Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Reverse (-)

69619420 .. 69625102

Gene Structure 5683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG431800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGAAGCTCACTCGTCCGCATCGTCCCCTCCCAAACCCTCTCATTCACTCTAAACCCAGAAATCTCAGTACCTCTTCCAATTCCACCCCCAAAGATAATGACGAAAACGACGACCCCCACTTCATTTCCAACCTATCCGACGTCGTTCGAGGGAACCAGAGCTGGAGAATCGCCTTCAGCGACCCCTTCATTTCGAGCTCGTTAAAACCCCACCACGTCGAGAAGGTTCTGATCCAGAACGTAAGGAATCCCAGGTTAGCCTTGCGCTTCTTTAATTTTCTGGGCTTGCATAAATCCTTCAACCACTCAACGGCGTCGTTTTGCATTCTGATCCACGCCCTCGTTCAGTCTAGCCTCTTTTGGCCTGCCACCTCGCTTTTACAGACCCTCTTGCTTCGTGGGTTGAACCCAAATGAGGTTTTCCGGTCCCTTTTGAATTCATATAAGAAATTTAATTGCGCGACGAGTTTGGGTTTTGATTTGTTGGTGCAAAACTATGTGCAAAATAAGAGAGTGTTGGATGGTGTTGTGGTTGTGAGGCTGATGAGGGAGTGTAAAATGGTGCCCGAAGTTAGAACCTTGAATGCTCTTTTAAATGGGTTGGTGAGAATTAGGCATTTCAATATGGTTTTGCAGCTGTTTGATGAGTTGGTCAATGTTGGTCTTCGGCCGGATGCTTATATGTACACTGTGGTGGTTAGGAGTTTGTGTGAGTTGAAGGATTTGCACAAGGCTAATGAAGTGATTTGGTACGCGGAATCAAATGGGTGTGAGTTGAGTGTTGTTATGTATAATGTGTTGATTCATGGACTCTGCAGGAGCCAGAGAGTTTGGGAGGCGGTAGAAATCAAGAATTCATTGAGTCGAAAGGGATTGAAAGCAGATATGGTTACTTATTGTACATTGGTGCTTGGGTTGTGTAAAGTGCAAGAATTTGAGGCTGGTGTGGAGCTAATGAAGGAAATGATTCGGCTGGGGTTTGTTCCAAGTGCAGCGGCTCTTTCGGGTCTTATGGAGGGATTGAGGAGGAAGGGGAAGATTGGAGATGCTTTTGATTTAGTGAACAGAATGGGAGAAGTTGGGGTGGTGCCTAATTTGTTTGCTTATAATGCATTGATCAATTCTTTGTGTAAAGACGGGAAGCTGGATGAGGCAGAATTACTCTTTGACAACATGGGGACGAAGGGTTTGTTTCCCAATGATGTTACATATTCTATTTTGATTGATTCATTCTGTCGAAGGGGAATATTGGACACTGCACATTGTTATTTTAATAAAATGATCAATGCTAGGATTAGATTAACTGTATATCCCTACAATTCTTTGATAAGTGGGGAGTGCAAGTTTGGAAAGTTGAGTGTGGCGGAATCTCTCTTCAGTGAGATGATGAGTAGAAGTGTGGAACCAACTGTCGTTACTTATACGTCACTGATAAGTGGATACTGTAAAGGAGGAGAAATGCAGAAGGCATTCACACTGTATCATGAAATGATGGGAAGAGGCATTGCACCAAATACTTATACCTTCTCTGTAATTATTTCAGGTCTTTGTCGTGCAAGCATGATGGCTGAAGCAAGTAAATTCTTTGATGAAATGGTGGAAAGGGGCATTATGCCAAACGAGGTGACATACAATCTTTTGATTGATGGGTACTGTAGGGAAGGTAACATTACTAGAGCTTTTGAATTGCTTGATGAAATGCTCAAAAGGGGGCTTCTACCGGACACATATACATATAGACCCTTAATAAGTGGTCTTTGTTCCACAAGTGGAGTGTCTGAAGCCAAAAAGTTTGTAGATGACCTACACAAGAAGAATTATAAGTTAAATGAGATGTGCTACAGTGCACTGCTGTATGGTTATTGCAAGGAAGGAAGATTATATGATGCATTAGGTGCCTGTCGTGACATGAGTGAAAGAGGAGTAGACATGGATCTAGTGTGTTATGCCATACTTATCTGTGGAGCTCTGAAACAACAGGATACCCGAAGATTATTTGGTCTCGTAAATGAGATGCATAGTCATGGATTGAGGCCTGATAATGTAATCTATACAAGTATGATCGATGCATATGGGAAAACAGGAAAACTTGATAAGGCATTTGGACTTTGGGATATAATGGTTGATGAAGGATGCTCTCCTAATGTTGTAACATACACAGCCTTGATCTATGGATTATGTAAGGCAGGCTGTATTGATAAAGCCGAGCTTCTTTGCAAGGATATGCTCGTGGGTGATGCCCTTCCCAATCATGTCACATATGGTTGTTTCCTAGATCACTTCAGCAAAGAAGGTAGCATGGAGAAAGCTGTGCAACTACACAACACCATGCTTGCTGGGTTCTCAGCCAATACTGTAACATACAATATACTTATTAGGGGTTTCTGCAAAATGGGATGGGCAATTTGCCAGAAGCTGTTAGGTTGTGGGATGTTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

813

