Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016031

Physical Location & Seq

Genomic Coordinates Forward (+)

13390052 .. 13392778

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1144200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGAAGCTCGCTCGTCCCCATCGTCCCCTCGCAAACCCTCTCATCCACTCCAAACCCAGAAACCTCTGTTCCTCCTTCTCCTCCTCCTCCAATCCCACCTCCCAAGATAATGACGAAAACGACGACGCCCGCTTCGTCTTCACCCTATCCGAGGTCGTTCGGGGGAAGCAGAGCTGGAAGCTCGCCTTCAACGACCCCTTCATTTCAGCTACCTTGGAGCCCCGCCACGTTGAGAAGGTTCTGATCCAGAACGTACGGAATCCCAGGTTAGCCTTGCGCTTTTTCAATTTCTTGGGCTTGCACAGAAGCTTCAGCCACTCTACGGCGTCGTTTTGCATTCTGATTCACGCCCTGGTTCAGGGCAATCTCTTTTGGCCCGCCTCGTCGCTTTTGCAGACCCTCTTGCTTCGTGGGTTGAACCCAAGTGAGGTTTTTCAATCTCTGTTGAATTCTTATAGGAAACTTGAATGTTCGTCGAGTGTGGGATTTGATTTGTTGGTTCAAGGTTATGTGCAAAATAAGAGGGTTTTGGATGGTGTTTTGGTTGTGAGGCTGATGAGGGAGTGTGAAATGTTGCCGGAGGTGAGAACTTTGAATGCCCTTTTAAATGGGTTGGTGAAAATTAGGCATTTCAATTTGGTTCTGCAACTCTTTGATGAAATGATCAATGTGGGTCTTCGACCCGATGTTTATATGTATACTGCCGCGGTTAGGAGCTTGTGTGAATTGAAGAATTTAGATAAGGCTAAGGAAGTGATTCGGTACGCTGAATCGAATACGTGTGAGTTGAGTGTTGTTATGTATAATGTGTTGATTCATGGGCTCTGCAAGTGCCAGAGGGTTTGGGAGGCTGTAGAGGTTAAGAATATGTTGGGTCAGAAGGGGTTGAAAGCGGACATTGTCACATATTGTACTTTGGTGCTTGGGTTGTGTAAAGTGCAGGAATTTGAGGTTGGTGTGGAGTTAATGAATGAAATGATTGAGCTGGGGTTTGTTCCGAGTGAAGCAGCTCTTTCGGGTCTCATGGAGGGGTTGAGGAGGAAGGGGAAGATTGAAGATGCTTTTGATTTAGTGAAGAGAATGGGAGAAGTTGGGGTGGTTCCTAATTTGTTTGCGTACAATTCATTGCTTAATTCTTTGTGTAAAGATGGGAAACTGGATGAGGCAGAATTGCTCTTCGATAACATGGGAAAGAAGGGTATGTTCCCCAATGATGTAACCTATTCTATATTGATTGATTCCTTCTGCCGAAGGGGGATGTTGGATGTTGCATTTCGTTATTTTGATAAAATGATTAATGCTGGAGTTAAGGTAACTGTTTACCCCTACAATTCTTTGATAAGCGGGCAATGCAAGTTTGGAACATTGAGTGTGGCGGAATCTATCTTCTGTGAGATGATGAATAAAGGAGTGGTTCCAACCGTTGTAACCTATACATCATTGATAAGTGGGTACTGCAAAGAAGGAGAGATGCACAAGGCATTTAGGTTGTATCATGAAATGATGGAAAAAGGCATTACGCCAAACACTTACACCTTCAGTGTAATTATTTCAGGTCTTTGTCGTGCAAATATGATGGCTGAAGCAACAAAATTATTTGATGAAATGGTGAAAAGGGGCGTTTTGCCAAACGAGGTGACTTATAATCTTATGATTGATGGGCACTGCCGACAAGGTAACACAGTTAGAGGCTTTGAATTGCTTGATGAAATGGTTGAGAAGGGTCTTGTACCAGACACGTATACATATAGACCTCTAATAAGTGGTCTGTGTTCGACGGGCAGAGTGTCTGAAGCCAAAAAGTTCGTAGATGACCTTCACAAAGAGAATTACAAGTTAAATGAGATGTGCTATAGTGCACTGCTACATGGTTATTGCAAGGAAGGAAGATTACACGATGCATTAGGTGCTTGTCGTGAGATGATTGAAAGAGGAGTAGACATGGATCTTGTGTGCTATGCTGTACTAATTTGTGGAGCTTTAAAGCAACAGGATACCGGAAGATTATTTGGTCTCTTTAATGAGATGCATAATCAAGGATTGAGGCCTGATAATGTAATATATACAAGTATGATCGATGAATATGGGAAAGCGGGGAAACTTGACAAGGCAATTGGGGTTTGGGATATAATGGTAGGTGAAGGATGCTTACCTAATGTTGTGACTTACACTGCCTTGGTATATGGATTATGTAAGGCAGGTTATATGGATAAAGCAGAGCTTGTTTTGAAGGATATGCTCGTCGGTGATGCCTTTCCCAATCATGTCACATATGGTTGTTTCTTAAATCACCTTAGCAAAGAAGGAACCATGGAAAAAGCTTTACAACTGCACAATGACATGCTTGCAGGATTGTCAGCAAACACCGCCACATACAATATACTTATCAGGGGTTTCTGCAAAATGGGAAAGTTTCAGGAAGCTTCACAGCTCCTGGTTGAAATGACAGTCAATGGTATTTACCCAGATTGTATTACGTATTCAACATTTATCTATGAGTACTGTAGGAGGGGCAATTTGCTAGAAGCTATTAAGCTGTGGGATGTTATGCTAGATAGGGGTCTGAAGCCTGATATTCTAGCATATAACTTTTTGATATACGGGTGTTGTGTCACTGGAGAAATAACCAAGGCCTTCGAGTTGCGTGATGACATGATGAGAAGAGGGTTGAAGCCAAATCGAGTTACATATAACACACTTATCCGTGGAACTTGCCTGACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

909

Amino Acids

102.32

Weight (kDa)

7.18

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	193 - 241	2e-08	PPR repeat family
PPR_3	PF13812	217 - 273	8.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	261 - 287	3.1e-07	PPR repeat
PPR_2	PF13041	264 - 312	5.6e-11	PPR repeat family
PPR_long	PF17177	317 - 413	1.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	341 - 382	2.5e-08	PPR repeat family
PPR_1	PF12854	365 - 396	7e-11	PPR repeat
PPR_2	PF13041	368 - 417	8.6e-18	PPR repeat family
PPR	PF01535	372 - 400	2.3e-07	PPR repeat
PPR_1	PF12854	399 - 431	1.6e-12	PPR repeat
PPR_long	PF17177	404 - 529	3.2e-09	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	406 - 436	3e-07	PPR repeat
PPR_2	PF13041	410 - 452	2.6e-08	PPR repeat family
PPR_3	PF13812	428 - 482	8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	441 - 486	1.3e-12	PPR repeat family
PPR_3	PF13812	461 - 518	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	469 - 501	3.4e-14	PPR repeat
PPR_2	PF13041	473 - 522	5.5e-22	PPR repeat family
PPR	PF01535	476 - 506	5.8e-11	PPR repeat
PPR_1	PF12854	504 - 537	1.7e-12	PPR repeat
PPR	PF01535	511 - 541	1.9e-07	PPR repeat
PPR_2	PF13041	516 - 557	1.4e-15	PPR repeat family
PPR_long	PF17177	525 - 630	6.3e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	527 - 639	2.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	531 - 588	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	539 - 572	5.9e-11	PPR repeat
PPR_2	PF13041	544 - 591	1.3e-15	PPR repeat family
PPR	PF01535	546 - 576	5.4e-08	PPR repeat
PPR_1	PF12854	574 - 605	7.2e-09	PPR repeat
PPR_2	PF13041	586 - 627	2.9e-07	PPR repeat family
PPR_1	PF12854	610 - 641	2.1e-07	PPR repeat
PPR_2	PF13041	614 - 659	1.2e-08	PPR repeat family
PPR	PF01535	617 - 646	2.8e-06	PPR repeat
PPR_2	PF13041	649 - 693	2.7e-06	PPR repeat family
PPR_3	PF13812	672 - 727	1.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	680 - 712	2.1e-07	PPR repeat
PPR_2	PF13041	683 - 732	9.4e-15	PPR repeat family
PPR	PF01535	686 - 716	1.3e-06	PPR repeat
