1992
HgaI	GACGC	3 cut(s)	128, 309, 2204
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	120, 320
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	3 cut(s)	301, 2313, 2415
HinfI	GANTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
HpaII	CCGG	2 cut(s)	572, 1992
HphI	GGTGA	6 cut(s)	127, 589, 622, 1642, 2144, 2276
Hpy166II	GTNNAC	5 cut(s)	693, 1315, 1737, 1853, 1933
Hpy188I	TCNGA	7 cut(s)	145, 237, 336, 873, 993, 1786, 2559
Hpy188III	TCNNGA	5 cut(s)	241, 1490, 1910, 2411, 2428
Hpy8I	GTNNAC	5 cut(s)	693, 1315, 1737, 1853, 1933
Hpy99I	CGWCG	3 cut(s)	325, 472, 1774
HpyCH4III	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
HpyCH4IV	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
HpyF3I	CTNAG	2 cut(s)	741, 2288
HpySE526I	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
Hsp92I	GRCGYC	2 cut(s)	120, 320
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	657
KspI	CCGCGG	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
LguI	GCTCTTC	1 cut(s)	1175
LmnI	GCTCC	4 cut(s)	708, 1414, 1970, 2430
Lsp1109I	GCAGC	1 cut(s)	1379
LweI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
MaeI	CTAG	3 cut(s)	2516, 2546, 2573
MaeII	ACGT	7 cut(s)	222, 246, 773, 1430, 1733, 2259, 2471
MalI	GATC	5 cut(s)	239, 659, 1941, 2069, 2432
MboI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
MfeI	CAATTG	1 cut(s)	2106
MflI	RGATCY	1 cut(s)	1939
MhlI	GDGCHC	4 cut(s)	416, 819, 1659, 1855
MmeI	TCCRAC	2 cut(s)	1236, 1436
Mph1103I	ATGCAT	2 cut(s)	1897, 2025
MroXI	GAANNNNTTC	2 cut(s)	750, 1002
MseI	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
MspA1I	CMGCKG	2 cut(s)	701, 1370
MspI	CCGG	2 cut(s)	572, 1992
MspR9I	CCNGG	2 cut(s)	259, 347
MunI	CAATTG	1 cut(s)	2106
Mva1269I	GAATGC	2 cut(s)	330, 595
MvaI	CCWGG	2 cut(s)	259, 347
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	1344, 1901, 2339
NcoI	CCATGG	1 cut(s)	2304
NdeI	CATATG	1 cut(s)	2266
NdeII	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
NlaIV	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
NmuCI	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
NsiI	ATGCAT	2 cut(s)	1897, 2025
PagI	TCATGA	1 cut(s)	1489
PceI	AGGCCT	1 cut(s)	2041
PciSI	GCTCTTC	1 cut(s)	1175
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 183
PctI	GAATGC	2 cut(s)	330, 595
PdmI	GAANNNNTTC	2 cut(s)	750, 1002
PfeI	GAWTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
Pfl23II	CGTACG	1 cut(s)	247
PflFI	GACNNNGTC	1 cut(s)	893
PkrI	GCNGC	2 cut(s)	700, 1369
Ppu21I	YACGTR	3 cut(s)	774, 1734, 2472
PshBI	ATTAAT	1 cut(s)	1290
PsiI	TTATAA	1 cut(s)	1638
Psp6I	CCWGG	2 cut(s)	257, 345
PspFI	CCCAGC	1 cut(s)	979
PspGI	CCWGG	2 cut(s)	257, 345
PspLI	CGTACG	1 cut(s)	247
PspN4I	GGNNCC	4 cut(s)	1095, 1200, 1410, 2302
PspPI	GGNCC	2 cut(s)	369, 1198
PstNI	CAGNNNCTG	1 cut(s)	2428
PsuI	RGATCY	1 cut(s)	1939
PsyI	GACNNNGTC	1 cut(s)	893
RsaI	GTAC	8 cut(s)	249, 758, 907, 1112, 1448, 1725, 1959, 2495
RsaNI	GTAC	8 cut(s)	248, 757, 906, 1111, 1447, 1724, 1958, 2494
SacII	CCGCGG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	1175
SaqAI	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
SatI	GCNGC	2 cut(s)	699, 1368
Sau3AI	GATC	5 cut(s)	237, 657, 1939, 2067, 2430
Sau96I	GGNCC	2 cut(s)	369, 1198
ScaI	AGTACT	1 cut(s)	2495
ScrFI	CCNGG	2 cut(s)	259, 347
SduI	GDGCHC	4 cut(s)	416, 819, 1659, 1855
SfaNI	GCATC	6 cut(s)	1042, 1455, 1882, 2010, 2129, 2233
SfcI	CTRYAG	3 cut(s)	846, 1846, 2497
Sfr303I	CCGCGG	1 cut(s)	702
SgrBI	CCGCGG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	1198
SseBI	AGGCCT	1 cut(s)	2041
SsiI	CCGC	9 cut(s)	124, 217, 372, 699, 701, 887, 1338, 1370, 2342
SspMI	CTAG	3 cut(s)	2516, 2546, 2573
StuI	AGGCCT	1 cut(s)	2041
StyD4I	CCNGG	2 cut(s)	257, 345
StyI	CCWWGG	3 cut(s)	2169, 2304, 2622
TaaI	ACNGT	5 cut(s)	1312, 1417, 1678, 2443, 2498
TaiI	ACGT	7 cut(s)	225, 249, 776, 1433, 1736, 2262, 2474
TaqI	TCGA	9 cut(s)	470, 673, 767, 1173, 1769, 2070, 2433, 2631, 2674
TaqII	GACCGA	1 cut(s)	296
TatI	WGTACW	3 cut(s)	905, 1957, 2493
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	7 cut(s)	253, 337, 751, 764, 808, 1232, 1373
Tru1I	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
Tru9I	TTAA	9 cut(s)	599, 855, 959, 1290, 1832, 1976, 2013, 2279, 2526
TscAI	CASTG	5 cut(s)	1664, 1860, 2170, 2245, 2614
TseFI	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
TseI	GCWGC	1 cut(s)	1367
Tsp45I	GTSAC	6 cut(s)	308, 895, 1630, 2155, 2260, 2605
TspGWI	ACGGA	2 cut(s)	265, 2687
TspRI	CASTG	5 cut(s)	1664, 1860, 2170, 2245, 2614
Tth111I	GACNNNGTC	1 cut(s)	893
VneI	GTGCAC	1 cut(s)	1851
VpaK11BI	GGWCC	1 cut(s)	1198
VspI	ATTAAT	1 cut(s)	1290
XagI	CCTNNNNNAGG	2 cut(s)	143, 350
XapI	RAATTY	2 cut(s)	442, 938
XmiI	GTMKAC	3 cut(s)	692, 1736, 1932
XmnI	GAANNNNTTC	2 cut(s)	750, 1002
XspI	CTAG	3 cut(s)	2516, 2546, 2573
ZrmI	AGTACT	1 cut(s)	2495
Zsp2I	ATGCAT	2 cut(s)	1897, 2025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.