AT5G60050

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012131
Physical Location & Seq
Reverse (-)
24183567 .. 24185629
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60050.1

Sequence Viewer

Length: 1500 bp
ATGGCGTCAAGAGAAGTATCAACGATGATCAAACAAGGGTTTATCGCAGACCCTTCTCTCTCTTTTTCTCCGTCAAGAATCTCATCTCCGATTAAACTCTCCACCGCCTCTCCTCCTCTTCCTCCGCCACCTCCTCCGCCACCAAACGAATCGACTCTCTCAAACCCGACTCTTTTCGATATGATGTCAGACGAGCACAACCGCGAGCTACCAAGGAGGAAATCTCACGCGCGCGTGGCTCAAATCTTGACGGAGTTCAAGAACGGCGTCGTTTACGGCCACAGCCTCGGGCCAGGAGACGTTAAGCTGACTGTGGTGGGCAAAGACGGTTACAGAGTCACTATGGATGTTCATCGGAAGGTTTTATCTGAGAAGAGTAGGTTTTTTATGGAGAAGATGAATTCTAGAAGAGAGAAAGGAGTTTCTCACATGGTGGAGATAAGTGAGTGTGATGATTTAGAGATTTATGTAGAGACTGTTGTTTTGATGTATAGTGATGATCTCAAGAAGAAGTTGATCGGTGAAAATGTCATCAAAATCTTGGCTTTACTCAAGGTTTCTGCAGCTATCTCGTTTGATGAAGGCGTTATGTCATGTTTGGAGCATTTGGAAGCTGTACCATGGTCAGAAGATGAAGAAGAGACTGTTGTGACTTGTCTTGAAGAGCTTCATCTTCCTGATGATTCTGTCACTTTGATTCTTCAGAGAGTTTCATCTCAACCTTCGACTTCCTCAACGAGAACTAGAACTGATGATATCTTTTCGAAGCTTCTCACTGGTGTTCTACAAGCGAAAGATGATAAAGCTCGGCGAGAGATGAAAGTTTTGATCTTTAAATTGGTTAGAGAAGAAGCCGATTATGATGTCTCTAGAGACACACTCTATGGTTTGTGCCATCGATGTCTCACGTCTCTTGTGCTTTGCTTATCTGAAGTGACCACACAGATGAATGATCCGGGGAAAGACCGTGGTGCTCTGATGGGAGAAATCGCCAGAGAAGCTGATAACATGCTGTGGATGGTAGATATATTGATTGAGAAGAAACTGTGCAGTGAGTTTGTGAAACTATGGGCGGATCAAAAGGAGCTAGCGAATCTTCATTCCAAGATCCCAACGATGTACAGACACGAAATAAGCAAGATCACCGCGCAGATATGTGTTGGTATTGGTAAAGGAAGGATCTTGGTGAATCGGGAGACTAGGTTTGCGGTTCTGAATACATGGTTAGAGGCTTTGTATGATGATTTCGGGTGGATGAGACGGTTATCCTCGAGATCTCTGGATAGGAAACTGGTGGAGGATGGACTCAGCCAGACCATATTGACTTTGTCGTTGAGACAACAACAAGTGATTCTGATGAAATGGTTTGATCGGTTTCTGAGCAAAGGTGATGATTGTCCAAATGTGCAACGAGCATTTGAGGTGTGGTGGAGAAGAGCTTTCATAAGACAGGTCTTGACAGAGCCCGATGAGCCTCGGCTGCAGATTACACTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

56.94

Weight (kDa)