PPR_1	PF12854	715 - 746	1.2e-11	PPR repeat
PPR_2	PF13041	718 - 763	3.4e-09	PPR repeat family
PPR_2	PF13041	753 - 801	9.8e-13	PPR repeat family
PPR_long	PF17177	770 - 899	4.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	784 - 816	1.5e-10	PPR repeat
PPR_2	PF13041	788 - 836	1.4e-14	PPR repeat family
PPR	PF01535	791 - 820	1.3e-07	PPR repeat
PPR_1	PF12854	818 - 850	2e-09	PPR repeat
PPR_2	PF13041	825 - 870	1.2e-11	PPR repeat family
PPR_3	PF13812	847 - 901	2.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	853 - 885	2.8e-06	PPR repeat
PPR_2	PF13041	857 - 905	1.2e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59900
fragaria_vesca	FvH4_3g35360
malus_domestica	MD11G1144200.v1.1
prunus_persica	Prupe.6G082100_v2.0.a1
pyrus_communis	pycom11g09360
rosa_chinensis	RchiOBHm_Chr5g0063471
rosa_laevigata	RLG00000035637
rosa_multiflora	Rmu_sc0016394.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017250
rosa_rugosa	Rorug05G0357500
rosa_samantha	Rh5AG416600 Rh5BG431800 Rh5CG455100 Rh5DG445300
rosa_wichuraiana	Rw5G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1644
Acc36I	ACCTGC	1 cut(s)	2189
AccI	GTMKAC	3 cut(s)	698, 1742, 1938
AccII	CGCG	1 cut(s)	707
AclWI	GGATC	2 cut(s)	238, 1953
AcsI	RAATTY	3 cut(s)	448, 733, 944
AcuI	CTGAAG	5 cut(s)	295, 1522, 1602, 1812, 2585
AcyI	GRCGYC	2 cut(s)	126, 326
AfaI	GTAC	8 cut(s)	255, 764, 913, 1118, 1454, 1731, 1965, 2501
AfiI	CCNNNNNNNGG	5 cut(s)	151, 322, 358, 427, 711
AflIII	ACRYGT	2 cut(s)	779, 1737
AjnI	CCWGG	3 cut(s)	263, 351, 2433
AjuI	GAANNNNNNNTTGG	2 cut(s)	936, 968
Alw21I	GWGCWC	1 cut(s)	1861
Alw26I	GTCTC	2 cut(s)	1025, 2018
Alw44I	GTGCAC	1 cut(s)	1857
AlwI	GGATC	2 cut(s)	238, 1953
AlwNI	CAGNNNCTG	1 cut(s)	2434
AoxI	GGCC	3 cut(s)	374, 2045, 2631
ApaLI	GTGCAC	1 cut(s)	1857
ApeKI	GCWGC	1 cut(s)	1007
ApoI	RAATTY	3 cut(s)	448, 733, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	1296
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	8 cut(s)	133, 595, 628, 1621, 1648, 2150, 2258, 2282
BaeGI	GKGCMC	2 cut(s)	1665, 1861
BanII	GRGCYC	2 cut(s)	222, 825
BarI	GAAGNNNNNNTAC	6 cut(s)	1800, 1832, 1875, 1907, 2133, 2165
BbsI	GAAGAC	2 cut(s)	130, 668
Bbv12I	GWGCWC	1 cut(s)	1861
BbvI	GCAGC	1 cut(s)	1019
BccI	CCATC	6 cut(s)	27, 527, 1142, 1498, 1570, 1652
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	996, 1030
BciT130I	CCWGG	3 cut(s)	265, 353, 2435
BciVI	GTATCC	1 cut(s)	1987
BclI	TGATCA	1 cut(s)	663
BcoDI	GTCTC	2 cut(s)	1025, 2018
BfaI	CTAG	3 cut(s)	2522, 2552, 2579
BfmI	CTRYAG	3 cut(s)	852, 1852, 2503
BfuAI	ACCTGC	1 cut(s)	2189
