pycom03g08630

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012131
Physical Location & Seq
Reverse (-)
6988606 .. 6989202
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08630.1

Sequence Viewer

Length: 597 bp
ATGATCGATCAGGTCTTCATCTCCGATCAAACCATCTCCTTCTCGCCGTCAAGATCCCTCTCCAAGTTATATTCCCCCACCTCCTCGGCCTTCAAACCCCTCTCCTCCCCTCCTTCCCAACCGCCGCCACCGCCACCGCAACTCGCCAGGACAACTCAGTCCCTGACTCGGGTGACCCAGTCCCAAACCCTCCACGAGATGATGTCCGACGATCAGCACGGGAACTCCAAGCTCCTCCCGGACCGGAAGGTCCACGAGAAAGTCCACAGGCTCCTCCAAAACGCGCCATTTCGGAACCCCAATTCGGGAGGGCTGGTGTCCGGCGACATCAGGCTGATGGTGGTGGCCAAGGACGGGTTCAGGGTCTCGATGGACGTGCACAAGAGCGTCCTGGAGGCGAAAAGCCGGTTCTTCGCCGAAAAACTCCGAAAAGACCGGGGGGTTTTGCACTGCGTGGAGATTTCGGACTGCGATGATGTGGAGGTGTATGTGGAGGCTGTGGTTCTCATGTATTATGATGATTTGACGAGGAGGTTGATGGGTGACGAGGTCTCTAGGGTTTTGGGTTTGCTGAAGGTATGTGCTTTTCGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.29

Weight (kDa)

