Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Reverse (-)

30452125 .. 30454839

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGAAGCTCACTCGTCCTCGTCGTTCACTCCCAAACCCTCTCCTTCACTCCATACCCAGGAACCTCAGCACCTCTTCCAATCCAACCCCCAAAGACAATGACGAAAACGACGACGCCCACTTCATTTCCAACCTCTCCGACGTCGTTCGAGGGAAGCAGAGCTGGAGAATCGCCCTCAGCGACCCCTTCATCTCAGCCTCGCTAAAACCCCACCACGTCGAGAAGGTTCTGATCCAGAACGTGAGTAATCCCAGGTTAGCCTTGCGTTTCTTTAATTTTCTGGGCTTGCATAAATCCTTCAACCACTCTACGGCGTCGTTTTGCATTCTGATTCACTCGCTGGTTCAGTCTAGCCTCTTCTGGCCTGCTACTTCGCTTTTGCAGACGCTATTGCTTCGTGGGTCGAACCCAGATGAGGTTTTCCGGTGGCTTTTGAGTTCGTATAAGAAATTTGAATGTGGGTCGAGTTTGGGTTTTGATTTGCTGGTGCAGAACTATGTGCAAAATAAGAGAGTGTTGGATGGTGTTGTGGTTGTGAGGTTGATGAGGGAGTGTAAATTGGTGCCTGAAGTTAGAACCTTGAATGCTGTTTTAAATGGGTTGGTGAGAATCAGGCATTTCAATGTGGTTTTGCAGCTGTTTGATGAGTTTGTCAATGTTGGTCTTCGGCCGGATGGTTATATGTACACTGTGGTGGTTAAGAGTTTGTGTGAATTGAAGGATTTGCATAAGGCTAAGGAAGTGATTTGGTACGCGGAGTCAAATGGGTGTGAGTTGAGTGTTGTTACGTATAATGTGTTGATTCATGGGCTCTGCAAGAGCCAGAGGGTTTGGGAGGCGGTGGAAATCAAGAATATGTTGAGTCGGAAGGGACTGAAAGCAGATGTGGTTACTTATTGTACATTGGTGCTTGGGTTGTGTAGAGTGCAAGAATTTGAGGTTGGTGTGGAGCTAATGAAGGAAATGATTCAGCTGGGGTTTGTTCCAAGTGAAGCGGCTCTTTCGGGGCTTATGGAGGGATTGAGGAGGAAGGGGAAGATTGGAGATGCTTTTGATTTAGTGAACAGAATGGGAGAAGTTGGGGTGGTGCCTAATTTGTTTGCTTACAATGCATTGATCAATTCTTTATGTAAAGACGGGAAGCTGGATGAGGCGGAGTTGCTCTTTGACAACATGGGGAAGAAGGATTTGTTTCCCAATGATGTAACATATTCTATTCTGATTGATTCGTTCTGTCGGAGGGGAATTTTGGACACTGCACATTGTTATTTTAATAAATTGATCAATGCTGGGATCAGATTAACTGTGTATCCCTACAATTCTTTGATAAGTGGGGAATGCAAGTTTGGAAAGTTGACTGTGGCGGAATCTCTCTTCAGTCAGATGATGAGTAGAAGTGTGGAACCAACTGTTGTAACTTACACATCACTGATAAGTGGATACTGCAAAGGAGGAGAACTGCAGAAGGCATTTACACTATATCATGAAATGATGGGAAGAGGCATTGCACCAAACACTTATACCTTCTCTGCAATTATTTCAGGTCTTTGTCATGCAAGCATGATGCCGGAAGCAAGTAAATTCTTTGATGAAATGGTGGAAAGAGGCATTATGCCAAACGAGGTGACATACAATCTTTTGATTGATGGGTACTGTCGGGAAGGTAACATTACTAGAGCTTTTGAATTGCTTGATGAAATGCTCAAAAGTGGTCTTTTACCGGACACATATACATATAGACCTTTAATAAGTGGCCTTTGTTCCACGAGTGGAGTGTCTGAAGCGAAAAAGTTTGTAGATGATCTTCACAAGAAGAATTTTAAGTTAAATGAGATGTGCTACAGCGCACTACTGTATGGTTATTGCAAGGAAGGAAGATTATATGATGCATTAGGTGCCTGTTGTGACATGAGTGAAAGAGGAGTAGACATGGATCTAGTGTGTTATTCCATACTTATCTGTGGAGCTCTTAAACAACAGGATACCCAAAGATTATTTGGTATCGTAAACGAGATGCATAATCAAGGATTGAGGCCTGATATTGTAATCTATACAAGTATGATTGATGCATACGGGAAAACAGGAAAACTTGATAAGGCAGTTGGACTTTGGGATATAATGGTTGGTGAAGGATGCTCCCCTAATGTTGTAACATACACGGCCTTGATATTTGGATTATGTAAGGCAGGCTGTATTGATAAAGCCGAGCTTCTTTGCAAGGATATGCTCGTGGGTGATGCCCTTCCCAATCACGTCACATATGGTTGTTTCTTAGATCACTTCAGCAAAGAAGGTAGCATGGAGAAAGCTGTGCAACTTCACAATTCCATGCTTGCTGGGTTCTCAGCCAATACTGTCACATACAATATACTTATTAGGGGTTTCTGCAAAATGGGCAACTTTCATGAAGCTTCAGAGCTCCTGGTTGAGATGACAAACCATGGTATTTACCCCGATTGCATCACCTATTCAACATTTATCTTTGAGTATTGCAGGACGGGCAATTTGCTAGAAGCTATTAGGTTGTGGGATGTTATGCTGGATAGGGGTCTGAAGCCTGATATTGTAGCATATAACTTTTTGATATATGGTTGCTGTGTCACCGGGGAACTGACCAAGGCTTTTGAGTTGCGTGATGACATGATCAGTAGAGGGTTGAAACCAAATCAAGTTACATTAAACACACTAAGTCGTGGAACTTCCCTTACTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

905

Amino Acids

101.37

Weight (kDa)

6.84

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	189 - 237	3.7e-06	PPR repeat family
PPR_3	PF13812	213 - 269	4.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 283	5.5e-09	PPR repeat
PPR_2	PF13041	260 - 308	1.5e-12	PPR repeat family
PPR_long	PF17177	313 - 429	8.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	337 - 377	3e-07	PPR repeat family
PPR_3	PF13812	354 - 411	3.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	361 - 392	1.2e-11	PPR repeat
PPR_2	PF13041	364 - 413	1.9e-17	PPR repeat family
PPR	PF01535	368 - 396	3e-07	PPR repeat
PPR_1	PF12854	395 - 420	3.4e-07	PPR repeat
PPR_3	PF13812	426 - 479	2.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	438 - 483	3.9e-14	PPR repeat family
PPR_3	PF13812	457 - 514	2.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	466 - 497	1.5e-11	PPR repeat
PPR_2	PF13041	469 - 518	8.3e-19	PPR repeat family
PPR	PF01535	472 - 502	2.1e-09	PPR repeat
PPR_long	PF17177	493 - 626	8.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	500 - 533	1.1e-08	PPR repeat
PPR	PF01535	507 - 537	1.4e-06	PPR repeat
PPR_2	PF13041	511 - 553	8.6e-14	PPR repeat family
TPR_24	PF23276	528 - 605	6.2e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	529 - 584	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	535 - 567	9.9e-15	PPR repeat
PPR_2	PF13041	539 - 587	9.2e-19	PPR repeat family
PPR	PF01535	542 - 572	1.1e-09	PPR repeat
TPR_24	PF23276	600 - 704	4.6e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	610 - 655	3.4e-08	PPR repeat family
PPR_3	PF13812	668 - 723	1.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	676 - 708	1.9e-07	PPR repeat
PPR_2	PF13041	679 - 728	4e-17	PPR repeat family
PPR	PF01535	682 - 712	5.3e-08	PPR repeat
PPR_1	PF12854	711 - 742	2.6e-11	PPR repeat
PPR_2	PF13041	715 - 759	3.6e-08	PPR repeat family
