RchiOBHm_Chr5g0061841

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012131
Physical Location & Seq
Forward (+)
67462528 .. 67463220
693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33818

Sequence Viewer

Length: 345 bp
ATGGCGGCCGAGAACGCACTGAAATCCAAAGAGGTCTCGGCGATGATCAAACAGGGCTTCATTTCCGATCAAACCCTCTCGTTCTCGCCGTCAAGACCCACCAATTCCAAGCTCCACTCCCCCAACTCCAAAACCCTATCCTCTCCTCCCTTCTCCCCCGCCGCGGCGCCGACTCAGCAATTGACTCGGCCGAGTCAGTCCCAGACCCTGTACGAGATGATGTCCGACGAGCAGCACCGGGATTCCAAGCACTCGGACCGGAATCTCCACCAGAAAGTCCACAAGCTCCTCGAAACGGCGCCGTTTCGGAACCCCAATTGGGGGGGCTGGTTTCTGGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.81

Weight (kDa)

9.69

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60050
fragaria_vesca FvH4_3g34280
malus_domestica MD03G1106900.v1.1 MD11G1119600.v1.1
prunus_persica Prupe.6G089700_v2.0.a1
pyrus_communis pycom03g08630 pycom11g10090
rosa_chinensis RchiOBHm_Chr5g0061841 RchiOBHm_Chr5g0061851
rosa_laevigata RLG00000035510
rosa_multiflora Rmu_sc0004134.1_g000002 Rmu_sc0011641.1_g000016
rosa_roxburghii Rroxscaffold_1G00018890
rosa_rugosa Rorug05G0344800
rosa_samantha Rh5AG405400 Rh5BG418200 Rh5CG442700 Rh5DG432300
rosa_wichuraiana Rw5G038060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 166, 298
AccII CGCG 1 cut(s) 164
AciI CCGC 4 cut(s) 5, 159, 162, 164
AcoI YGGCCR 2 cut(s) 6, 188
AcyI GRCGYC 2 cut(s) 167, 299
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 5 cut(s) 163, 295, 319, 320, 321
AluBI AGCT 2 cut(s) 112, 286
AluI AGCT 2 cut(s) 112, 286
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 2 cut(s) 6, 188
ApeKI GCWGC 1 cut(s) 232
AspLEI GCGC 2 cut(s) 169, 301
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 166, 298
BbvI GCAGC 1 cut(s) 244
BceAI ACGGC 3 cut(s) 73, 286, 312
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 40
BfoI RGCGCY 2 cut(s) 170, 302
BisI GCNGC 4 cut(s) 6, 162, 165, 233
BlsI GCNGC 4 cut(s) 7, 163, 166, 234
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 168, 300, 311
BmrFI CCNGG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 167, 299
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 295, 319, 320, 321
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 5 cut(s) 163, 295, 319, 320, 321
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 135, 278
BseX3I CGGCCG 2 cut(s) 6, 188
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 164
Bsh1285I CGRYCG 2 cut(s) 9, 191
BshFI GGCC 2 cut(s) 8, 190
BshNI GGYRCC 2 cut(s) 166, 298
BsiEI CGRYCG 2 cut(s) 9, 191
BsiSI CCGG 2 cut(s) 238, 259
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 5 cut(s) 163, 295, 319, 320, 321
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 2 cut(s) 8, 190
Bso31I GGTCTC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 45, 67
BspACI CCGC 4 cut(s) 5, 159, 162, 164
BspANI GGCC 2 cut(s) 8, 190
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 3 cut(s) 168, 300, 311
BspT107I GGYRCC 2 cut(s) 166, 298
BspTNI GGTCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 45, 67
BssNI GRCGYC 2 cut(s) 167, 299
BstACI GRCGYC 2 cut(s) 167, 299
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 2 cut(s) 170, 302
BstHHI GCGC 2 cut(s) 169, 301
BstKTI GATC 2 cut(s) 48, 70
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 45, 67
BstMCI CGRYCG 2 cut(s) 9, 191
BstMWI GCNNNNNNNGC 2 cut(s) 14, 175