6.14

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 251 - 483 7.2e-62 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60050
fragaria_vesca FvH4_3g34280
malus_domestica MD03G1106900.v1.1 MD11G1119600.v1.1
prunus_persica Prupe.6G089700_v2.0.a1
pyrus_communis pycom03g08630 pycom11g10090
rosa_chinensis RchiOBHm_Chr5g0061841 RchiOBHm_Chr5g0061851
rosa_laevigata RLG00000035510
rosa_multiflora Rmu_sc0004134.1_g000002 Rmu_sc0011641.1_g000016
rosa_roxburghii Rroxscaffold_1G00018890
rosa_rugosa Rorug05G0344800
rosa_samantha Rh5AG405400 Rh5BG418200 Rh5CG442700 Rh5DG432300
rosa_wichuraiana Rw5G038060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 204, 230, 232, 234, 1148
AciI CCGC 7 cut(s) 105, 125, 137, 202, 1073, 1146, 1208
AclWI GGATC 4 cut(s) 947, 1083, 1102, 1187
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 2 cut(s) 686, 951
AcyI GRCGYC 2 cut(s) 5, 267
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 2 cut(s) 618, 1121
AgsI TTSAA 2 cut(s) 259, 662
AjiI CACGTC 1 cut(s) 909
AjnI CCWGG 1 cut(s) 292
Alw21I GWGCWC 2 cut(s) 198, 976
AlwI GGATC 4 cut(s) 947, 1083, 1102, 1187
Ama87I CYCGRG 2 cut(s) 287, 1270
AoxI GGCC 2 cut(s) 277, 290
ApeKI GCWGC 2 cut(s) 563, 1480
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 3 cut(s) 232, 234, 1150
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 957
AsuHPI GGTGA 4 cut(s) 533, 1135, 1198, 1400
AsuII TTCGAA 1 cut(s) 764
AsuNHI GCTAGC 1 cut(s) 1087
AvaI CYCGRG 2 cut(s) 287, 1270
BanII GRGCYC 1 cut(s) 1467
Bbv12I GWGCWC 2 cut(s) 198, 976
BbvI GCAGC 2 cut(s) 575, 1467
BccI CCATC 4 cut(s) 903, 973, 1012, 1295
BceAI ACGGC 2 cut(s) 280, 292
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 957
BfaI CTAG 5 cut(s) 405, 744, 870, 1088, 1200
BfmI CTRYAG 2 cut(s) 561, 1481
BglII AGATCT 1 cut(s) 1274
BisI GCNGC 2 cut(s) 564, 1481
BlsI GCNGC 2 cut(s) 565, 1482
Bme1390I CCNGG 2 cut(s) 294, 957
BmeT110I CYCGRG 2 cut(s) 287, 1270
BmgBI CACGTC 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 294, 957
BmtI GCTAGC 1 cut(s) 1091
BplI GAGNNNNNCTC 4 cut(s) 208, 240, 864, 896
Bpu14I TTCGAA 1 cut(s) 764
BpuEI CTTGAG 2 cut(s) 488, 536
BpuMI CCSGG 1 cut(s) 957
Bsa29I ATCGAT 1 cut(s) 898
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 5, 267
BsaJI CCNNGG 6 cut(s) 212, 286, 620, 956, 967, 1475
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 1187, 1217
Bse1I ACTGG 2 cut(s) 781, 1296
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 898
BseDI CCNNGG 6 cut(s) 212, 286, 620, 956, 967, 1475
BseGI GGATG 4 cut(s) 352, 1023, 1260, 1306
BseJI GATNNNNATC 1 cut(s) 351
BseMII CTCAG 3 cut(s) 360, 1321, 1370
BseNI ACTGG 2 cut(s) 781, 1296
BsePI GCGCGC 1 cut(s) 230
BseRI GAGGAG 3 cut(s) 102, 105, 123
BseXI GCAGC 2 cut(s) 575, 1467
BsgI GTGCAG 1 cut(s) 1069
Bsh1236I CGCG 5 cut(s) 204, 230, 232, 234, 1148
BshFI GGCC 2 cut(s) 279, 292
BshVI ATCGAT 1 cut(s) 898
BsiHKAI GWGCWC 2 cut(s) 198, 976
BsiHKCI CYCGRG 2 cut(s) 287, 1270
BsiSI CCGG 1 cut(s) 956
BsmBI CGTCTC 3 cut(s) 291, 915, 1252
BsnI GGCC 2 cut(s) 279, 292
BsoBI CYCGRG 2 cut(s) 287, 1270
Bsp119I TTCGAA 1 cut(s) 764
Bsp1286I GDGCHC 3 cut(s) 198, 976, 1467
Bsp1407I TGTACA 1 cut(s) 1119
Bsp19I CCATGG 1 cut(s) 620
BspACI CCGC 7 cut(s) 105, 125, 137, 202, 1073, 1146, 1208
BspANI GGCC 2 cut(s) 279, 292
BspCNI CTCAG 3 cut(s) 361, 1320, 1371