PPR_long	PF17177	779 - 896	5.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	779 - 827	4.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	780 - 812	4.8e-12	PPR repeat
PPR_2	PF13041	784 - 832	3.9e-15	PPR repeat family
PPR	PF01535	786 - 816	1.5e-08	PPR repeat
PPR_1	PF12854	815 - 846	1e-08	PPR repeat
PPR_2	PF13041	826 - 866	9.2e-10	PPR repeat family
PPR_3	PF13812	843 - 896	1.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	849 - 881	1.2e-07	PPR repeat
PPR_2	PF13041	853 - 899	1.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	3 cut(s)	562, 1087, 1895
AccI	GTMKAC	1 cut(s)	1926
AccII	CGCG	1 cut(s)	755
AciI	CCGC	5 cut(s)	755, 839, 995, 1154, 1364
AclWI	GGATC	3 cut(s)	226, 1301, 1941
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	5 cut(s)	449, 932, 1245, 1580, 1816
AcuI	CTGAAG	6 cut(s)	588, 1360, 1800, 2266, 2397, 2573
AcyI	GRCGYC	3 cut(s)	114, 141, 314
AfaI	GTAC	4 cut(s)	686, 752, 901, 1652
AfiI	CCNNNNNNNGG	4 cut(s)	57, 310, 415, 2709
AgsI	TTSAA	8 cut(s)	301, 455, 583, 622, 718, 1685, 2472, 2659
AjiI	CACGTC	2 cut(s)	217, 2254
AjnI	CCWGG	3 cut(s)	56, 251, 2421
AjuI	GAANNNNNNNTTGG	4 cut(s)	924, 956, 1329, 1361
AleI	CACNNNNGTG	1 cut(s)	692
Alw21I	GWGCWC	2 cut(s)	1969, 2421
AlwI	GGATC	3 cut(s)	226, 1301, 1941
AoxI	GGCC	5 cut(s)	362, 668, 1753, 2033, 2160
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	5 cut(s)	449, 932, 1245, 1580, 1816
ArsI	GACNNNNNNTTYG	2 cut(s)	2488, 2520
Asp700I	GAANNNNTTC	1 cut(s)	966
AspLEI	GCGC	1 cut(s)	1847
AsuC2I	CCSGG	1 cut(s)	2605
AsuHPI	GGTGA	6 cut(s)	616, 1636, 2138, 2246, 2455, 2593
BanI	GGYRCC	3 cut(s)	562, 1087, 1895
BanII	GRGCYC	3 cut(s)	813, 1969, 2421
BarI	GAAGNNNNNNTAC	2 cut(s)	1788, 1820
BauI	CACGAG	2 cut(s)	1765, 2228
BbsI	GAAGAC	1 cut(s)	656
Bbv12I	GWGCWC	2 cut(s)	1969, 2421
BbvCI	CCTCAGC	2 cut(s)	65, 176
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	4 cut(s)	515, 668, 1486, 1640
BceAI	ACGGC	2 cut(s)	327, 2175
BciT130I	CCWGG	3 cut(s)	58, 253, 2423
BciVI	GTATCC	3 cut(s)	1320, 1433, 1975
BclI	TGATCA	3 cut(s)	1116, 1281, 2643
BcnI	CCSGG	1 cut(s)	2605
BfaI	CTAG	5 cut(s)	351, 1674, 1937, 2510, 2709
BfmI	CTRYAG	2 cut(s)	1460, 1840
BfuI	GTATCC	3 cut(s)	1320, 1433, 1975
BisI	GCNGC	2 cut(s)	635, 996
BlsI	GCNGC	2 cut(s)	636, 997
Bme1390I	CCNGG	4 cut(s)	58, 253, 2423, 2605
BmgBI	CACGTC	2 cut(s)	217, 2254
BmiI	GGNNCC	5 cut(s)	62, 564, 1089, 1404, 1897
BmrFI	CCNGG	4 cut(s)	58, 253, 2423, 2605
BmsI	GCATC	8 cut(s)	1036, 1554, 1876, 2004, 2056, 2123, 2227, 2469
BpiI	GAAGAC	1 cut(s)	656