BfuI	GTATCC	1 cut(s)	1987
BisI	GCNGC	2 cut(s)	705, 1008
BlsI	GCNGC	2 cut(s)	706, 1009
BmcAI	AGTACT	1 cut(s)	2501
Bme1390I	CCNGG	3 cut(s)	265, 353, 2435
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	4 cut(s)	219, 1101, 1416, 2308
BmrFI	CCNGG	3 cut(s)	265, 353, 2435
BmsI	GCATC	6 cut(s)	1048, 1461, 1888, 2016, 2135, 2239
BpiI	GAAGAC	2 cut(s)	130, 668
BpmI	CTGGAG	2 cut(s)	1323, 2637
Bpu10I	CCTNAGC	2 cut(s)	747, 2294
Bsa29I	ATCGAT	1 cut(s)	2076
BsaAI	YACGTR	3 cut(s)	780, 1740, 2478
BsaHI	GRCGYC	2 cut(s)	126, 326
BsaI	GGTCTC	2 cut(s)	1025, 2018
BsaJI	CCNNGG	9 cut(s)	150, 213, 263, 351, 705, 2175, 2310, 2628, 2704
BsaWI	WCCGGW	1 cut(s)	1997
BsaXI	ACNNNNNCTCC	4 cut(s)	706, 736, 1296, 1326
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 322, 358, 427, 711
Bse1I	ACTGG	2 cut(s)	1161, 2620
Bse3DI	GCAATG	2 cut(s)	1124, 1355
BseBI	CCWGG	3 cut(s)	265, 353, 2435
BseCI	ATCGAT	1 cut(s)	2076
BseDI	CCNNGG	9 cut(s)	150, 213, 263, 351, 705, 2175, 2310, 2628, 2704
BseGI	GGATG	7 cut(s)	42, 538, 1165, 1263, 1270, 2150, 2548
BseLI	CCNNNNNNNGG	5 cut(s)	151, 322, 358, 427, 711
BseMI	GCAATG	2 cut(s)	1124, 1355
BseNI	ACTGG	2 cut(s)	1161, 2620
BseRI	GAGGAG	5 cut(s)	70, 73, 76, 1051, 1947
BseSI	GKGCMC	2 cut(s)	1665, 1861
BseXI	GCAGC	1 cut(s)	1019
BseYI	CCCAGC	1 cut(s)	985
BsgI	GTGCAG	2 cut(s)	959, 2315
Bsh1236I	CGCG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	376, 2047, 2633
BshVI	ATCGAT	1 cut(s)	2076
BsiHKAI	GWGCWC	1 cut(s)	1861
BsiSI	CCGG	2 cut(s)	578, 1998
BsiWI	CGTACG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	5 cut(s)	151, 322, 358, 427, 711
BsmAI	GTCTC	2 cut(s)	1025, 2018
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	336, 601
BsnI	GGCC	3 cut(s)	376, 2047, 2633
Bso31I	GGTCTC	2 cut(s)	1025, 2018
Bsp1286I	GDGCHC	4 cut(s)	222, 825, 1665, 1861
Bsp143I	GATC	4 cut(s)	243, 663, 1945, 2073
Bsp19I	CCATGG	1 cut(s)	2310
BspANI	GGCC	3 cut(s)	376, 2047, 2633
BspDI	ATCGAT	1 cut(s)	2076
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	1495
BspLI	GGNNCC	4 cut(s)	219, 1101, 1416, 2308
BspMI	ACCTGC	1 cut(s)	2189
BspPI	GGATC	2 cut(s)	238, 1953
BspQI	GCTCTTC	1 cut(s)	1181
BspTNI	GGTCTC	2 cut(s)	1025, 2018
BsrDI	GCAATG	2 cut(s)	1124, 1355
BsrI	ACTGG	2 cut(s)	1161, 2620
BssECI	CCNNGG	9 cut(s)	150, 213, 263, 351, 705, 2175, 2310, 2628, 2704
BssMI	GATC	4 cut(s)	243, 663, 1945, 2073
BssNAI	GTATAC	2 cut(s)	699, 1743
BssNI	GRCGYC	2 cut(s)	126, 326
BssT1I	CCWWGG	4 cut(s)	213, 2175, 2310, 2628
Bst1107I	GTATAC	2 cut(s)	699, 1743
Bst2UI	CCWGG	3 cut(s)	265, 353, 2435
