Rorug05G0344800

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012131
Physical Location & Seq
Reverse (-)
42459178 .. 42467564
8387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0344800.1

Sequence Viewer

Length: 1305 bp
ATGGGTGTCTCGGGTAAATGGATTAAGGCATTGGTTGGCTTGAAAAAATCAGAAAAGTCGCAATCTTCAGTGACAGATGACAATAGAACAACTGCTAACAGGTTTCGGCACAGGAGAAAGCATTCCGTTGAAATTGATTCAGATAGACTGCAATACGAGTTTGATGCCAATGCTGCTCCACCAATTGGACATCCTCAATTAAACCCAGATGTTGTGGATTCTCCTTCTAGTTCACTCGAAGTACAGAATGCACAGAGTGAGCAGAATGTGAGAGAAGAGTGGGCGGCTACATGCATCCAAACAGCTTTTCGTGGCTTTCTGGCCAGAAGAGCACTTCGGGCTTTAAAAGGATTAGTAAGACTTCAAGCTCTTGTCAGAGGCCATGCTGTGAGGAAGCAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTTCAGGCTCGTGTGAGAGCAAGGCGTGTTCGTCTGGCATTGGAAGGTGAAACGACAGAAGAGAGACTACAGCAACAACTTACTAATGAGGCTCGTGTCCGAGAAATAGAAGAAGGATGGTGTGACAGTGTAGGATCCGTTCAAGAAATTCAGGCCAAGTTGTTGAAGCGGCAAGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCACTTGCTCATCAGTGGCAAGCTGGAACAAGACAGCAGCATGCTCCCTCTGGGTTCGAACCAGATAAAAACAGCTGGGGATGGAACTGGTTAGAAAGATGGATGGCTGTCCGTCCCTGGGAGAACCGCTTTCTAGATATTAATCTTAGAGATGGAGTAATGGTAGATGAGAATGAATCAACAGAGGCCAAGGATGGCAGCAGATCAGGGTTAAAATCTGCTGGCAAGAAACCTATTGCTTCAACTGTTCAATCGAATCTTGTAAGTCAAAAAGCTGTACCCTTTCATTCCAATGGGTGTGATTCTTCACCCAGCAAGTCGGCAGGTGTGCTAGAGGCATCCAACACCCAACTTGGAAAGCCAAATTCCAAGCCCTGTTTGGATGATTCAATTGAAAGAGGAAACTTGAAACCTGATATTGCATCAAGATCCCATAGTAATCCAAAAGAGAGAACAACAGGATTGAATAAACAGGCGAAGAAGCGGTTGTCTCTGCCTAGCAATGGAGGTCTTAGTGGTCAAACTGCCAGACATCCTATTAGATCTAATGTCAAAGGGACACCCAGTTCTCAGAAGCTCGTCAAGGCTAGATCAAAACCCAGTGGGAAAGGTGACTCTTCAAAGTCATCCCCGCAAGCCGTTGATATGCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

48.01

Weight (kDa)