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	3 cut(s)	65, 176, 735
BpuMI	CCSGG	1 cut(s)	2605
BsaAI	YACGTR	1 cut(s)	789
BsaHI	GRCGYC	3 cut(s)	114, 141, 314
BsaJI	CCNNGG	5 cut(s)	56, 251, 2440, 2604, 2616
BsaWI	WCCGGW	2 cut(s)	423, 1720
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 310, 415, 2709
Bse3DI	GCAATG	1 cut(s)	1503
BseBI	CCWGG	3 cut(s)	58, 253, 2423
BseDI	CCNNGG	5 cut(s)	56, 251, 2440, 2604, 2616
BseGI	GGATG	5 cut(s)	526, 679, 1153, 2138, 2536
BseLI	CCNNNNNNNGG	4 cut(s)	57, 310, 415, 2709
BseMI	GCAATG	1 cut(s)	1503
BseMII	CTCAG	4 cut(s)	79, 190, 207, 2358
BseRI	GAGGAG	3 cut(s)	1039, 1467, 1935
BseX3I	CGGCCG	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	646
BseYI	CCCAGC	3 cut(s)	973, 1289, 2336
BsgI	GTGCAG	2 cut(s)	509, 1242
Bsh1236I	CGCG	1 cut(s)	755
Bsh1285I	CGRYCG	1 cut(s)	671
BshFI	GGCC	5 cut(s)	364, 670, 1755, 2035, 2162
BshNI	GGYRCC	3 cut(s)	562, 1087, 1895
BsiEI	CGRYCG	1 cut(s)	671
BsiHKAI	GWGCWC	2 cut(s)	1969, 2421
BsiSI	CCGG	5 cut(s)	424, 671, 1568, 1721, 2604
BslFI	GGGAC	1 cut(s)	885
BslI	CCNNNNNNNGG	4 cut(s)	57, 310, 415, 2709
BsmFI	GGGAC	1 cut(s)	885
BsmI	GAATGC	3 cut(s)	324, 589, 1343
BsnI	GGCC	5 cut(s)	364, 670, 1755, 2035, 2162
Bsp1286I	GDGCHC	3 cut(s)	813, 1969, 2421
Bsp1407I	TGTACA	2 cut(s)	684, 899
Bsp143I	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
Bsp19I	CCATGG	1 cut(s)	2440
BspACI	CCGC	5 cut(s)	755, 839, 995, 1154, 1364
BspANI	GGCC	5 cut(s)	364, 670, 1755, 2035, 2162
BspCNI	CTCAG	4 cut(s)	78, 189, 206, 2357
BspFNI	CGCG	1 cut(s)	755
BspHI	TCATGA	2 cut(s)	1483, 2404
BspLI	GGNNCC	5 cut(s)	62, 564, 1089, 1404, 1897
BspMAI	CTGCAG	1 cut(s)	1464
BspPI	GGATC	3 cut(s)	226, 1301, 1941
BspT107I	GGYRCC	3 cut(s)	562, 1087, 1895
BsrDI	GCAATG	1 cut(s)	1503
BsrGI	TGTACA	2 cut(s)	684, 899
BssECI	CCNNGG	5 cut(s)	56, 251, 2440, 2604, 2616
BssMI	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
BssNI	GRCGYC	3 cut(s)	114, 141, 314
BssSI	CACGAG	2 cut(s)	1765, 2228
BssT1I	CCWWGG	2 cut(s)	2440, 2616
Bst2BI	CACGAG	2 cut(s)	1765, 2228
Bst2UI	CCWGG	3 cut(s)	58, 253, 2423
Bst4CI	ACNGT	7 cut(s)	691, 1306, 1360, 1411, 1655, 1854, 2356
Bst6I	CTCTTC	4 cut(s)	79, 362, 1379, 1492
BstACI	GRCGYC	3 cut(s)	114, 141, 314
BstAPI	GCANNNNNTGC	1 cut(s)	1895
BstAUI	TGTACA	2 cut(s)	684, 899
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	5 cut(s)	287, 366, 1558, 2188, 2334
BstDEI	CTNAG	7 cut(s)	65, 176, 193, 735, 2272, 2344, 2687
BstDSI	CCRYGG	1 cut(s)	2440
