Rh5AG405400

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012131
Physical Location & Seq
Forward (+)
70204259 .. 70206052
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG405400.1

Sequence Viewer

Length: 1158 bp
ATGGATGTGCACAAGAGTGTTCTGGCTTCGAAAAGCCGGTTTTTCGCCGAAAAGCTTAGGAAAGATAGAGGGGTTTCACATTGTGTGGAGATTTCTGACTGTGATGATGTGGAGGTGTATGTGGAAACTGTGGTGTTGATGTACTGTGAGGATTTGAAGAAGAGGTTGATGGGTGAGGAGGTCTCCAGGGTTTTGGGTTTGCTAAAGGTCTCTGCGGCTCTCATGTTTGATGAGGGCATTGCCTCATGCTTGGAGTATTTGGAAGCGGTTCCGTGGTCCGAGGAGGAAGAGGAGAAAGTTAAATCTCAACTCGGTGAACTTCAGCTTCATGACTCGGCCAGTGATCAAGTTTTGCTCAGAGTATCCTCTGAACCATCCACGTCTGCTAGAGCTGATGAAATCTTATCGAGACTGCTCACTGGTGTTCTTCAAGCGAAAGATGATAGAGCTCGTCGAGAAATGAAGACTCTCATTTCCAGGTTACTTAGAGAAGATGCAGCGAATGACGGCAATAGGCTTGATGTGTCTAAAGAAACCCTTTACAATCTTTGCCATAGATGCTTGAGTTCCCTTGTACTGTGCTTATCCGAAGCTACAGGCATGGATGAAAAGCGGGATCGCGGGGTATTGATGGCTGAGATAGCAAGAGAGGCTGATAACATGCAGTGGATTGTTGATATTATGGTAGACAAGAAAATGGGTGAAGATTTTGTGAAATTATGGGCGGATCAGAAGGAGCTTGCAGTCCTCCACTCAAAGATTCCGATCATGTACCGACATGAAATCAGCAGAATCACAGCTCAGCTATGCATCGCGATTGGGAGTAGACATTTGCTGGTGCCCAAAGACACAAGATTTTCTTTGCTTTCGACATGGCTGGAAGCTCTTTATGAGGACTTCGGATGGATGAGGAGGGCTTCGAGATCTGTTGACAAGAAACTTGTTGAAGAGGGTCTAAGCCAAACGATTCTTACACTTCCTTTGCATCAACAACAGGCTATAATGCTTAATTGGTTTGACCGGTTTCTAAACAAGGGAGATGACTGTCCCAACATTCAGAAGGCGTTTGAAGTTTGGTGGAGGAGAGCTTTCATCAAACATGTGGCAGAGCAGGAAAATCATAGGTTGCAAATAACTGTTTGTGATTATCCCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

44.23

Weight (kDa)