10.12

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60050
fragaria_vesca FvH4_3g34280
malus_domestica MD03G1106900.v1.1 MD11G1119600.v1.1
prunus_persica Prupe.6G089700_v2.0.a1
pyrus_communis pycom03g08630 pycom11g10090
rosa_chinensis RchiOBHm_Chr5g0061841 RchiOBHm_Chr5g0061851
rosa_laevigata RLG00000035510
rosa_multiflora Rmu_sc0004134.1_g000002 Rmu_sc0011641.1_g000016
rosa_roxburghii Rroxscaffold_1G00018890
rosa_rugosa Rorug05G0344800
rosa_samantha Rh5AG405400 Rh5BG418200 Rh5CG442700 Rh5DG432300
rosa_wichuraiana Rw5G038060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 962
Acc36I ACCTGC 1 cut(s) 962
AccB7I CCANNNNNTGG 1 cut(s) 185
AciI CCGC 5 cut(s) 284, 607, 775, 1132, 1280
AclWI GGATC 3 cut(s) 567, 580, 1071
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 585, 1012
AcuI CTGAAG 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 2 cut(s) 243, 927
AfiI CCNNNNNNNGG 3 cut(s) 185, 766, 1151
AjnI CCWGG 1 cut(s) 764
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AloI GAACNNNNNNTCC 2 cut(s) 1198, 1230
AluBI AGCT 9 cut(s) 305, 368, 401, 428, 623, 671, 723, 923, 1225
AluI AGCT 9 cut(s) 305, 368, 401, 428, 623, 671, 723, 923, 1225
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 13, 496, 1143
AlwI GGATC 3 cut(s) 567, 580, 1071
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 4 cut(s) 321, 379, 591, 834
ApeKI GCWGC 6 cut(s) 173, 401, 617, 620, 685, 846
ApoI RAATTY 2 cut(s) 585, 1012
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 497, 948, 1271
AsuII TTCGAA 1 cut(s) 705
AvaI CYCGRG 1 cut(s) 10
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BauI CACGAG 2 cut(s) 447, 531
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BccI CCATC 6 cut(s) 549, 723, 741, 745, 794, 836
BceAI ACGGC 1 cut(s) 1271
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 766
BcoDI GTCTC 3 cut(s) 13, 496, 1143
BfaI CTAG 5 cut(s) 228, 782, 980, 1146, 1236
BfmI CTRYAG 2 cut(s) 506, 618
BfuAI ACCTGC 1 cut(s) 962
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 8 cut(s) 174, 285, 402, 608, 618, 621, 686, 847
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 8 cut(s) 175, 286, 403, 609, 619, 622, 687, 848
Bme1390I CCNGG 1 cut(s) 766
BmeT110I CYCGRG 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 766
BmrI ACTGGG 2 cut(s) 1206, 1242
BmsI GCATC 4 cut(s) 154, 303, 995, 1079
BmuI ACTGGG 2 cut(s) 1206, 1242
Bpu1102I GCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 705
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 4 cut(s) 639, 764, 765, 837
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 766, 1151
Bse1I ACTGG 3 cut(s) 740, 1212, 1248
Bse3DI GCAATG 1 cut(s) 1156
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 4 cut(s) 639, 764, 765, 837
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 185, 766, 1151
BseMI GCAATG 1 cut(s) 1156
BseMII CTCAG 1 cut(s) 1232
BseNI ACTGG 3 cut(s) 740, 1212, 1248
BseXI GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BseYI CCCAGC 2 cut(s) 723, 959
BshFI GGCC 4 cut(s) 323, 381, 593, 836
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 747, 1219
BslI CCNNNNNNNGG 3 cut(s) 185, 766, 1151
BsmAI GTCTC 3 cut(s) 13, 496, 1143
BsmFI GGGAC 2 cut(s) 747, 1219
BsmI GAATGC 2 cut(s) 121, 253
BsnI GGCC 4 cut(s) 323, 381, 593, 836
BsoBI CYCGRG 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 5 cut(s) 572, 851, 1076, 1190, 1238
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 5 cut(s) 284, 607, 775, 1132, 1280