BstF5I	GGATG	5 cut(s)	526, 679, 1153, 2138, 2536
BstFNI	CGCG	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	1847
BstKTI	GATC	8 cut(s)	234, 1119, 1284, 1296, 1804, 1936, 2278, 2646
BstMBI	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
BstMCI	CGRYCG	1 cut(s)	671
BstMWI	GCNNNNNNNGC	4 cut(s)	1109, 1895, 2394, 2499
BstNI	CCWGG	3 cut(s)	58, 253, 2423
BstSCI	CCNGG	4 cut(s)	56, 251, 2421, 2603
BstSFI	CTRYAG	2 cut(s)	1460, 1840
BstSNI	TACGTA	1 cut(s)	789
BstUI	CGCG	1 cut(s)	755
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	1 cut(s)	1933
BstYI	RGATCY	1 cut(s)	1933
BstZI	CGGCCG	1 cut(s)	668
BsuI	GTATCC	3 cut(s)	1320, 1433, 1975
BsuRI	GGCC	5 cut(s)	364, 670, 1755, 2035, 2162
BtgI	CCRYGG	1 cut(s)	2440
BtrI	CACGTC	2 cut(s)	217, 2254
BtsCI	GGATG	5 cut(s)	526, 679, 1153, 2138, 2536
BtsI	GCAGTG	1 cut(s)	1254
BtsIMutI	CAGTG	3 cut(s)	687, 1254, 1427
Cac8I	GCNNGC	5 cut(s)	287, 366, 1558, 2188, 2334
CciI	TCATGA	2 cut(s)	1483, 2404
CfoI	GCGC	1 cut(s)	1847
CseI	GACGC	3 cut(s)	122, 303, 394
Csp6I	GTAC	4 cut(s)	685, 751, 900, 1651
CviQI	GTAC	4 cut(s)	685, 751, 900, 1651
DdeI	CTNAG	7 cut(s)	65, 176, 193, 735, 2272, 2344, 2687
DpnI	GATC	8 cut(s)	233, 1118, 1283, 1295, 1803, 1935, 2277, 2645
DpnII	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
DraI	TTTAAA	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	668
EagI	CGGCCG	1 cut(s)	668
Eam1104I	CTCTTC	4 cut(s)	79, 362, 1379, 1492
EarI	CTCTTC	4 cut(s)	79, 362, 1379, 1492
EciI	GGCGGA	2 cut(s)	1169, 1379
Ecl136II	GAGCTC	2 cut(s)	1967, 2419
EclXI	CGGCCG	1 cut(s)	668
Eco105I	TACGTA	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	2440, 2616
Eco147I	AGGCCT	1 cut(s)	2035
Eco24I	GRGCYC	3 cut(s)	813, 1969, 2421
Eco52I	CGGCCG	1 cut(s)	668
Eco53kI	GAGCTC	2 cut(s)	1967, 2419
Eco57I	CTGAAG	6 cut(s)	588, 1360, 1800, 2266, 2397, 2573
EcoICRI	GAGCTC	2 cut(s)	1967, 2419
EcoRII	CCWGG	3 cut(s)	56, 251, 2421
EcoT14I	CCWWGG	2 cut(s)	2440, 2616
EcoT22I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
EcoT38I	GRGCYC	3 cut(s)	813, 1969, 2421
ErhI	CCWWGG	2 cut(s)	2440, 2616
FalI	AAGNNNNNCTT	4 cut(s)	984, 1016, 2193, 2225
FaqI	GGGAC	1 cut(s)	885
FauNDI	CATATG	1 cut(s)	2260
FbaI	TGATCA	3 cut(s)	1116, 1281, 2643
FblI	GTMKAC	1 cut(s)	1926
Fnu4HI	GCNGC	2 cut(s)	635, 996
FokI	GGATG	5 cut(s)	533, 686, 1160, 2145, 2543
FriOI	GRGCYC	3 cut(s)	813, 1969, 2421
Fsp4HI	GCNGC	2 cut(s)	635, 996
FspBI	CTAG	5 cut(s)	351, 1674, 1937, 2510, 2709
