Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Reverse (-)

64785172 .. 64786305

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAGAGAAGGAAGAGGGAGTAAATACTGTTGCGAAGGTGAATTTGAAGGGTAGAATGAATGATGGTCGCCGAAGATACGGATCAAGTGATTCTTTTTTCCCTGGTCTGGTTGATGATGTAGCTCTGCATTGCCTTGCTTGGACTCCTAGATCAGCTTATGCTTCACTGTCATGTACTAATACAAGGTTTAATAAGTTAATTAGAAGTGAGTATTTGTATGGGTTGAGGAAGCAGGTGGGAATTGAGGAGCATTGGGTGTATCTGGTTTGTGATTTGAGAGGGTGGGAAGCGTATGATCCGATGAGAAAGAAGTGGATGACATTGCCTAAGGTGCCTTGTGATGAGTGTTTCAACCATGCGGACAAGGAGTCTTTGGCTGTGGGAACTCAGTTGTTGGTTTTTGGTCGTGAATTGCTGGATTTTGCTATTTGGAAGTATAGTGTGATACATCATAGTTGGGTTAAATGTGAGGGAATGAGCAAGCCTCGCTGTTTGTTCGGGTCTGGCAGCCTTCGTTCTATTGCTATTGTTGCGGGCGGGAGTGATATAAATGGAAATGTTTTGAAGTCAGCAGAGTTATATGATTCTATATCTGGTAGGTGGAAAGTCTTACCAGATTTGCACACACCACGTAGATTGTGCTCTGGTTTCTTCATGGACGACAAGTTCTATGTCATTGGTGGGATGTCAAGTCCCTTTGATTCACTGACTTGTGGCGAGGAGTATGATCTGGAGACAGGGAAATGGAGGAAAATTGAGGGTATGTATCCATATGTCAATAAGGCAGCGCAGGCTCCTCCTCTTATCGCAGTAGTGGATAACCAACTATATGCAGTCGAGTATGAAACCAATATGGTTAAGAAGTATGACAAGGAGAAGAACACTTGGGATGTTATAGGAAGACTTCCAGTTAGGGCTGACTTTTCAAATGGCTGGGGCCTGGCTTTCAAGGCTTGTGGAAAGGAACTTCTTGTTGTGGGTGGCCAAAGAGGTCCAGAAGGCGAAAGTATTGTCCTGAACTCTTGGTGTCCAAAGTCAGGGGTTAAGAATGGTACCTTGGATTGGAAGGTGATTGGTCAAAAAGACAATGTGGGTGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

378

Amino Acids

42.39

Weight (kDa)