Amino Acids

91.32

Weight (kDa)

8.34

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	189 - 237	2.7e-08	PPR repeat family
PPR_3	PF13812	213 - 269	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 283	9.3e-08	PPR repeat
PPR_2	PF13041	260 - 308	2.2e-11	PPR repeat family
PPR_long	PF17177	312 - 428	6.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	361 - 392	1.1e-11	PPR repeat
PPR_2	PF13041	364 - 413	1.8e-17	PPR repeat family
PPR	PF01535	368 - 397	1.7e-07	PPR repeat
PPR_1	PF12854	395 - 427	8.1e-09	PPR repeat
PPR_3	PF13812	425 - 479	2.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	438 - 483	1e-14	PPR repeat family
PPR	PF01535	439 - 466	4.9e-06	PPR repeat
PPR_3	PF13812	457 - 514	1.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	466 - 497	2.2e-11	PPR repeat
PPR_2	PF13041	469 - 518	8.4e-20	PPR repeat family
PPR	PF01535	472 - 502	1.2e-09	PPR repeat
PPR_long	PF17177	490 - 626	6.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	500 - 533	6.6e-11	PPR repeat
PPR	PF01535	507 - 537	9.2e-07	PPR repeat
PPR_2	PF13041	512 - 553	2e-14	PPR repeat family
TPR_24	PF23276	525 - 633	8.5e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	529 - 584	9.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	535 - 567	8.8e-15	PPR repeat
PPR_2	PF13041	539 - 587	2.3e-19	PPR repeat family
PPR	PF01535	542 - 572	6.2e-10	PPR repeat
PPR_2	PF13041	610 - 655	2.6e-07	PPR repeat family
PPR_3	PF13812	668 - 723	6.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	676 - 708	1.3e-07	PPR repeat
PPR_2	PF13041	679 - 728	6.3e-18	PPR repeat family
PPR	PF01535	682 - 712	2.3e-08	PPR repeat
PPR_1	PF12854	711 - 742	3.9e-11	PPR repeat
PPR_2	PF13041	714 - 758	4e-09	PPR repeat family
PPR_2	PF13041	749 - 797	1.6e-12	PPR repeat family
PPR_1	PF12854	780 - 799	3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1107, 1821
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	3 cut(s)	562, 1087, 1895
AccI	GTMKAC	1 cut(s)	1926
AccII	CGCG	2 cut(s)	461, 755
AciI	CCGC	5 cut(s)	17, 755, 839, 995, 1364
AclWI	GGATC	3 cut(s)	226, 325, 1941
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	5 cut(s)	436, 449, 853, 932, 1580
AcuI	CTGAAG	5 cut(s)	160, 1360, 1590, 1800, 2266
AcyI	GRCGYC	2 cut(s)	141, 314
AfaI	GTAC	5 cut(s)	70, 686, 752, 901, 1652
AfiI	CCNNNNNNNGG	2 cut(s)	310, 415
AgsI	TTSAA	8 cut(s)	301, 406, 436, 583, 622, 718, 877, 1685
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	692
Alw21I	GWGCWC	3 cut(s)	200, 1849, 1969
Alw26I	GTCTC	1 cut(s)	2006
Alw44I	GTGCAC	1 cut(s)	1845
AlwI	GGATC	3 cut(s)	226, 325, 1941
AlwNI	CAGNNNCTG	1 cut(s)	2416
AoxI	GGCC	3 cut(s)	362, 668, 2033
ApaLI	GTGCAC	1 cut(s)	1845
ApeKI	GCWGC	2 cut(s)	634, 992
ApoI	RAATTY	5 cut(s)	436, 449, 853, 932, 1580
ArsI	GACNNNNNNTTYG	2 cut(s)	1171, 1203