GlaI	GCGC	1 cut(s)	1846
GluI	GCNGC	2 cut(s)	635, 996
GsaI	CCCAGC	3 cut(s)	977, 1293, 2340
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	5 cut(s)	364, 670, 1755, 2035, 2162
HapII	CCGG	5 cut(s)	424, 671, 1568, 1721, 2604
HgaI	GACGC	3 cut(s)	122, 303, 394
HhaI	GCGC	1 cut(s)	1847
Hin1I	GRCGYC	3 cut(s)	114, 141, 314
Hin6I	GCGC	1 cut(s)	1845
HinP1I	GCGC	1 cut(s)	1845
HincII	GTYRAC	1 cut(s)	1356
HindII	GTYRAC	1 cut(s)	1356
HindIII	AAGCTT	1 cut(s)	2409
HinfI	GANTC	9 cut(s)	168, 331, 609, 758, 802, 862, 967, 1226, 1367
HpaII	CCGG	5 cut(s)	424, 671, 1568, 1721, 2604
HphI	GGTGA	6 cut(s)	616, 1636, 2138, 2246, 2455, 2593
Hpy166II	GTNNAC	6 cut(s)	26, 687, 1063, 1356, 1927, 2008
Hpy188III	TCNNGA	6 cut(s)	220, 235, 850, 1484, 1658, 2405
Hpy8I	GTNNAC	6 cut(s)	26, 687, 1063, 1356, 1927, 2008
Hpy99I	CGWCG	7 cut(s)	24, 113, 116, 143, 146, 221, 319
HpyCH4III	ACNGT	7 cut(s)	691, 1306, 1360, 1411, 1655, 1854, 2356
HpyCH4IV	ACGT	5 cut(s)	141, 216, 240, 788, 2253
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1109, 1895, 2394, 2499
HpyF3I	CTNAG	7 cut(s)	65, 176, 193, 735, 2272, 2344, 2687
HpySE526I	ACGT	5 cut(s)	141, 216, 240, 788, 2253
Hsp92I	GRCGYC	3 cut(s)	114, 141, 314
HspAI	GCGC	1 cut(s)	1845
Ksp22I	TGATCA	3 cut(s)	1116, 1281, 2643
Kzo9I	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
LmnI	GCTCC	4 cut(s)	949, 1964, 2141, 2424
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	8 cut(s)	1036, 1554, 1876, 2004, 2056, 2123, 2227, 2469
MaeI	CTAG	5 cut(s)	351, 1674, 1937, 2510, 2709
MaeII	ACGT	5 cut(s)	141, 216, 240, 788, 2253
MalI	GATC	8 cut(s)	233, 1118, 1283, 1295, 1803, 1935, 2277, 2645
MboI	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
MflI	RGATCY	1 cut(s)	1933
MhlI	GDGCHC	3 cut(s)	813, 1969, 2421
MlyI	GAGTC	2 cut(s)	767, 871
MmeI	TCCRAC	7 cut(s)	107, 153, 162, 498, 845, 1217, 2083
Mph1103I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
MroXI	GAANNNNTTC	1 cut(s)	966
MslI	CAYNNNNRTG	2 cut(s)	621, 692
MspA1I	CMGCKG	2 cut(s)	637, 973
MspI	CCGG	5 cut(s)	424, 671, 1568, 1721, 2604
MspR9I	CCNGG	4 cut(s)	58, 253, 2423, 2605
Mva1269I	GAATGC	3 cut(s)	324, 589, 1343
MvaI	CCWGG	3 cut(s)	58, 253, 2423
MvnI	CGCG	1 cut(s)	755
MwoI	GCNNNNNNNGC	4 cut(s)	1109, 1895, 2394, 2499
NciI	CCSGG	1 cut(s)	2605
NcoI	CCATGG	1 cut(s)	2440
NdeI	CATATG	1 cut(s)	2260
NdeII	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
NlaIV	GGNNCC	5 cut(s)	62, 564, 1089, 1404, 1897