BspDI ATCGAT 1 cut(s) 898
BspFNI CGCG 5 cut(s) 204, 230, 232, 234, 1148
BspMAI CTGCAG 2 cut(s) 565, 1485
BspOI GCTAGC 1 cut(s) 1091
BspPI GGATC 4 cut(s) 947, 1083, 1102, 1187
BspQI GCTCTTC 2 cut(s) 657, 1429
BspT104I TTCGAA 1 cut(s) 764
BsrGI TGTACA 1 cut(s) 1119
BsrI ACTGG 2 cut(s) 781, 1296
BssECI CCNNGG 6 cut(s) 212, 286, 620, 956, 967, 1475
BssHII GCGCGC 1 cut(s) 230
BssNI GRCGYC 2 cut(s) 5, 267
BssT1I CCWWGG 2 cut(s) 212, 620
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 7 cut(s) 313, 329, 478, 646, 968, 1047, 1263
Bst6I CTCTTC 6 cut(s) 123, 368, 403, 633, 657, 1429
BstACI GRCGYC 2 cut(s) 5, 267
BstAUI TGTACA 1 cut(s) 1119
BstBI TTCGAA 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 206, 232, 1089
BstDEI CTNAG 3 cut(s) 369, 1307, 1379
BstDSI CCRYGG 2 cut(s) 620, 967
BstF5I GGATG 4 cut(s) 352, 1023, 1260, 1306
BstFNI CGCG 5 cut(s) 204, 230, 232, 234, 1148
BstHHI GCGC 3 cut(s) 232, 234, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 236, 998, 1471, 1480
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 1012
BstSCI CCNGG 2 cut(s) 292, 955
BstSFI CTRYAG 2 cut(s) 561, 1481
BstUI CGCG 5 cut(s) 204, 230, 232, 234, 1148
BstV1I GCAGC 2 cut(s) 575, 1467
BstX2I RGATCY 3 cut(s) 1107, 1179, 1274
BstYI RGATCY 3 cut(s) 1107, 1179, 1274
Bsu15I ATCGAT 1 cut(s) 898
BsuRI GGCC 2 cut(s) 279, 292
BsuTUI ATCGAT 1 cut(s) 898
BtgI CCRYGG 2 cut(s) 620, 967
BtrI CACGTC 1 cut(s) 909
BtsCI GGATG 4 cut(s) 352, 1023, 1260, 1306
BtsI GCAGTG 1 cut(s) 1057
BtsIMutI CAGTG 2 cut(s) 774, 1057
Cac8I GCNNGC 3 cut(s) 206, 232, 1089
CfoI GCGC 3 cut(s) 232, 234, 1150
Cfr13I GGNCC 1 cut(s) 290
ClaI ATCGAT 1 cut(s) 898
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 617, 1120
CviAII CATG 5 cut(s) 430, 594, 621, 1009, 1221
CviQI GTAC 2 cut(s) 617, 1120
DdeI CTNAG 3 cut(s) 369, 1307, 1379
DraI TTTAAA 1 cut(s) 835
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 6 cut(s) 123, 368, 403, 633, 657, 1429
EarI CTCTTC 6 cut(s) 123, 368, 403, 633, 657, 1429
EciI GGCGGA 3 cut(s) 114, 126, 1088
Eco130I CCWWGG 2 cut(s) 212, 620
Eco24I GRGCYC 1 cut(s) 1467
Eco32I GATATC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 686, 951
Eco88I CYCGRG 2 cut(s) 287, 1270
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 212, 620
EcoT38I GRGCYC 1 cut(s) 1467
ErhI CCWWGG 2 cut(s) 212, 620
Esp3I CGTCTC 3 cut(s) 291, 915, 1252
FaeI CATG 5 cut(s) 433, 597, 624, 1012, 1224
FatI CATG 5 cut(s) 429, 593, 620, 1008, 1220
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 564, 1481
FokI GGATG 4 cut(s) 359, 1030, 1267, 1313
FriOI GRGCYC 1 cut(s) 1467
Fsp4HI GCNGC 2 cut(s) 564, 1481
FspBI CTAG 5 cut(s) 405, 744, 870, 1088, 1200
GlaI GCGC 3 cut(s) 231, 233, 1149
GluI GCNGC 2 cut(s) 564, 1481
HaeIII GGCC 2 cut(s) 279, 292
HapII CCGG 1 cut(s) 956
HgaI GACGC 1 cut(s) 256
HhaI GCGC 3 cut(s) 232, 234, 1150
Hin1I GRCGYC 2 cut(s) 5, 267
Hin1II CATG 5 cut(s) 433, 597, 624, 1012, 1224
Hin6I GCGC 3 cut(s) 230, 232, 1148
HinP1I GCGC 3 cut(s) 230, 232, 1148
HindIII AAGCTT 1 cut(s) 767
HpaII CCGG 1 cut(s) 956
HphI GGTGA 4 cut(s) 533, 1135, 1198, 1400
Hpy166II GTNNAC 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 63, 352, 575, 732, 1170
HpyCH4III ACNGT 7 cut(s) 313, 329, 478, 646, 968, 1047, 1263
HpyCH4IV ACGT 2 cut(s) 300, 908
HpyCH4V TGCA 4 cut(s) 563, 1050, 1408, 1483