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 244
BstZI CGGCCG 2 cut(s) 6, 188
BsuRI GGCC 2 cut(s) 8, 190
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 2 cut(s) 169, 301
Cfr13I GGNCC 1 cut(s) 256
Cfr42I CCGCGG 1 cut(s) 165
CpoI CGGWCCG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 211
CspI CGGWCCG 1 cut(s) 256
CviJI RGCY 6 cut(s) 8, 57, 112, 190, 286, 327
CviKI_1 RGCY 6 cut(s) 8, 57, 112, 190, 286, 327
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 174
DinI GGCGCC 2 cut(s) 168, 300
DpnI GATC 2 cut(s) 47, 69
DpnII GATC 2 cut(s) 45, 67
EaeI YGGCCR 2 cut(s) 6, 188
EagI CGGCCG 2 cut(s) 6, 188
EclXI CGGCCG 2 cut(s) 6, 188
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 256
Eco52I CGGCCG 2 cut(s) 6, 188
EgeI GGCGCC 2 cut(s) 168, 300
EheI GGCGCC 2 cut(s) 168, 300
FaqI GGGAC 1 cut(s) 184
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 6, 162, 165, 233
Fsp4HI GCNGC 4 cut(s) 6, 162, 165, 233
GlaI GCGC 2 cut(s) 168, 300
GluI GCNGC 4 cut(s) 6, 162, 165, 233
HaeII RGCGCY 2 cut(s) 170, 302
HaeIII GGCC 2 cut(s) 8, 190
HapII CCGG 2 cut(s) 238, 259
HhaI GCGC 2 cut(s) 169, 301
Hin1I GRCGYC 2 cut(s) 167, 299
Hin6I GCGC 2 cut(s) 167, 299
HinP1I GCGC 2 cut(s) 167, 299
HinfI GANTC 5 cut(s) 172, 184, 193, 242, 262
HpaII CCGG 2 cut(s) 238, 259
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 67, 226, 256, 309
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 175
HpyF3I CTNAG 1 cut(s) 174
Hsp92I GRCGYC 2 cut(s) 167, 299
HspAI GCGC 2 cut(s) 167, 299
KasI GGCGCC 2 cut(s) 166, 298
Ksp22I TGATCA 1 cut(s) 45
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 2 cut(s) 45, 67
LmnI GCTCC 2 cut(s) 117, 291
LpnPI CCDG 8 cut(s) 38, 215, 221, 251, 272, 284, 313, 320
Lsp1109I GCAGC 1 cut(s) 244
MalI GATC 2 cut(s) 47, 69
MboI GATC 2 cut(s) 45, 67
MfeI CAATTG 2 cut(s) 179, 316
MluCI AATT 3 cut(s) 103, 179, 316
Mly113I GGCGCC 2 cut(s) 167, 299
MlyI GAGTC 3 cut(s) 166, 178, 202
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 25, 86, 151, 156, 299
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 238, 259
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 2 cut(s) 179, 316
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 14, 175
NarI GGCGCC 2 cut(s) 167, 299
NciI CCSGG 1 cut(s) 239
NdeII GATC 2 cut(s) 45, 67
NlaIV GGNNCC 3 cut(s) 168, 300, 311
NmeAIII GCCGAG 4 cut(s) 17, 34, 166, 216
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 2 cut(s) 242, 262
PkrI GCNGC 4 cut(s) 7, 163, 166, 234
PleI GAGTC 3 cut(s) 166, 178, 201
PluTI GGCGCC 2 cut(s) 170, 302
PpsI GAGTC 3 cut(s) 166, 178, 201
PspN4I GGNNCC 3 cut(s) 168, 300, 311
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
Rsr2I CGGWCCG 1 cut(s) 256
RsrII CGGWCCG 1 cut(s) 256
SacII CCGCGG 1 cut(s) 165
SatI GCNGC 4 cut(s) 6, 162, 165, 233
Sau3AI GATC 2 cut(s) 45, 67
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 3 cut(s) 166, 178, 202
ScrFI CCNGG 1 cut(s) 239
SetI ASST 3 cut(s) 36, 114, 288
SfoI GGCGCC 2 cut(s) 168, 300
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 1 cut(s) 256
Sse9I AATT 3 cut(s) 103, 179, 316
SsiI CCGC 4 cut(s) 5, 159, 162, 164
SspDI GGCGCC 2 cut(s) 166, 298
StyD4I CCNGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 103, 179, 316
TauI GCSGC 3 cut(s) 8, 164, 167
TfiI GAWTC 2 cut(s) 242, 262
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.