Bst4CI	ACNGT	5 cut(s)	1318, 1423, 1684, 2449, 2504
Bst6I	CTCTTC	3 cut(s)	1070, 1181, 2656
BstACI	GRCGYC	2 cut(s)	126, 326
BstAPI	GCANNNNNTGC	1 cut(s)	1907
BstBAI	YACGTR	3 cut(s)	780, 1740, 2478
BstC8I	GCNNGC	7 cut(s)	9, 130, 183, 299, 378, 1346, 2346
BstDEI	CTNAG	2 cut(s)	747, 2294
BstDSI	CCRYGG	3 cut(s)	705, 2310, 2704
BstENI	CCTNNNNNAGG	2 cut(s)	149, 356
BstF5I	GGATG	7 cut(s)	42, 538, 1165, 1263, 1270, 2150, 2548
BstFNI	CGCG	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	246, 666, 1948, 2076
BstMAI	GTCTC	2 cut(s)	1025, 2018
BstMBI	GATC	4 cut(s)	243, 663, 1945, 2073
BstMWI	GCNNNNNNNGC	3 cut(s)	1350, 1907, 2366
BstNI	CCWGG	3 cut(s)	265, 353, 2435
BstNSI	RCATGY	1 cut(s)	2344
BstSCI	CCNGG	3 cut(s)	263, 351, 2433
BstSFI	CTRYAG	3 cut(s)	852, 1852, 2503
BstSLI	GKGCMC	2 cut(s)	1665, 1861
BstSNI	TACGTA	1 cut(s)	2478
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	1019
BstV2I	GAAGAC	2 cut(s)	130, 668
BstX2I	RGATCY	1 cut(s)	1945
BstYI	RGATCY	1 cut(s)	1945
BstZ17I	GTATAC	2 cut(s)	699, 1743
Bsu15I	ATCGAT	1 cut(s)	2076
BsuI	GTATCC	1 cut(s)	1987
BsuRI	GGCC	3 cut(s)	376, 2047, 2633
BsuTUI	ATCGAT	1 cut(s)	2076
BtgI	CCRYGG	3 cut(s)	705, 2310, 2704
BtsCI	GGATG	7 cut(s)	42, 538, 1165, 1263, 1270, 2150, 2548
BtsI	GCAGTG	3 cut(s)	1663, 1859, 2169
BtsIMutI	CAGTG	5 cut(s)	1546, 1663, 1859, 2169, 2613
BveI	ACCTGC	1 cut(s)	2189
Cac8I	GCNNGC	7 cut(s)	9, 130, 183, 299, 378, 1346, 2346
CaiI	CAGNNNCTG	1 cut(s)	2434
CciI	TCATGA	1 cut(s)	1495
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	375
Cfr42I	CCGCGG	1 cut(s)	708
ClaI	ATCGAT	1 cut(s)	2076
CseI	GACGC	2 cut(s)	134, 315
Csp6I	GTAC	8 cut(s)	254, 763, 912, 1117, 1453, 1730, 1964, 2500
CviQI	GTAC	8 cut(s)	254, 763, 912, 1117, 1453, 1730, 1964, 2500
DdeI	CTNAG	2 cut(s)	747, 2294
DpnI	GATC	4 cut(s)	245, 665, 1947, 2075
DpnII	GATC	4 cut(s)	243, 663, 1945, 2073
DraI	TTTAAA	2 cut(s)	606, 1983
Eam1104I	CTCTTC	3 cut(s)	1070, 1181, 2656
EarI	CTCTTC	3 cut(s)	1070, 1181, 2656
EciI	GGCGGA	1 cut(s)	1391
Eco105I	TACGTA	1 cut(s)	2478
Eco130I	CCWWGG	4 cut(s)	213, 2175, 2310, 2628
Eco147I	AGGCCT	2 cut(s)	2047, 2633
Eco24I	GRGCYC	2 cut(s)	222, 825
Eco31I	GGTCTC	2 cut(s)	1025, 2018
Eco57I	CTGAAG	5 cut(s)	295, 1522, 1602, 1812, 2585
EcoNI	CCTNNNNNAGG	2 cut(s)	149, 356
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	263, 351, 2433
EcoT14I	CCWWGG	4 cut(s)	213, 2175, 2310, 2628
EcoT22I	ATGCAT	2 cut(s)	1903, 2031
EcoT38I	GRGCYC	2 cut(s)	222, 825
ErhI	CCWWGG	4 cut(s)	213, 2175, 2310, 2628
FalI	AAGNNNNNCTT	6 cut(s)	170, 202, 996, 1028, 2205, 2237
FaqI	GGGAC	1 cut(s)	9