Asp700I	GAANNNNTTC	2 cut(s)	966, 1469
AspLEI	GCGC	2 cut(s)	267, 461
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	616, 1636, 2246
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	2 cut(s)	567, 1849
BanI	GGYRCC	3 cut(s)	562, 1087, 1895
BanII	GRGCYC	2 cut(s)	200, 1969
BauI	CACGAG	1 cut(s)	2228
BbsI	GAAGAC	1 cut(s)	656
Bbv12I	GWGCWC	3 cut(s)	200, 1849, 1969
BbvI	GCAGC	2 cut(s)	646, 1004
BccI	CCATC	5 cut(s)	515, 1486, 1558, 1640, 2391
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	2 cut(s)	1433, 1975
BclI	TGATCA	2 cut(s)	1116, 1281
BcoDI	GTCTC	1 cut(s)	2006
BfaI	CTAG	6 cut(s)	351, 1290, 1674, 1937, 2273, 2440
BfmI	CTRYAG	3 cut(s)	814, 1654, 1840
BfuI	GTATCC	2 cut(s)	1433, 1975
BisI	GCNGC	3 cut(s)	635, 993, 996
BlsI	GCNGC	3 cut(s)	636, 994, 997
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	7 cut(s)	155, 428, 564, 821, 1089, 1404, 1897
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	8 cut(s)	28, 664, 1036, 1876, 2004, 2056, 2123, 2227
BpiI	GAAGAC	1 cut(s)	656
BpmI	CTGGAG	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	2064
BsaHI	GRCGYC	2 cut(s)	141, 314
BsaI	GGTCTC	1 cut(s)	2006
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	2 cut(s)	423, 1720
BsaXI	ACNNNNNCTCC	4 cut(s)	694, 724, 1328, 1358
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 415
Bse3DI	GCAATG	1 cut(s)	1503
BseBI	CCWGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	2064
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	6 cut(s)	526, 679, 1153, 2138, 2402, 2436
BseLI	CCNNNNNNNGG	2 cut(s)	310, 415
BseMI	GCAATG	1 cut(s)	1503
BseMII	CTCAG	2 cut(s)	79, 2358
BseRI	GAGGAG	3 cut(s)	1039, 1467, 1935
BseSI	GKGCMC	2 cut(s)	567, 1849
BseX3I	CGGCCG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	646, 1004
BseYI	CCCAGC	2 cut(s)	973, 2336
BsgI	GTGCAG	2 cut(s)	1011, 1242
Bsh1236I	CGCG	2 cut(s)	461, 755
Bsh1285I	CGRYCG	1 cut(s)	671
BshFI	GGCC	3 cut(s)	364, 670, 2035
BshNI	GGYRCC	3 cut(s)	562, 1087, 1895
BshVI	ATCGAT	1 cut(s)	2064
BsiEI	CGRYCG	1 cut(s)	671
BsiHKAI	GWGCWC	3 cut(s)	200, 1849, 1969
BsiSI	CCGG	3 cut(s)	424, 671, 1721
BslFI	GGGAC	3 cut(s)	9, 412, 1192
BslI	CCNNNNNNNGG	2 cut(s)	310, 415
BsmAI	GTCTC	1 cut(s)	2006
BsmFI	GGGAC	3 cut(s)	9, 412, 1192
BsmI	GAATGC	3 cut(s)	324, 589, 1469
BsnI	GGCC	3 cut(s)	364, 670, 2035
Bso31I	GGTCTC	1 cut(s)	2006
Bsp1286I	GDGCHC	4 cut(s)	200, 567, 1849, 1969
Bsp1407I	TGTACA	2 cut(s)	684, 899
Bsp143I	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
BspACI	CCGC	5 cut(s)	17, 755, 839, 995, 1364
BspANI	GGCC	3 cut(s)	364, 670, 2035
BspCNI	CTCAG	2 cut(s)	78, 2357
BspDI	ATCGAT	1 cut(s)	2064
BspFNI	CGCG	2 cut(s)	461, 755
BspHI	TCATGA	1 cut(s)	1483
BspLI	GGNNCC	7 cut(s)	155, 428, 564, 821, 1089, 1404, 1897