BspANI GGCC 4 cut(s) 323, 381, 593, 836
BspCNI CTCAG 1 cut(s) 1231
BspLI GGNNCC 1 cut(s) 574
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 962
BspPI GGATC 3 cut(s) 567, 580, 1071
BspQI GCTCTTC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 1156
BsrI ACTGG 3 cut(s) 740, 1212, 1248
BssECI CCNNGG 4 cut(s) 639, 764, 765, 837
BssMI GATC 5 cut(s) 572, 851, 1076, 1190, 1238
BssSI CACGAG 2 cut(s) 447, 531
BssT1I CCWWGG 2 cut(s) 639, 837
Bst2BI CACGAG 2 cut(s) 447, 531
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 2 cut(s) 566, 895
Bst6I CTCTTC 5 cut(s) 270, 322, 417, 492, 1270
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 6 cut(s) 399, 426, 669, 690, 871, 1284
BstDEI CTNAG 4 cut(s) 624, 794, 1160, 1218
BstDSI CCRYGG 1 cut(s) 639
BstKTI GATC 5 cut(s) 575, 854, 1079, 1193, 1241
BstMAI GTCTC 3 cut(s) 13, 496, 1143
BstMBI GATC 5 cut(s) 572, 851, 1076, 1190, 1238
BstMWI GCNNNNNNNGC 3 cut(s) 173, 329, 338
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 2 cut(s) 294, 692
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 2 cut(s) 506, 618
BstV1I GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
BstX2I RGATCY 3 cut(s) 572, 1076, 1190
BstYI RGATCY 3 cut(s) 572, 1076, 1190
BsuRI GGCC 4 cut(s) 323, 381, 593, 836
BtgI CCRYGG 1 cut(s) 639
BtsIMutI CAGTG 4 cut(s) 75, 571, 668, 1255
BveI ACCTGC 1 cut(s) 962
Cac8I GCNNGC 6 cut(s) 399, 426, 669, 690, 871, 1284
Csp6I GTAC 2 cut(s) 242, 926
CviAII CATG 4 cut(s) 291, 383, 640, 689
CviQI GTAC 2 cut(s) 242, 926
DdeI CTNAG 4 cut(s) 624, 794, 1160, 1218
DpnI GATC 5 cut(s) 574, 853, 1078, 1192, 1240
DpnII GATC 5 cut(s) 572, 851, 1076, 1190, 1238
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 5 cut(s) 270, 322, 417, 492, 1270
EarI CTCTTC 5 cut(s) 270, 322, 417, 492, 1270
Eco130I CCWWGG 2 cut(s) 639, 837
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 639, 837
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 639, 837
FaeI CATG 4 cut(s) 294, 386, 643, 692
FaiI YATR 9 cut(s) 292, 384, 422, 641, 646, 648, 690, 1083, 1295
FaqI GGGAC 2 cut(s) 747, 1219
FatI CATG 4 cut(s) 290, 382, 639, 688
FauI CCCGC 1 cut(s) 1287
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 8 cut(s) 174, 285, 402, 608, 618, 621, 686, 847
Fsp4HI GCNGC 8 cut(s) 174, 285, 402, 608, 618, 621, 686, 847
FspBI CTAG 5 cut(s) 228, 782, 980, 1146, 1236
GluI GCNGC 8 cut(s) 174, 285, 402, 608, 618, 621, 686, 847
GsaI CCCAGC 2 cut(s) 727, 963
HaeIII GGCC 4 cut(s) 323, 381, 593, 836
Hin1II CATG 4 cut(s) 294, 386, 643, 692
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 7 cut(s) 137, 218, 824, 904, 950, 1034, 1262
HphI GGTGA 3 cut(s) 497, 948, 1271
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 5 cut(s) 52, 142, 377, 539, 1221
Hpy188III TCNNGA 3 cut(s) 581, 782, 1074
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 234, 476, 545
HpyCH4III ACNGT 2 cut(s) 566, 895
HpyCH4V TGCA 9 cut(s) 151, 251, 294, 404, 424, 620, 650, 1070, 1297
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 329, 338
HpyF3I CTNAG 4 cut(s) 624, 794, 1160, 1218
Hsp92II CATG 4 cut(s) 294, 386, 643, 692
Kzo9I GATC 5 cut(s) 572, 851, 1076, 1190, 1238
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 181, 697
Lsp1109I GCAGC 6 cut(s) 160, 388, 604, 632, 697, 858
LweI GCATC 4 cut(s) 154, 303, 995, 1079
MaeI CTAG 5 cut(s) 228, 782, 980, 1146, 1236
MaeIII GTNAC 3 cut(s) 70, 560, 1259
MalI GATC 5 cut(s) 574, 853, 1078, 1192, 1240