NmeAIII	GCCGAG	1 cut(s)	2230
NmuCI	GTSAC	5 cut(s)	1624, 1904, 2254, 2356, 2599
NsiI	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071
OliI	CACNNNNGTG	1 cut(s)	692
PagI	TCATGA	2 cut(s)	1483, 2404
PceI	AGGCCT	1 cut(s)	2035
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 108, 177
PctI	GAATGC	3 cut(s)	324, 589, 1343
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	7 cut(s)	168, 331, 609, 802, 967, 1226, 1367
PkrI	GCNGC	2 cut(s)	636, 997
PleI	GAGTC	2 cut(s)	766, 870
PpsI	GAGTC	2 cut(s)	766, 870
Ppu21I	YACGTR	1 cut(s)	789
Psp124BI	GAGCTC	2 cut(s)	1969, 2421
Psp6I	CCWGG	3 cut(s)	56, 251, 2421
PspFI	CCCAGC	3 cut(s)	973, 1289, 2336
PspGI	CCWGG	3 cut(s)	56, 251, 2421
PspN4I	GGNNCC	5 cut(s)	62, 564, 1089, 1404, 1897
PsrI	GAACNNNNNNTAC	1 cut(s)	2689
PstI	CTGCAG	1 cut(s)	1464
PsuI	RGATCY	1 cut(s)	1933
PvuII	CAGCTG	2 cut(s)	637, 973
RsaI	GTAC	4 cut(s)	686, 752, 901, 1652
RsaNI	GTAC	4 cut(s)	685, 751, 900, 1651
RseI	CAYNNNNRTG	2 cut(s)	621, 692
SacI	GAGCTC	2 cut(s)	1969, 2421
SatI	GCNGC	2 cut(s)	635, 996
Sau3AI	GATC	8 cut(s)	231, 1116, 1281, 1293, 1801, 1933, 2275, 2643
SchI	GAGTC	2 cut(s)	767, 871
ScrFI	CCNGG	4 cut(s)	58, 253, 2423, 2605
SduI	GDGCHC	3 cut(s)	813, 1969, 2421
SfaNI	GCATC	8 cut(s)	1036, 1554, 1876, 2004, 2056, 2123, 2227, 2469
SfcI	CTRYAG	2 cut(s)	1460, 1840
SmiMI	CAYNNNNRTG	2 cut(s)	621, 692
SnaBI	TACGTA	1 cut(s)	789
SseBI	AGGCCT	1 cut(s)	2035
SsiI	CCGC	5 cut(s)	755, 839, 995, 1154, 1364
SspMI	CTAG	5 cut(s)	351, 1674, 1937, 2510, 2709
SstI	GAGCTC	2 cut(s)	1969, 2421
StuI	AGGCCT	1 cut(s)	2035
StyD4I	CCNGG	4 cut(s)	56, 251, 2421, 2603
StyI	CCWWGG	2 cut(s)	2440, 2616
TaaI	ACNGT	7 cut(s)	691, 1306, 1360, 1411, 1655, 1854, 2356
TaiI	ACGT	5 cut(s)	144, 219, 243, 791, 2256
TaqI	TCGA	4 cut(s)	148, 219, 404, 464
TatI	WGTACW	2 cut(s)	684, 899
TauI	GCSGC	1 cut(s)	998
TfiI	GAWTC	7 cut(s)	168, 331, 609, 802, 967, 1226, 1367
TscAI	CASTG	3 cut(s)	694, 1261, 1434
TseFI	GTSAC	5 cut(s)	1624, 1904, 2254, 2356, 2599
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	5 cut(s)	1624, 1904, 2254, 2356, 2599
TspRI	CASTG	3 cut(s)	694, 1261, 1434
XapI	RAATTY	5 cut(s)	449, 932, 1245, 1580, 1816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1994
XmiI	GTMKAC	1 cut(s)	1926
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	5 cut(s)	351, 1674, 1937, 2510, 2709
ZraI	GACGTC	1 cut(s)	142
Zsp2I	ATGCAT	4 cut(s)	1114, 1891, 2019, 2071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.