BspMAI	CTGCAG	1 cut(s)	818
BspPI	GGATC	3 cut(s)	226, 325, 1941
BspT107I	GGYRCC	3 cut(s)	562, 1087, 1895
BspTNI	GGTCTC	1 cut(s)	2006
BsrDI	GCAATG	1 cut(s)	1503
BsrGI	TGTACA	2 cut(s)	684, 899
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
BssNI	GRCGYC	2 cut(s)	141, 314
BssSI	CACGAG	1 cut(s)	2228
Bst2BI	CACGAG	1 cut(s)	2228
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	8 cut(s)	691, 1306, 1411, 1445, 1479, 1655, 1844, 2356
Bst6I	CTCTTC	3 cut(s)	79, 1379, 1492
BstACI	GRCGYC	2 cut(s)	141, 314
BstAPI	GCANNNNNTGC	1 cut(s)	1895
BstAUI	TGTACA	2 cut(s)	684, 899
BstC8I	GCNNGC	5 cut(s)	287, 366, 1558, 2188, 2334
BstDEI	CTNAG	2 cut(s)	65, 2344
BstF5I	GGATG	6 cut(s)	526, 679, 1153, 2138, 2402, 2436
BstFNI	CGCG	2 cut(s)	461, 755
BstHHI	GCGC	2 cut(s)	267, 461
BstKTI	GATC	8 cut(s)	234, 333, 1119, 1284, 1936, 2064, 2169, 2278
BstMAI	GTCTC	1 cut(s)	2006
BstMBI	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
BstMCI	CGRYCG	1 cut(s)	671
BstMWI	GCNNNNNNNGC	2 cut(s)	1109, 1895
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	3 cut(s)	814, 1654, 1840
BstSLI	GKGCMC	2 cut(s)	567, 1849
BstUI	CGCG	2 cut(s)	461, 755
BstV1I	GCAGC	2 cut(s)	646, 1004
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	1 cut(s)	1933
BstYI	RGATCY	1 cut(s)	1933
BstZI	CGGCCG	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	2064
BsuI	GTATCC	2 cut(s)	1433, 1975
BsuRI	GGCC	3 cut(s)	364, 670, 2035
BsuTUI	ATCGAT	1 cut(s)	2064
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	6 cut(s)	526, 679, 1153, 2138, 2402, 2436
BtsI	GCAGTG	2 cut(s)	1254, 1847
BtsIMutI	CAGTG	7 cut(s)	687, 1254, 1384, 1427, 1475, 1847, 1849
Cac8I	GCNNGC	5 cut(s)	287, 366, 1558, 2188, 2334
CaiI	CAGNNNCTG	1 cut(s)	2416
CciI	TCATGA	1 cut(s)	1483
CfoI	GCGC	2 cut(s)	267, 461
Cfr13I	GGNCC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	2064
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	5 cut(s)	69, 685, 751, 900, 1651
CviQI	GTAC	5 cut(s)	69, 685, 751, 900, 1651
DdeI	CTNAG	2 cut(s)	65, 2344
DpnI	GATC	8 cut(s)	233, 332, 1118, 1283, 1935, 2063, 2168, 2277
DpnII	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
DraI	TTTAAA	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	668
EagI	CGGCCG	1 cut(s)	668
Eam1104I	CTCTTC	3 cut(s)	79, 1379, 1492
EarI	CTCTTC	3 cut(s)	79, 1379, 1492
EciI	GGCGGA	1 cut(s)	1379
Ecl136II	GAGCTC	2 cut(s)	198, 1967
EclXI	CGGCCG	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	2035
Eco24I	GRGCYC	2 cut(s)	200, 1969
Eco31I	GGTCTC	1 cut(s)	2006
Eco47I	GGWCC	1 cut(s)	426
Eco52I	CGGCCG	1 cut(s)	668
Eco53kI	GAGCTC	2 cut(s)	198, 1967
Eco57I	CTGAAG	5 cut(s)	160, 1360, 1590, 1800, 2266
EcoICRI	GAGCTC	2 cut(s)	198, 1967
EcoRI	GAATTC	2 cut(s)	436, 853
EcoRII	CCWGG	1 cut(s)	251
