Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

24347783 .. 24350164

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTGCGGAAGAGCATTCGAATAAGAGAAGAGAAGTCTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGTAGTTGTGAATTTGAGGGTAGGAGAGGAGGATAACGATGGTCATCGCCTCAGGTTGGGATCTAGTGACTCAGTTCTCCCTGGTCTTATCGATGACGTTGCTCTTAACTGTCTTGCTTGGGTTCCAAGGTCAGATTATCCTTCCTTGTCATGTGTAAACAAGAAGTACAATAAGTTGATCAACAGTGGTCATTTGTTTGCTTTGAGAAAGGAATTGGGGATAGTGGAGTATCTTGTTTTCATGGTTTGTGATCCGAGAGGTTGGTTGATGTTTTCTCCTATGAAAAAGAAATGGATGGTGTTACCTAAAATGCCCTGTGACGAGTGCTTCAACCACGCGGATAAAGAGTCTTTGGCTGTAGATGACGAGCTTTTGGTCTTCGGGAGAGAGTTGTTTCAGTTTGCGATTTGGAAATACAGTTTGAGGTCTCGGTGTTGGGTCAAATGCGAAGGAATGCATCGTCCTCGCTGCTTGTTTGCATCGGGAAGCCTCGGTGGGATTGCTATAGTTGCGGGAGGAACTGATATGAATGGGAATATACTAGCATCAGCTGAGCTTTATGATTCTTCGTCAGGGAGATGGGAGATGCTTCCCAATATGCATTCACCTCGAAGACTATGCTCGGGTTTTTTCATGGATGGTAAGTTTTATGTGATTGGAGGCATGTCGAGCCCTAATGTATCAGTCACTTTTGGAGAGGAGTTTGATCTTGAGACAAGGAAATGGAGGAAGATAGAAGGAATGTATCCGAATGTGAACCGAGCAGCACAGGCTCCACCACTTGTTGTAGTGGTTAACAACGAGCTATTCACGCTTGAGTACTCAACCAATATGGTTAAGAAGTATGATAAGGTGAAGAACAAATGGGAAGTGATGGGAAGGTTACCGCCGATGGTGGACTCGTCAAACGGTTGGGGACTGGCGTTTAAACCGTGCGGGGATCAATTGTTGGTGTTTTGTGGGCAACGAGGTCCTCATGGCGAGGGCATTGTGGTGAATTCTTGGTGTCCGAAATCGGGAGCTAAAGATGGAAACTTGGATTGGAAAGTGCTTGGAGTTAAAGAGAATGTTGGTGTGTTTGTGTATAACTGCGCAGTGATGGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

393

Amino Acids

43.71

Weight (kDa)