MboI GATC 5 cut(s) 572, 851, 1076, 1190, 1238
MboII GAAGA 9 cut(s) 57, 287, 339, 404, 509, 560, 945, 1138, 1257
MfeI CAATTG 2 cut(s) 183, 1038
MflI RGATCY 3 cut(s) 572, 1076, 1190
MhlI GDGCHC 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 6 cut(s) 132, 183, 197, 585, 1012, 1038
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 1256
MmeI TCCRAC 1 cut(s) 1014
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 323
MseI TTAA 6 cut(s) 24, 200, 344, 789, 860, 1303
MslI CAYNNNNRTG 1 cut(s) 939
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 723
MspR9I CCNGG 1 cut(s) 766
MunI CAATTG 2 cut(s) 183, 1038
Mva1269I GAATGC 2 cut(s) 121, 253
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 3 cut(s) 173, 329, 338
NcoI CCATGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 646
NdeII GATC 5 cut(s) 572, 851, 1076, 1190, 1238
NlaIII CATG 4 cut(s) 294, 386, 643, 692
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 3 cut(s) 70, 560, 1259
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 2 cut(s) 294, 692
NspV TTCGAA 1 cut(s) 705
PaeI GCATGC 1 cut(s) 692
PaqCI CACCTGC 1 cut(s) 962
PasI CCCWGGG 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 322
PctI GAATGC 2 cut(s) 121, 253
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 6 cut(s) 137, 218, 824, 904, 950, 1034
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 8 cut(s) 175, 286, 403, 609, 619, 622, 687, 848
PleI GAGTC 1 cut(s) 1256
PpsI GAGTC 1 cut(s) 1256
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 764
PspFI CCCAGC 2 cut(s) 723, 959
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 1 cut(s) 574
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 3 cut(s) 572, 1076, 1190
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 2 cut(s) 243, 927
RsaNI GTAC 2 cut(s) 242, 926
RseI CAYNNNNRTG 1 cut(s) 939
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 6 cut(s) 24, 200, 344, 789, 860, 1303
SatI GCNGC 8 cut(s) 174, 285, 402, 608, 618, 621, 686, 847
Sau3AI GATC 5 cut(s) 572, 851, 1076, 1190, 1238
SchI GAGTC 1 cut(s) 1256
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 4 cut(s) 154, 303, 995, 1079
SfcI CTRYAG 2 cut(s) 506, 618
SfuI TTCGAA 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 939
SphI GCATGC 1 cut(s) 692
Sse9I AATT 6 cut(s) 132, 183, 197, 585, 1012, 1038
SsiI CCGC 5 cut(s) 284, 607, 775, 1132, 1280
SspMI CTAG 5 cut(s) 228, 782, 980, 1146, 1236
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 2 cut(s) 639, 837
TaaI ACNGT 2 cut(s) 566, 895
TaqI TCGA 3 cut(s) 237, 705, 902
TasI AATT 6 cut(s) 132, 183, 197, 585, 1012, 1038
TatI WGTACW 1 cut(s) 241
TauI GCSGC 2 cut(s) 287, 610
TfiI GAWTC 6 cut(s) 137, 218, 824, 904, 950, 1034
Tru1I TTAA 6 cut(s) 24, 200, 344, 789, 860, 1303
Tru9I TTAA 6 cut(s) 24, 200, 344, 789, 860, 1303
TscAI CASTG 4 cut(s) 75, 571, 668, 1255
TseFI GTSAC 3 cut(s) 70, 560, 1259
TseI GCWGC 6 cut(s) 173, 401, 617, 620, 685, 846
Tsp45I GTSAC 3 cut(s) 70, 560, 1259
TspDTI ATGAA 2 cut(s) 837, 923
TspGWI ACGGA 3 cut(s) 115, 565, 749
TspRI CASTG 4 cut(s) 75, 571, 668, 1255
Van91I CCANNNNNTGG 1 cut(s) 185
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 585, 1012
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 2 cut(s) 294, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 1024
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 5 cut(s) 228, 782, 980, 1146, 1236
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.