EcoT22I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
EcoT38I	GRGCYC	2 cut(s)	200, 1969
FalI	AAGNNNNNCTT	2 cut(s)	2193, 2225
FaqI	GGGAC	3 cut(s)	9, 412, 1192
FauNDI	CATATG	2 cut(s)	2071, 2260
FbaI	TGATCA	2 cut(s)	1116, 1281
FblI	GTMKAC	1 cut(s)	1926
Fnu4HI	GCNGC	3 cut(s)	635, 993, 996
FokI	GGATG	5 cut(s)	533, 686, 1160, 2145, 2409
FriOI	GRGCYC	2 cut(s)	200, 1969
Fsp4HI	GCNGC	3 cut(s)	635, 993, 996
FspBI	CTAG	6 cut(s)	351, 1290, 1674, 1937, 2273, 2440
GlaI	GCGC	2 cut(s)	266, 460
GluI	GCNGC	3 cut(s)	635, 993, 996
GsaI	CCCAGC	2 cut(s)	977, 2340
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	364, 670, 2035
HapII	CCGG	3 cut(s)	424, 671, 1721
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	2 cut(s)	267, 461
Hin1I	GRCGYC	2 cut(s)	141, 314
Hin6I	GCGC	2 cut(s)	265, 459
HinP1I	GCGC	2 cut(s)	265, 459
HinfI	GANTC	9 cut(s)	168, 247, 758, 802, 810, 862, 967, 1226, 1367
HpaII	CCGG	3 cut(s)	424, 671, 1721
HphI	GGTGA	3 cut(s)	616, 1636, 2246
Hpy166II	GTNNAC	4 cut(s)	687, 1063, 1847, 1927
Hpy188I	TCNGA	5 cut(s)	139, 231, 330, 1780, 1971
Hpy188III	TCNNGA	5 cut(s)	220, 235, 850, 1484, 1904
Hpy8I	GTNNAC	4 cut(s)	687, 1063, 1847, 1927
Hpy99I	CGWCG	6 cut(s)	113, 143, 146, 221, 319, 466
HpyCH4III	ACNGT	8 cut(s)	691, 1306, 1411, 1445, 1479, 1655, 1844, 2356
HpyCH4IV	ACGT	4 cut(s)	141, 216, 240, 1424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1109, 1895
HpyF3I	CTNAG	2 cut(s)	65, 2344
HpySE526I	ACGT	4 cut(s)	141, 216, 240, 1424
Hsp92I	GRCGYC	2 cut(s)	141, 314
HspAI	GCGC	2 cut(s)	265, 459
Ksp22I	TGATCA	2 cut(s)	1116, 1281
Kzo9I	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
LmnI	GCTCC	3 cut(s)	819, 949, 1964
Lsp1109I	GCAGC	2 cut(s)	646, 1004
LweI	GCATC	8 cut(s)	28, 664, 1036, 1876, 2004, 2056, 2123, 2227
MaeI	CTAG	6 cut(s)	351, 1290, 1674, 1937, 2273, 2440
MaeII	ACGT	4 cut(s)	141, 216, 240, 1424
MalI	GATC	8 cut(s)	233, 332, 1118, 1283, 1935, 2063, 2168, 2277
MboI	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
MboII	GAAGA	8 cut(s)	66, 656, 1048, 1366, 1509, 1825, 1887, 2001
MflI	RGATCY	1 cut(s)	1933
MhlI	GDGCHC	4 cut(s)	200, 567, 1849, 1969
MlyI	GAGTC	2 cut(s)	804, 871
MmeI	TCCRAC	3 cut(s)	153, 162, 498
Mph1103I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
MroXI	GAANNNNTTC	2 cut(s)	966, 1469
MseI	TTAA	8 cut(s)	203, 273, 453, 593, 1272, 1301, 1745, 1826
MslI	CAYNNNNRTG	2 cut(s)	692, 2022
MspA1I	CMGCKG	2 cut(s)	637, 995
MspI	CCGG	3 cut(s)	424, 671, 1721
MspR9I	CCNGG	1 cut(s)	253
Mva1269I	GAATGC	3 cut(s)	324, 589, 1469
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	2 cut(s)	461, 755
MwoI	GCNNNNNNNGC	2 cut(s)	1109, 1895
NdeI	CATATG	2 cut(s)	2071, 2260
NdeII	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
NlaIV	GGNNCC	7 cut(s)	155, 428, 564, 821, 1089, 1404, 1897