5.53

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 132 - 366 1.1e-71 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60050
fragaria_vesca FvH4_3g34280
malus_domestica MD03G1106900.v1.1 MD11G1119600.v1.1
prunus_persica Prupe.6G089700_v2.0.a1
pyrus_communis pycom03g08630 pycom11g10090
rosa_chinensis RchiOBHm_Chr5g0061841 RchiOBHm_Chr5g0061851
rosa_laevigata RLG00000035510
rosa_multiflora Rmu_sc0004134.1_g000002 Rmu_sc0011641.1_g000016
rosa_roxburghii Rroxscaffold_1G00018890
rosa_rugosa Rorug05G0344800
rosa_samantha Rh5AG405400 Rh5BG418200 Rh5CG442700 Rh5DG432300
rosa_wichuraiana Rw5G038060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AccI GTMKAC 2 cut(s) 687, 826
AccII CGCG 2 cut(s) 621, 815
AciI CCGC 5 cut(s) 215, 266, 613, 621, 725
AclWI GGATC 2 cut(s) 624, 735
AcoI YGGCCR 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 3 cut(s) 143, 576, 773
AflIII ACRYGT 1 cut(s) 1099
AgeI ACCGGT 1 cut(s) 1020
AgsI TTSAA 4 cut(s) 157, 431, 947, 1070
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 2 cut(s) 185, 476
AleI CACNNNNGTG 1 cut(s) 15
Alw21I GWGCWC 2 cut(s) 12, 451
Alw26I GTCTC 3 cut(s) 187, 214, 403
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 2 cut(s) 624, 735
AoxI GGCC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 497
AsiGI ACCGGT 1 cut(s) 1020
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 1152
AsuHPI GGTGA 3 cut(s) 185, 326, 713
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 276
BaeGI GKGCMC 2 cut(s) 12, 843
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 12, 451
BbvI GCAGC 1 cut(s) 509
BccI CCATC 4 cut(s) 163, 382, 625, 897
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 2 cut(s) 187, 478
BciVI GTATCC 1 cut(s) 373
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 1152
BcoDI GTCTC 3 cut(s) 187, 214, 403
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 594
BfuI GTATCC 1 cut(s) 373
BglII AGATCT 1 cut(s) 923
BisI GCNGC 2 cut(s) 216, 498
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 2 cut(s) 217, 499
Bme1390I CCNGG 3 cut(s) 187, 478, 1152
Bme18I GGWCC 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 270, 840
BmrFI CCNGG 3 cut(s) 187, 478, 1152
BmsI GCATC 4 cut(s) 484, 548, 819, 994
BpiI GAAGAC 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 583
BpuMI CCSGG 1 cut(s) 1152
BsaBI GATNNNNATC 1 cut(s) 764
BsaI GGTCTC 2 cut(s) 187, 214
BsaJI CCNNGG 3 cut(s) 186, 272, 279
BsaWI WCCGGW 1 cut(s) 1020
Bse118I RCCGGY 2 cut(s) 36, 1020
Bse1I ACTGG 2 cut(s) 339, 424
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 764
BseBI CCWGG 2 cut(s) 187, 478
BseDI CCNNGG 3 cut(s) 186, 272, 279
BseGI GGATG 5 cut(s) 10, 374, 610, 908, 912
BseJI GATNNNNATC 1 cut(s) 764
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 3 cut(s) 370, 627, 815
BseNI ACTGG 2 cut(s) 339, 424
BseRI GAGGAG 5 cut(s) 191, 296, 305, 925, 1096
BseSI GKGCMC 2 cut(s) 12, 843
BseXI GCAGC 1 cut(s) 509
Bsh1236I CGCG 2 cut(s) 621, 815
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 12, 451
BsiSI CCGG 3 cut(s) 37, 1021, 1152
BslFI GGGAC 1 cut(s) 1032
BsmAI GTCTC 3 cut(s) 187, 214, 403
BsmFI GGGAC 1 cut(s) 1032
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 2 cut(s) 187, 214
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 12, 451, 843
Bsp143I GATC 5 cut(s) 343, 616, 727, 765, 923
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp68I TCGCGA 1 cut(s) 815
BspACI CCGC 5 cut(s) 215, 266, 613, 621, 725
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 3 cut(s) 369, 628, 814
BspFNI CGCG 2 cut(s) 621, 815
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 270, 840
BspPI GGATC 2 cut(s) 624, 735
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 2 cut(s) 187, 214
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 2 cut(s) 36, 1020
BsrI ACTGG 2 cut(s) 339, 424
BssAI RCCGGY 2 cut(s) 36, 1020
BssECI CCNNGG 3 cut(s) 186, 272, 279
BssMI GATC 5 cut(s) 343, 616, 727, 765, 923
Bst2UI CCWGG 2 cut(s) 187, 478
Bst4CI ACNGT 6 cut(s) 101, 130, 146, 579, 1046, 1138
Bst6I CTCTTC 3 cut(s) 155, 282, 942
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 6 cut(s) 56, 356, 485, 636, 801, 956
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 5 cut(s) 10, 374, 610, 908, 912
BstFNI CGCG 2 cut(s) 621, 815
BstKTI GATC 5 cut(s) 346, 619, 730, 768, 926
BstMAI GTCTC 3 cut(s) 187, 214, 403
BstMBI GATC 5 cut(s) 343, 616, 727, 765, 923
BstMWI GCNNNNNNNGC 3 cut(s) 558, 641, 650
BstNI CCWGG 2 cut(s) 187, 478
BstNSI RCATGY 2 cut(s) 664, 1103
BstSCI CCNGG 3 cut(s) 185, 476, 1150
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 2 cut(s) 12, 843
BstUI CGCG 2 cut(s) 621, 815
BstV1I GCAGC 1 cut(s) 509
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 923
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 923
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 796
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 5 cut(s) 10, 374, 610, 908, 912
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 3 cut(s) 346, 417, 671
BtuMI TCGCGA 1 cut(s) 815
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 2 cut(s) 36, 1020