FauI	CCCGC	5 cut(s)	137, 230, 385, 1337, 2086
FauNDI	CATATG	1 cut(s)	2272
FbaI	TGATCA	1 cut(s)	663
FblI	GTMKAC	3 cut(s)	698, 1742, 1938
Fnu4HI	GCNGC	2 cut(s)	705, 1008
FokI	GGATG	7 cut(s)	29, 545, 1172, 1270, 1277, 2157, 2555
FriOI	GRGCYC	2 cut(s)	222, 825
Fsp4HI	GCNGC	2 cut(s)	705, 1008
FspBI	CTAG	3 cut(s)	2522, 2552, 2579
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	2 cut(s)	705, 1008
GsaI	CCCAGC	1 cut(s)	989
GsuI	CTGGAG	2 cut(s)	1323, 2637
HaeIII	GGCC	3 cut(s)	376, 2047, 2633
HapII	CCGG	2 cut(s)	578, 1998
HgaI	GACGC	2 cut(s)	134, 315
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	2 cut(s)	126, 326
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	3 cut(s)	307, 2319, 2421
HinfI	GANTC	7 cut(s)	259, 343, 757, 770, 814, 1238, 1379
HpaII	CCGG	2 cut(s)	578, 1998
HphI	GGTGA	8 cut(s)	133, 595, 628, 1621, 1648, 2150, 2258, 2282
Hpy166II	GTNNAC	5 cut(s)	699, 1321, 1743, 1859, 1939
Hpy188I	TCNGA	7 cut(s)	151, 243, 342, 879, 999, 1792, 2565
Hpy188III	TCNNGA	4 cut(s)	247, 1496, 1916, 2417
Hpy8I	GTNNAC	5 cut(s)	699, 1321, 1743, 1859, 1939
Hpy99I	CGWCG	7 cut(s)	125, 128, 331, 388, 478, 1780, 2246
HpyCH4III	ACNGT	5 cut(s)	1318, 1423, 1684, 2449, 2504
HpyCH4IV	ACGT	5 cut(s)	228, 252, 779, 1739, 2477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1350, 1907, 2366
HpyF3I	CTNAG	2 cut(s)	747, 2294
HpySE526I	ACGT	5 cut(s)	228, 252, 779, 1739, 2477
Hsp92I	GRCGYC	2 cut(s)	126, 326
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	663
KspI	CCGCGG	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	243, 663, 1945, 2073
LguI	GCTCTTC	1 cut(s)	1181
LmnI	GCTCC	4 cut(s)	217, 714, 1976, 2436
Lsp1109I	GCAGC	1 cut(s)	1019
LweI	GCATC	6 cut(s)	1048, 1461, 1888, 2016, 2135, 2239
MaeI	CTAG	3 cut(s)	2522, 2552, 2579
MaeII	ACGT	5 cut(s)	228, 252, 779, 1739, 2477
MalI	GATC	4 cut(s)	245, 665, 1947, 2075
MboI	GATC	4 cut(s)	243, 663, 1945, 2073
MfeI	CAATTG	1 cut(s)	2112
MflI	RGATCY	1 cut(s)	1945
MhlI	GDGCHC	4 cut(s)	222, 825, 1665, 1861
MmeI	TCCRAC	2 cut(s)	1242, 1442
Mph1103I	ATGCAT	2 cut(s)	1903, 2031
MroXI	GAANNNNTTC	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	2 cut(s)	578, 1998
MspR9I	CCNGG	3 cut(s)	265, 353, 2435
MunI	CAATTG	1 cut(s)	2112
Mva1269I	GAATGC	2 cut(s)	336, 601
MvaI	CCWGG	3 cut(s)	265, 353, 2435
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	3 cut(s)	1350, 1907, 2366
NcoI	CCATGG	1 cut(s)	2310
NdeI	CATATG	1 cut(s)	2272
NdeII	GATC	4 cut(s)	243, 663, 1945, 2073
NlaIV	GGNNCC	4 cut(s)	219, 1101, 1416, 2308
NmuCI	GTSAC	5 cut(s)	901, 1636, 2161, 2266, 2611