8.13

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	140 - 294	2e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin	PF13964	159 - 272	9.2e-08	Calicin, beta-propeller domain
Kelch_1	PF01344	179 - 224	7.2e-09	Kelch motif
Kelch_FKB95	PF25210	195 - 268	4.3e-09	FKB95, Kelch-repeats domain
Kelch_1	PF01344	227 - 272	9.2e-07	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1165
AccII	CGCG	1 cut(s)	410
AciI	CCGC	5 cut(s)	8, 410, 584, 959, 1008
AclWI	GGATC	3 cut(s)	139, 317, 1020
AcsI	RAATTY	2 cut(s)	82, 1069
AfaI	GTAC	2 cut(s)	239, 893
AfiI	CCNNNNNNNGG	2 cut(s)	127, 1088
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	1096, 1128
AluBI	AGCT	5 cut(s)	442, 623, 628, 877, 1094
AluI	AGCT	5 cut(s)	442, 623, 628, 877, 1094
Alw26I	GTCTC	3 cut(s)	43, 504, 779
AlwI	GGATC	3 cut(s)	139, 317, 1020
Ama87I	CYCGRG	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	5, 540, 836
ApoI	RAATTY	2 cut(s)	82, 1069
AspLEI	GCGC	1 cut(s)	1166
AspS9I	GGNCC	1 cut(s)	1043
AsuHPI	GGTGA	3 cut(s)	669, 937, 1078
AsuII	TTCGAA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	1043
AxyI	CCTNAGG	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	746
BbsI	GAAGAC	2 cut(s)	442, 691
BbvI	GCAGC	2 cut(s)	527, 848
BccI	CCATC	8 cut(s)	104, 361, 645, 704, 940, 958, 1094, 1165
BcgI	CGANNNNNNTGC	8 cut(s)	152, 186, 518, 552, 662, 672, 696, 706
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	828
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	43, 504, 779
BfaI	CTAG	2 cut(s)	135, 614
BfmI	CTRYAG	3 cut(s)	72, 429, 576
BfuI	GTATCC	1 cut(s)	828
BisI	GCNGC	3 cut(s)	6, 541, 837
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	3 cut(s)	7, 542, 838
BmcAI	AGTACT	1 cut(s)	893
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	1043
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	1043
BmiI	GGNNCC	2 cut(s)	195, 846
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	4 cut(s)	538, 560, 626, 648
BpiI	GAAGAC	2 cut(s)	442, 691
Bpu1102I	GCTNAGC	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	803, 908
Bsa29I	ATCGAT	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	151, 197, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 1088
Bse1I	ACTGG	1 cut(s)	996
Bse21I	CCTNAGG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	151, 197, 562
BseGI	GGATG	2 cut(s)	372, 715
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	127, 1088
BseMII	CTCAG	3 cut(s)	136, 156, 615
BseNI	ACTGG	1 cut(s)	996
BseRI	GAGGAG	2 cut(s)	113, 785
BseXI	GCAGC	2 cut(s)	527, 848
Bsh1236I	CGCG	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	2 cut(s)	127, 1088
BsmAI	GTCTC	3 cut(s)	43, 504, 779
BsmFI	GGGAC	1 cut(s)	1002
BsmI	GAATGC	3 cut(s)	16, 531, 673
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	694
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	5 cut(s)	131, 249, 322, 778, 1012
Bsp1720I	GCTNAGC	1 cut(s)	624
BspACI	CCGC	5 cut(s)	8, 410, 584, 959, 1008
BspCNI	CTCAG	3 cut(s)	135, 155, 616
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	195, 846
BspPI	GGATC	3 cut(s)	139, 317, 1020
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	996
BssECI	CCNNGG	3 cut(s)	151, 197, 562
BssMI	GATC	5 cut(s)	131, 249, 322, 778, 1012
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	5 cut(s)	182, 257, 491, 983, 1005
Bst6I	CTCTTC	2 cut(s)	6, 25
BstBI	TTCGAA	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	122, 142, 624
BstEII	GGTNACC	1 cut(s)	954
BstF5I	GGATG	2 cut(s)	372, 715
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	1166
BstKTI	GATC	5 cut(s)	134, 252, 325, 781, 1015
BstMAI	GTCTC	3 cut(s)	43, 504, 779
BstMBI	GATC	5 cut(s)	131, 249, 322, 778, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 741, 842, 883
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	954
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	3 cut(s)	72, 429, 576
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	527, 848
BstV2I	GAAGAC	2 cut(s)	442, 691
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	828
BsuTUI	ATCGAT	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	372, 715
BtsI	GCAGTG	1 cut(s)	1173
BtsIMutI	CAGTG	2 cut(s)	262, 1173
CfoI	GCGC	1 cut(s)	1166
Cfr13I	GGNCC	1 cut(s)	1043
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	238, 892
CviAII	CATG	5 cut(s)	222, 313, 706, 736, 1049
CviQI	GTAC	2 cut(s)	238, 892
DdeI	CTNAG	3 cut(s)	122, 142, 624
DpnI	GATC	5 cut(s)	133, 251, 324, 780, 1014
DpnII	GATC	5 cut(s)	131, 249, 322, 778, 1012
DraI	TTTAAA	1 cut(s)	1000
Eam1104I	CTCTTC	2 cut(s)	6, 25
EarI	CTCTTC	2 cut(s)	6, 25
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	746
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	1043
Eco81I	CCTNAGG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	694