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 3 cut(s) 142, 575, 772
CspAI ACCGGT 1 cut(s) 1020
CviAII CATG 9 cut(s) 223, 246, 329, 601, 661, 769, 779, 873, 1100
CviQI GTAC 3 cut(s) 142, 575, 772
DdeI CTNAG 6 cut(s) 56, 356, 485, 636, 801, 956
DpnI GATC 5 cut(s) 345, 618, 729, 767, 925
DpnII GATC 5 cut(s) 343, 616, 727, 765, 923
DraIII CACNNNGTG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 3 cut(s) 155, 282, 942
EarI CTCTTC 3 cut(s) 155, 282, 942
EciI GGCGGA 1 cut(s) 740
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 2 cut(s) 187, 214
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 185, 476
EcoT22I ATGCAT 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 9 cut(s) 226, 249, 332, 604, 664, 772, 782, 876, 1103
FalI AAGNNNNNCTT 4 cut(s) 522, 554, 844, 876
FaqI GGGAC 1 cut(s) 1032
FatI CATG 9 cut(s) 222, 245, 328, 600, 660, 768, 778, 872, 1099
FauI CCCGC 2 cut(s) 606, 614
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 2 cut(s) 687, 826
Fnu4HI GCNGC 2 cut(s) 216, 498
FokI GGATG 5 cut(s) 17, 361, 617, 915, 919
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 216, 498
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 216, 498
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 338
HapII CCGG 3 cut(s) 37, 1021, 1152
Hin1II CATG 9 cut(s) 226, 249, 332, 604, 664, 772, 782, 876, 1103
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 5 cut(s) 332, 466, 760, 792, 967
HpaII CCGG 3 cut(s) 37, 1021, 1152
HphI GGTGA 3 cut(s) 185, 326, 713
Hpy166II GTNNAC 5 cut(s) 10, 317, 688, 827, 931
Hpy188I TCNGA 9 cut(s) 97, 280, 359, 370, 589, 732, 765, 902, 1059
Hpy188III TCNNGA 5 cut(s) 329, 408, 455, 814, 921
Hpy8I GTNNAC 5 cut(s) 10, 317, 688, 827, 931
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 2 cut(s) 727, 1054
HpyCH4III ACNGT 6 cut(s) 101, 130, 146, 579, 1046, 1138
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 7 cut(s) 10, 497, 664, 743, 810, 985, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 641, 650
HpyF3I CTNAG 6 cut(s) 56, 356, 485, 636, 801, 956
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 9 cut(s) 226, 249, 332, 604, 664, 772, 782, 876, 1103
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 5 cut(s) 343, 616, 727, 765, 923
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 4 cut(s) 484, 548, 819, 994
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 480
MalI GATC 5 cut(s) 345, 618, 729, 767, 925
MboI GATC 5 cut(s) 343, 616, 727, 765, 923
MboII GAAGA 8 cut(s) 169, 172, 299, 419, 475, 503, 716, 959
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 3 cut(s) 12, 451, 843
MluCI AATT 2 cut(s) 716, 1009
MlyI GAGTC 2 cut(s) 326, 460
Mph1103I ATGCAT 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 300, 1008
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 3 cut(s) 37, 1021, 1152
MspR9I CCNGG 3 cut(s) 187, 478, 1152
MvaI CCWGG 2 cut(s) 187, 478
MvnI CGCG 2 cut(s) 621, 815
MwoI GCNNNNNNNGC 3 cut(s) 558, 641, 650
NciI CCSGG 1 cut(s) 1152
NdeII GATC 5 cut(s) 343, 616, 727, 765, 923
NlaIII CATG 9 cut(s) 226, 249, 332, 604, 664, 772, 782, 876, 1103
NlaIV GGNNCC 2 cut(s) 270, 840
NmeAIII GCCGAG 1 cut(s) 314
NruI TCGCGA 1 cut(s) 815
NsiI ATGCAT 1 cut(s) 812
NspI RCATGY 2 cut(s) 664, 1103
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 15
PagI TCATGA 1 cut(s) 328
PciI ACATGT 1 cut(s) 1099
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 760, 792, 967
PinAI ACCGGT 1 cut(s) 1020
PkrI GCNGC 2 cut(s) 217, 499
PleI GAGTC 2 cut(s) 326, 460
PpsI GAGTC 2 cut(s) 326, 460
PscI ACATGT 1 cut(s) 1099
Psp124BI GAGCTC 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 185, 476
PspGI CCWGG 2 cut(s) 185, 476
PspN4I GGNNCC 2 cut(s) 270, 840
PspPI GGNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 923
RruI TCGCGA 1 cut(s) 815
RsaI GTAC 3 cut(s) 143, 576, 773
RsaNI GTAC 3 cut(s) 142, 575, 772
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 300, 1008
SatI GCNGC 2 cut(s) 216, 498
Sau3AI GATC 5 cut(s) 343, 616, 727, 765, 923
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 2 cut(s) 326, 460
ScrFI CCNGG 3 cut(s) 187, 478, 1152
SduI GDGCHC 3 cut(s) 12, 451, 843
SfaNI GCATC 4 cut(s) 484, 548, 819, 994
SfcI CTRYAG 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 2 cut(s) 716, 1009
SsiI CCGC 5 cut(s) 215, 266, 613, 621, 725
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 185, 476, 1150
TaaI ACNGT 6 cut(s) 101, 130, 146, 579, 1046, 1138
TaiI ACGT 1 cut(s) 383
TaqI TCGA 5 cut(s) 29, 407, 454, 869, 920
TasI AATT 2 cut(s) 716, 1009
TatI WGTACW 2 cut(s) 141, 574
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 3 cut(s) 760, 792, 967
Tru1I TTAA 2 cut(s) 300, 1008
Tru9I TTAA 2 cut(s) 300, 1008
TscAI CASTG 3 cut(s) 346, 424, 671
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 6 cut(s) 317, 411, 476, 621, 795, 1081
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 346, 424, 671
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 276
XceI RCATGY 2 cut(s) 664, 1103
XmiI GTMKAC 2 cut(s) 687, 826
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.