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 998, 1471, 1480
HpyF3I CTNAG 3 cut(s) 369, 1307, 1379
HpySE526I ACGT 2 cut(s) 300, 908
Hsp92I GRCGYC 2 cut(s) 5, 267
Hsp92II CATG 5 cut(s) 433, 597, 624, 1012, 1224
HspAI GCGC 3 cut(s) 230, 232, 1148
Ksp22I TGATCA 1 cut(s) 27
LguI GCTCTTC 2 cut(s) 657, 1429
LmnI GCTCC 2 cut(s) 601, 1084
Lsp1109I GCAGC 2 cut(s) 575, 1467
MaeI CTAG 5 cut(s) 405, 744, 870, 1088, 1200
MaeII ACGT 2 cut(s) 300, 908
MaeIII GTNAC 5 cut(s) 329, 337, 649, 688, 934
MauBI CGCGCGCG 1 cut(s) 230
MflI RGATCY 3 cut(s) 1107, 1179, 1274
MhlI GDGCHC 3 cut(s) 198, 976, 1467
MluCI AATT 2 cut(s) 400, 836
MlyI GAGTC 4 cut(s) 148, 163, 345, 1299
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 3 cut(s) 93, 303, 834
MslI CAYNNNNRTG 1 cut(s) 944
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 2 cut(s) 294, 957
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 5 cut(s) 204, 230, 232, 234, 1148
MwoI GCNNNNNNNGC 4 cut(s) 236, 998, 1471, 1480
NciI CCSGG 1 cut(s) 957
NcoI CCATGG 1 cut(s) 620
NheI GCTAGC 1 cut(s) 1087
NlaIII CATG 5 cut(s) 433, 597, 624, 1012, 1224
NmeAIII GCCGAG 2 cut(s) 787, 1456
NmuCI GTSAC 4 cut(s) 337, 649, 688, 934
NspI RCATGY 1 cut(s) 1012
NspV TTCGAA 1 cut(s) 764
PaeR7I CTCGAG 1 cut(s) 1270
PauI GCGCGC 1 cut(s) 230
PciSI GCTCTTC 2 cut(s) 657, 1429
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 7 cut(s) 78, 149, 683, 697, 1093, 1189, 1351
PflFI GACNNNGTC 1 cut(s) 1327
PkrI GCNGC 2 cut(s) 565, 1482
PleI GAGTC 4 cut(s) 148, 163, 344, 1299
PpsI GAGTC 4 cut(s) 148, 163, 344, 1299
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 1 cut(s) 290
PstI CTGCAG 2 cut(s) 565, 1485
PsuI RGATCY 3 cut(s) 1107, 1179, 1274
PsyI GACNNNGTC 1 cut(s) 1327
PteI GCGCGC 1 cut(s) 230
RsaI GTAC 2 cut(s) 618, 1121
RsaNI GTAC 2 cut(s) 617, 1120
RseI CAYNNNNRTG 1 cut(s) 944
SapI GCTCTTC 2 cut(s) 657, 1429
SaqAI TTAA 3 cut(s) 93, 303, 834
SatI GCNGC 2 cut(s) 564, 1481
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 4 cut(s) 148, 163, 345, 1299
ScrFI CCNGG 2 cut(s) 294, 957
SduI GDGCHC 3 cut(s) 198, 976, 1467
SfcI CTRYAG 2 cut(s) 561, 1481
Sfr274I CTCGAG 1 cut(s) 1270
SfuI TTCGAA 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 1270
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 3 cut(s) 503, 551, 1270
SmoI CTYRAG 3 cut(s) 503, 551, 1270
Sse9I AATT 2 cut(s) 400, 836
SsiI CCGC 7 cut(s) 105, 125, 137, 202, 1073, 1146, 1208
SspMI CTAG 5 cut(s) 405, 744, 870, 1088, 1200
StyD4I CCNGG 2 cut(s) 292, 955
StyI CCWWGG 2 cut(s) 212, 620
TaaI ACNGT 7 cut(s) 313, 329, 478, 646, 968, 1047, 1263
TaiI ACGT 2 cut(s) 303, 911
TaqI TCGA 6 cut(s) 152, 177, 725, 764, 898, 1271
TasI AATT 2 cut(s) 400, 836
TatI WGTACW 1 cut(s) 1119
TfiI GAWTC 7 cut(s) 78, 149, 683, 697, 1093, 1189, 1351
Tru1I TTAA 3 cut(s) 93, 303, 834
Tru9I TTAA 3 cut(s) 93, 303, 834
TscAI CASTG 2 cut(s) 781, 1057
TseFI GTSAC 4 cut(s) 337, 649, 688, 934
TseI GCWGC 2 cut(s) 563, 1480
Tsp45I GTSAC 4 cut(s) 337, 649, 688, 934
TspGWI ACGGA 2 cut(s) 60, 266
TspRI CASTG 2 cut(s) 781, 1057
Tth111I GACNNNGTC 1 cut(s) 1327
XapI RAATTY 1 cut(s) 400
XbaI TCTAGA 2 cut(s) 404, 869
XceI RCATGY 1 cut(s) 1012
XhoI CTCGAG 1 cut(s) 1270
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 5 cut(s) 405, 744, 870, 1088, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.