8.79

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60050
fragaria_vesca FvH4_3g34280
malus_domestica MD03G1106900.v1.1 MD11G1119600.v1.1
prunus_persica Prupe.6G089700_v2.0.a1
pyrus_communis pycom03g08630 pycom11g10090
rosa_chinensis RchiOBHm_Chr5g0061841 RchiOBHm_Chr5g0061851
rosa_laevigata RLG00000035510
rosa_multiflora Rmu_sc0004134.1_g000002 Rmu_sc0011641.1_g000016
rosa_roxburghii Rroxscaffold_1G00018890
rosa_rugosa Rorug05G0344800
rosa_samantha Rh5AG405400 Rh5BG418200 Rh5CG442700 Rh5DG432300
rosa_wichuraiana Rw5G038060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 157, 248
AccII CGCG 1 cut(s) 284
AciI CCGC 4 cut(s) 122, 125, 131, 137
AclWI GGATC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 593
AdeI CACNNNGTG 1 cut(s) 454
AfiI CCNNNNNNNGG 5 cut(s) 168, 169, 304, 305, 354
AgsI TTSAA 1 cut(s) 94
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 146, 390
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 370, 556
Alw44I GTGCAC 1 cut(s) 377
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 87, 345
ApaLI GTGCAC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 241, 250
AsuC2I CCSGG 2 cut(s) 239, 437
AsuHPI GGTGA 2 cut(s) 184, 554
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 2 cut(s) 241, 250
BaeGI GKGCMC 1 cut(s) 381
BalI TGGCCA 1 cut(s) 347
BauI CACGAG 2 cut(s) 194, 254
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 381
BccI CCATC 4 cut(s) 41, 331, 364, 532
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 2 cut(s) 148, 392
BcnI CCSGG 2 cut(s) 239, 437
BcoDI GTCTC 2 cut(s) 370, 556
BfaI CTAG 1 cut(s) 555
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 4 cut(s) 148, 239, 392, 437
Bme18I GGWCC 2 cut(s) 241, 250
BmeT110I CYCGRG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 241, 250
BmiI GGNNCC 2 cut(s) 272, 296
BmrFI CCNGG 4 cut(s) 148, 239, 392, 437
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 239, 437
Bsa29I ATCGAT 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 370, 556
BsaJI CCNNGG 3 cut(s) 84, 348, 436
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 300, 330
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 169, 304, 305, 354
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 148, 392
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 3 cut(s) 84, 348, 436
BseLI CCNNNNNNNGG 5 cut(s) 168, 169, 304, 305, 354
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 5 cut(s) 73, 94, 224, 263, 544
BseSI GKGCMC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 89, 347
BshVI ATCGAT 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 5 cut(s) 239, 244, 321, 406, 436
BslFI GGGAC 2 cut(s) 145, 166
BslI CCNNNNNNNGG 5 cut(s) 168, 169, 304, 305, 354
BsmAI GTCTC 2 cut(s) 370, 556
BsmFI GGGAC 2 cut(s) 145, 166
BsnI GGCC 2 cut(s) 89, 347
Bso31I GGTCTC 2 cut(s) 370, 556
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 5 cut(s) 3, 7, 25, 53, 211
BspACI CCGC 4 cut(s) 122, 125, 131, 137
BspANI GGCC 2 cut(s) 89, 347
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 6
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 272, 296
BspPI GGATC 1 cut(s) 48
BspTNI GGTCTC 2 cut(s) 370, 556
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 84, 348, 436
BssMI GATC 5 cut(s) 3, 7, 25, 53, 211
BssSI CACGAG 2 cut(s) 194, 254
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 2 cut(s) 194, 254
Bst2UI CCWGG 2 cut(s) 148, 392
BstDEI CTNAG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 172
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 5 cut(s) 6, 10, 28, 56, 214
BstMAI GTCTC 2 cut(s) 370, 556
BstMBI GATC 5 cut(s) 3, 7, 25, 53, 211
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 148, 392
BstPI GGTNACC 1 cut(s) 172
BstSCI CCNGG 4 cut(s) 146, 237, 390, 435
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 2 cut(s) 89, 347
BsuTUI ATCGAT 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 241, 250
ClaI ATCGAT 1 cut(s) 6
CpoI CGGWCCG 1 cut(s) 241
CseI GACGC 1 cut(s) 376
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 1 cut(s) 508
CviJI RGCY 8 cut(s) 89, 232, 271, 313, 334, 347, 405, 497
CviKI_1 RGCY 8 cut(s) 89, 232, 271, 313, 334, 347, 405, 497
DdeI CTNAG 1 cut(s) 156
DpnI GATC 5 cut(s) 5, 9, 27, 55, 213
DpnII GATC 5 cut(s) 3, 7, 25, 53, 211
DraIII CACNNNGTG 1 cut(s) 454
DrdI GACNNNNNNGTC 2 cut(s) 157, 248
DseDI GACNNNNNNGTC 2 cut(s) 157, 248
EaeI YGGCCR 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 2 cut(s) 370, 556
Eco47I GGWCC 2 cut(s) 241, 250
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 146, 390
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 511
FaiI YATR 5 cut(s) 70, 489, 509, 516, 580
FaqI GGGAC 2 cut(s) 145, 166
FatI CATG 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 2 cut(s) 89, 347
HapII CCGG 5 cut(s) 239, 244, 321, 406, 436
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 1 cut(s) 166
HpaII CCGG 5 cut(s) 239, 244, 321, 406, 436
HphI GGTGA 2 cut(s) 184, 554
Hpy166II GTNNAC 3 cut(s) 253, 265, 379
Hpy188I TCNGA 5 cut(s) 25, 208, 294, 428, 466
Hpy188III TCNNGA 3 cut(s) 51, 306, 367
Hpy8I GTNNAC 3 cut(s) 253, 265, 379
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 5 cut(s) 49, 100, 123, 241, 568
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 379, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 5 cut(s) 3, 7, 25, 53, 211
LmnI GCTCC 2 cut(s) 237, 276
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 172, 542
MalI GATC 5 cut(s) 5, 9, 27, 55, 213
MboI GATC 5 cut(s) 3, 7, 25, 53, 211
MboII GAAGA 2 cut(s) 7, 403
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 1 cut(s) 301
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 231
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 347
MspI CCGG 5 cut(s) 239, 244, 321, 406, 436
MspR9I CCNGG 4 cut(s) 148, 239, 392, 437
MvaI CCWGG 2 cut(s) 148, 392
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 2 cut(s) 239, 437
NdeII GATC 5 cut(s) 3, 7, 25, 53, 211
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 2 cut(s) 272, 296
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 172, 542
PflFI GACNNNGTC 2 cut(s) 178, 548
PfoI TCCNGGA 2 cut(s) 237, 390
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 146, 390
PspEI GGTNACC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 146, 390
PspN4I GGNNCC 2 cut(s) 272, 296
PspPI GGNCC 2 cut(s) 241, 250
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 53
PsyI GACNNNGTC 2 cut(s) 178, 548
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 5 cut(s) 3, 7, 25, 53, 211
Sau96I GGNCC 2 cut(s) 241, 250
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 4 cut(s) 148, 239, 392, 437
SduI GDGCHC 1 cut(s) 381
SetI ASST 9 cut(s) 15, 83, 234, 252, 378, 486, 536, 552, 579
SinI GGWCC 2 cut(s) 241, 250
Sse9I AATT 1 cut(s) 301
SsiI CCGC 4 cut(s) 122, 125, 131, 137
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 4 cut(s) 146, 237, 390, 435
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 6, 368
TasI AATT 1 cut(s) 301
TauI GCSGC 1 cut(s) 127
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 2 cut(s) 172, 542
Tsp45I GTSAC 2 cut(s) 172, 542
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 455
Tth111I GACNNNGTC 2 cut(s) 178, 548
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 241, 250
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.