Eco91I	GGTNACC	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoO65I	GGTNACC	1 cut(s)	954
EcoRI	GAATTC	1 cut(s)	1069
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	2 cut(s)	531, 675
EcoT38I	GRGCYC	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	5 cut(s)	225, 316, 709, 739, 1052
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	5 cut(s)	221, 312, 705, 735, 1048
FauI	CCCGC	2 cut(s)	577, 1001
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	6, 541, 837
FokI	GGATG	2 cut(s)	379, 722
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	3 cut(s)	6, 541, 837
FspBI	CTAG	2 cut(s)	135, 614
FspI	TGCGCA	1 cut(s)	1165
GlaI	GCGC	1 cut(s)	1165
GluI	GCNGC	3 cut(s)	6, 541, 837
HhaI	GCGC	1 cut(s)	1166
Hin1II	CATG	5 cut(s)	225, 316, 709, 739, 1052
Hin6I	GCGC	1 cut(s)	1164
HinP1I	GCGC	1 cut(s)	1164
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	4 cut(s)	140, 419, 635, 971
HpaI	GTTAAC	1 cut(s)	868
HphI	GGTGA	3 cut(s)	669, 937, 1078
Hpy166II	GTNNAC	4 cut(s)	229, 829, 868, 970
Hpy188I	TCNGA	4 cut(s)	205, 327, 822, 1083
Hpy188III	TCNNGA	4 cut(s)	454, 555, 782, 1089
Hpy8I	GTNNAC	4 cut(s)	229, 829, 868, 970
HpyAV	CCTTC	4 cut(s)	222, 515, 803, 945
HpyCH4III	ACNGT	5 cut(s)	182, 257, 491, 983, 1005
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	529, 551, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 741, 842, 883
HpyF3I	CTNAG	3 cut(s)	122, 142, 624
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	225, 316, 709, 739, 1052
HspAI	GCGC	1 cut(s)	1164
Ksp22I	TGATCA	1 cut(s)	249
KspAI	GTTAAC	1 cut(s)	868
Kzo9I	GATC	5 cut(s)	131, 249, 322, 778, 1012
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	850, 1091
LpnPI	CCDG	7 cut(s)	109, 138, 165, 400, 630, 827, 977
Lsp1109I	GCAGC	2 cut(s)	527, 848
LweI	GCATC	4 cut(s)	538, 560, 626, 648
MaeI	CTAG	2 cut(s)	135, 614
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	5 cut(s)	137, 372, 389, 757, 954
MalI	GATC	5 cut(s)	133, 251, 324, 780, 1014
MboI	GATC	5 cut(s)	131, 249, 322, 778, 1012
MboII	GAAGA	7 cut(s)	23, 42, 442, 630, 696, 814, 940
MfeI	CAATTG	1 cut(s)	1016
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	4 cut(s)	82, 284, 1016, 1069
MlyI	GAGTC	3 cut(s)	134, 428, 965
Mph1103I	ATGCAT	2 cut(s)	531, 675
MseI	TTAA	5 cut(s)	177, 867, 909, 999, 1131
MslI	CAYNNNNRTG	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	153
MssI	GTTTAAAC	1 cut(s)	1000
MunI	CAATTG	1 cut(s)	1016
Mva1269I	GAATGC	3 cut(s)	16, 531, 673
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	581, 741, 842, 883
NdeII	GATC	5 cut(s)	131, 249, 322, 778, 1012
NlaIII	CATG	5 cut(s)	225, 316, 709, 739, 1052
NlaIV	GGNNCC	2 cut(s)	195, 846
NmuCI	GTSAC	3 cut(s)	137, 389, 757
NsbI	TGCGCA	1 cut(s)	1165
NsiI	ATGCAT	2 cut(s)	531, 675
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	3 cut(s)	16, 531, 673
PfeI	GAWTC	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	7, 542, 838
PleI	GAGTC	3 cut(s)	134, 427, 965
PmeI	GTTTAAAC	1 cut(s)	1000
PpsI	GAGTC	3 cut(s)	134, 427, 965
PpuMI	RGGWCCY	1 cut(s)	1043
Psp5II	RGGWCCY	1 cut(s)	1043
Psp6I	CCWGG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	195, 846
PspPI	GGNCC	1 cut(s)	1043
PspPPI	RGGWCCY	1 cut(s)	1043
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	239, 893
RsaNI	GTAC	2 cut(s)	238, 892
RseI	CAYNNNNRTG	1 cut(s)	1064
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	5 cut(s)	177, 867, 909, 999, 1131
SatI	GCNGC	3 cut(s)	6, 541, 837
Sau3AI	GATC	5 cut(s)	131, 249, 322, 778, 1012
Sau96I	GGNCC	1 cut(s)	1043
ScaI	AGTACT	1 cut(s)	893
SchI	GAGTC	3 cut(s)	134, 428, 965
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	4 cut(s)	538, 560, 626, 648
SfcI	CTRYAG	3 cut(s)	72, 429, 576
SfuI	TTCGAA	1 cut(s)	20
SinI	GGWCC	1 cut(s)	1043
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SmlI	CTYRAG	2 cut(s)	782, 887
SmoI	CTYRAG	2 cut(s)	782, 887
Sse9I	AATT	4 cut(s)	82, 284, 1016, 1069
SsiI	CCGC	5 cut(s)	8, 410, 584, 959, 1008
SspMI	CTAG	2 cut(s)	135, 614
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	5 cut(s)	182, 257, 491, 983, 1005
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	4 cut(s)	20, 162, 682, 740
TasI	AATT	4 cut(s)	82, 284, 1016, 1069
TatI	WGTACW	2 cut(s)	237, 891
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	5 cut(s)	177, 867, 909, 999, 1131
Tru9I	TTAA	5 cut(s)	177, 867, 909, 999, 1131
TscAI	CASTG	2 cut(s)	262, 1173
TseFI	GTSAC	3 cut(s)	137, 389, 757
TseI	GCWGC	3 cut(s)	5, 540, 836
Tsp45I	GTSAC	3 cut(s)	137, 389, 757
TspDTI	ATGAA	4 cut(s)	301, 368, 614, 694
TspRI	CASTG	2 cut(s)	262, 1173
VpaK11BI	GGWCC	1 cut(s)	1043
XapI	RAATTY	2 cut(s)	82, 1069
XceI	RCATGY	1 cut(s)	739
XspI	CTAG	2 cut(s)	135, 614
ZrmI	AGTACT	1 cut(s)	893
Zsp2I	ATGCAT	2 cut(s)	531, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.