NmeAIII	GCCGAG	1 cut(s)	2230
NmuCI	GTSAC	4 cut(s)	1425, 1624, 1904, 2254
NsiI	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
OliI	CACNNNNGTG	1 cut(s)	692
PagI	TCATGA	1 cut(s)	1483
PceI	AGGCCT	1 cut(s)	2035
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 108, 177
PctI	GAATGC	3 cut(s)	324, 589, 1469
PdmI	GAANNNNTTC	2 cut(s)	966, 1469
PfeI	GAWTC	7 cut(s)	168, 247, 758, 802, 967, 1226, 1367
PkrI	GCNGC	3 cut(s)	636, 994, 997
PleI	GAGTC	2 cut(s)	804, 870
PpsI	GAGTC	2 cut(s)	804, 870
PsiI	TTATAA	2 cut(s)	1107, 1821
Psp124BI	GAGCTC	2 cut(s)	200, 1969
Psp6I	CCWGG	1 cut(s)	251
PspFI	CCCAGC	2 cut(s)	973, 2336
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	7 cut(s)	155, 428, 564, 821, 1089, 1404, 1897
PspPI	GGNCC	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	818
PstNI	CAGNNNCTG	1 cut(s)	2416
PsuI	RGATCY	1 cut(s)	1933
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	5 cut(s)	70, 686, 752, 901, 1652
RsaNI	GTAC	5 cut(s)	69, 685, 751, 900, 1651
RseI	CAYNNNNRTG	2 cut(s)	692, 2022
SacI	GAGCTC	2 cut(s)	200, 1969
SaqAI	TTAA	8 cut(s)	203, 273, 453, 593, 1272, 1301, 1745, 1826
SatI	GCNGC	3 cut(s)	635, 993, 996
Sau3AI	GATC	8 cut(s)	231, 330, 1116, 1281, 1933, 2061, 2166, 2275
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	804, 871
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	4 cut(s)	200, 567, 1849, 1969
SfaNI	GCATC	8 cut(s)	28, 664, 1036, 1876, 2004, 2056, 2123, 2227
SfcI	CTRYAG	3 cut(s)	814, 1654, 1840
SinI	GGWCC	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	692, 2022
SseBI	AGGCCT	1 cut(s)	2035
SsiI	CCGC	5 cut(s)	17, 755, 839, 995, 1364
SspI	AATATT	1 cut(s)	1248
SspMI	CTAG	6 cut(s)	351, 1290, 1674, 1937, 2273, 2440
SstI	GAGCTC	2 cut(s)	200, 1969
StuI	AGGCCT	1 cut(s)	2035
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	8 cut(s)	691, 1306, 1411, 1445, 1479, 1655, 1844, 2356
TaiI	ACGT	4 cut(s)	144, 219, 243, 1427
TaqI	TCGA	6 cut(s)	148, 194, 219, 865, 1237, 2064
TatI	WGTACW	2 cut(s)	684, 899
TauI	GCSGC	1 cut(s)	998
TfiI	GAWTC	7 cut(s)	168, 247, 758, 802, 967, 1226, 1367
Tru1I	TTAA	8 cut(s)	203, 273, 453, 593, 1272, 1301, 1745, 1826
Tru9I	TTAA	8 cut(s)	203, 273, 453, 593, 1272, 1301, 1745, 1826
TscAI	CASTG	7 cut(s)	694, 1261, 1384, 1434, 1482, 1849, 1854
TseFI	GTSAC	4 cut(s)	1425, 1624, 1904, 2254
TseI	GCWGC	2 cut(s)	634, 992
Tsp45I	GTSAC	4 cut(s)	1425, 1624, 1904, 2254
TspRI	CASTG	7 cut(s)	694, 1261, 1384, 1434, 1482, 1849, 1854
VneI	GTGCAC	1 cut(s)	1845
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	5 cut(s)	436, 449, 853, 932, 1580
XmiI	GTMKAC	1 cut(s)	1926
XmnI	GAANNNNTTC	2 cut(s)	966, 1469
XspI	CTAG	6 cut(s)	351, 1290, 1674, 1937, 2273, 2440
ZraI	GACGTC	1 cut(s)	142
Zsp2I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.