NsiI	ATGCAT	2 cut(s)	1903, 2031
NspI	RCATGY	1 cut(s)	2344
PagI	TCATGA	1 cut(s)	1495
PceI	AGGCCT	2 cut(s)	2047, 2633
PciSI	GCTCTTC	1 cut(s)	1181
PcsI	WCGNNNNNNNCGW	4 cut(s)	19, 120, 132, 189
PctI	GAATGC	2 cut(s)	336, 601
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	7 cut(s)	259, 343, 757, 770, 814, 1238, 1379
Pfl23II	CGTACG	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	899
PkrI	GCNGC	2 cut(s)	706, 1009
Ppu21I	YACGTR	3 cut(s)	780, 1740, 2478
PshBI	ATTAAT	1 cut(s)	1296
PsiI	TTATAA	1 cut(s)	1644
Psp6I	CCWGG	3 cut(s)	263, 351, 2433
PspFI	CCCAGC	1 cut(s)	985
PspGI	CCWGG	3 cut(s)	263, 351, 2433
PspLI	CGTACG	1 cut(s)	253
PspN4I	GGNNCC	4 cut(s)	219, 1101, 1416, 2308
PspPI	GGNCC	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	2434
PsuI	RGATCY	1 cut(s)	1945
PsyI	GACNNNGTC	1 cut(s)	899
RsaI	GTAC	8 cut(s)	255, 764, 913, 1118, 1454, 1731, 1965, 2501
RsaNI	GTAC	8 cut(s)	254, 763, 912, 1117, 1453, 1730, 1964, 2500
SacII	CCGCGG	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	1181
SatI	GCNGC	2 cut(s)	705, 1008
Sau3AI	GATC	4 cut(s)	243, 663, 1945, 2073
Sau96I	GGNCC	1 cut(s)	375
ScaI	AGTACT	1 cut(s)	2501
ScrFI	CCNGG	3 cut(s)	265, 353, 2435
SduI	GDGCHC	4 cut(s)	222, 825, 1665, 1861
SfaNI	GCATC	6 cut(s)	1048, 1461, 1888, 2016, 2135, 2239
SfcI	CTRYAG	3 cut(s)	852, 1852, 2503
Sfr303I	CCGCGG	1 cut(s)	708
SgrBI	CCGCGG	1 cut(s)	708
SnaBI	TACGTA	1 cut(s)	2478
SseBI	AGGCCT	2 cut(s)	2047, 2633
SspMI	CTAG	3 cut(s)	2522, 2552, 2579
StuI	AGGCCT	2 cut(s)	2047, 2633
StyD4I	CCNGG	3 cut(s)	263, 351, 2433
StyI	CCWWGG	4 cut(s)	213, 2175, 2310, 2628
TaaI	ACNGT	5 cut(s)	1318, 1423, 1684, 2449, 2504
TaiI	ACGT	5 cut(s)	231, 255, 782, 1742, 2480
TaqI	TCGA	8 cut(s)	476, 679, 773, 1179, 1775, 2076, 2637, 2680
TatI	WGTACW	3 cut(s)	911, 1963, 2499
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	7 cut(s)	259, 343, 757, 770, 814, 1238, 1379
TscAI	CASTG	5 cut(s)	1546, 1670, 1866, 2176, 2620
TseFI	GTSAC	5 cut(s)	901, 1636, 2161, 2266, 2611
TseI	GCWGC	1 cut(s)	1007
Tsp45I	GTSAC	5 cut(s)	901, 1636, 2161, 2266, 2611
TspGWI	ACGGA	2 cut(s)	271, 2693
TspRI	CASTG	5 cut(s)	1546, 1670, 1866, 2176, 2620
Tth111I	GACNNNGTC	1 cut(s)	899
VneI	GTGCAC	1 cut(s)	1857
VspI	ATTAAT	1 cut(s)	1296
XagI	CCTNNNNNAGG	2 cut(s)	149, 356
XapI	RAATTY	3 cut(s)	448, 733, 944
XceI	RCATGY	1 cut(s)	2344
XmiI	GTMKAC	3 cut(s)	698, 1742, 1938
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	3 cut(s)	2522, 2552, 2579
ZrmI	AGTACT	1 cut(s)	2501
Zsp2I	ATGCAT	2 cut(s)	1903, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.