8.13

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	144 - 256	3.3e-08	Calicin, beta-propeller domain
Kelch_FKB95	PF25210	181 - 251	3.9e-06	FKB95, Kelch-repeats domain
Kelch_1	PF01344	211 - 256	2.1e-07	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
Acc65I	GGTACC	1 cut(s)	1055
AccB1I	GGYRCC	2 cut(s)	334, 1055
AciI	CCGC	3 cut(s)	362, 536, 540
AclWI	GGATC	2 cut(s)	91, 293
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	3 cut(s)	178, 1057, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	109, 1040, 1065
AgsI	TTSAA	5 cut(s)	49, 355, 568, 930, 952
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	103, 942
AjuI	GAANNNNNNNTTGG	2 cut(s)	1043, 1075
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	2 cut(s)	125, 158
AluI	AGCT	2 cut(s)	125, 158
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	731
AlwI	GGATC	2 cut(s)	91, 293
AoxI	GGCC	2 cut(s)	940, 985
ApeKI	GCWGC	2 cut(s)	510, 788
ApoI	RAATTY	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	999, 1031
Asp718I	GGTACC	1 cut(s)	1055
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	2 cut(s)	940, 995
AsuHPI	GGTGA	2 cut(s)	52, 1084
AvaII	GGWCC	1 cut(s)	995
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	987
BanI	GGYRCC	2 cut(s)	334, 1055
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	2 cut(s)	522, 800
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	105, 944
BciVI	GTATCC	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	780
BisI	GCNGC	2 cut(s)	511, 789
BlsI	GCNGC	2 cut(s)	512, 790
Bme1390I	CCNGG	2 cut(s)	105, 944
Bme18I	GGWCC	1 cut(s)	995
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	940, 995
BmiI	GGNNCC	4 cut(s)	336, 798, 941, 1057
BmrFI	CCNGG	2 cut(s)	105, 944
BpiI	GAAGAC	1 cut(s)	910
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpmI	CTGGAG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	103, 1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 1040, 1065
Bse1I	ACTGG	1 cut(s)	911
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	2 cut(s)	130, 323
Bse8I	GATNNNNATC	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	105, 944
BseDI	CCNNGG	2 cut(s)	103, 1059
BseGI	GGATG	3 cut(s)	324, 693, 898
BseJI	GATNNNNATC	1 cut(s)	82
BseLI	CCNNNNNNNGG	3 cut(s)	109, 1040, 1065
BseMI	GCAATG	2 cut(s)	130, 323
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	4 cut(s)	263, 737, 789, 792
BseXI	GCAGC	2 cut(s)	522, 800
BseYI	CCCAGC	1 cut(s)	936
BshFI	GGCC	2 cut(s)	942, 987
BshNI	GGYRCC	2 cut(s)	334, 1055
BsiHKAI	GWGCWC	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	3 cut(s)	109, 1040, 1065
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	942, 987
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	4 cut(s)	83, 152, 298, 730
BspACI	CCGC	3 cut(s)	362, 536, 540
BspANI	GGCC	2 cut(s)	942, 987
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	336, 798, 941, 1057
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	91, 293
BspT107I	GGYRCC	2 cut(s)	334, 1055
BsrDI	GCAATG	2 cut(s)	130, 323
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	2 cut(s)	103, 1059
BssMI	GATC	4 cut(s)	83, 152, 298, 730
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	2 cut(s)	105, 944
Bst4CI	ACNGT	3 cut(s)	31, 171, 1115
Bst6I	CTCTTC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	1107
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	485, 538, 795
BstDEI	CTNAG	2 cut(s)	330, 390
BstF5I	GGATG	3 cut(s)	324, 693, 898
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	4 cut(s)	86, 155, 301, 733
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	4 cut(s)	83, 152, 298, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	334, 489, 533, 794, 953
BstNI	CCWGG	2 cut(s)	105, 944
BstSCI	CCNGG	2 cut(s)	103, 942
BstV1I	GCAGC	2 cut(s)	522, 800
BstV2I	GAAGAC	1 cut(s)	910
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	780
BsuRI	GGCC	2 cut(s)	942, 987
BtsCI	GGATG	3 cut(s)	324, 693, 898
BtsIMutI	CAGTG	2 cut(s)	167, 707
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	485, 538, 795
CfoI	GCGC	1 cut(s)	793
Cfr13I	GGNCC	2 cut(s)	940, 995
Csp6I	GTAC	3 cut(s)	177, 1056, 1108
CspCI	CAANNNNNGTGG	4 cut(s)	621, 656, 940, 975
CviAII	CATG	3 cut(s)	174, 359, 658
CviQI	GTAC	3 cut(s)	177, 1056, 1108
DdeI	CTNAG	2 cut(s)	330, 390
DpnI	GATC	4 cut(s)	85, 154, 300, 732
DpnII	GATC	4 cut(s)	83, 152, 298, 730
DriI	GACNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	1059
Eco47I	GGWCC	1 cut(s)	995
Eco81I	CCTNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	103, 942
EcoT14I	CCWWGG	1 cut(s)	1059
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	3 cut(s)	177, 362, 661
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	3 cut(s)	173, 358, 657
FauI	CCCGC	2 cut(s)	529, 533
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	2 cut(s)	511, 789
FokI	GGATG	3 cut(s)	331, 700, 905
Fsp4HI	GCNGC	2 cut(s)	511, 789
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	2 cut(s)	511, 789
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	2 cut(s)	942, 987
HhaI	GCGC	1 cut(s)	793
Hin1II	CATG	3 cut(s)	177, 362, 661
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HinfI	GANTC	5 cut(s)	92, 145, 371, 587, 704
HphI	GGTGA	2 cut(s)	52, 1084
Hpy166II	GTNNAC	1 cut(s)	1108
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	4 cut(s)	410, 734, 998, 1018
Hpy8I	GTNNAC	1 cut(s)	1108
HpyAV	CCTTC	6 cut(s)	4, 31, 43, 524, 995, 1063
HpyCH4III	ACNGT	3 cut(s)	31, 171, 1115
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	4 cut(s)	130, 625, 836, 1118
HpyF10VI	GCNNNNNNNGC	5 cut(s)	334, 489, 533, 794, 953
HpyF3I	CTNAG	2 cut(s)	330, 390
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	177, 362, 661
HspAI	GCGC	1 cut(s)	791
KpnI	GGTACC	1 cut(s)	1059
Kzo9I	GATC	4 cut(s)	83, 152, 298, 730
LmnI	GCTCC	2 cut(s)	250, 802
Lsp1109I	GCAGC	2 cut(s)	522, 800
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	634
MalI	GATC	4 cut(s)	85, 154, 300, 732
MboI	GATC	4 cut(s)	83, 152, 298, 730
MboII	GAAGA	6 cut(s)	17, 26, 87, 646, 892, 915
MhlI	GDGCHC	1 cut(s)	647
MlsI	TGGCCA	1 cut(s)	987
MluCI	AATT	5 cut(s)	43, 201, 243, 413, 756
MluNI	TGGCCA	1 cut(s)	987
MlyI	GAGTC	2 cut(s)	139, 380
Mox20I	TGGCCA	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	987
MseI	TTAA	5 cut(s)	192, 200, 465, 861, 1047
MslI	CAYNNNNRTG	1 cut(s)	172
Msp20I	TGGCCA	1 cut(s)	987
MspR9I	CCNGG	2 cut(s)	105, 944
MvaI	CCWGG	2 cut(s)	105, 944
MwoI	GCNNNNNNNGC	5 cut(s)	334, 489, 533, 794, 953
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	4 cut(s)	83, 152, 298, 730
NlaIII	CATG	3 cut(s)	177, 362, 661
NlaIV	GGNNCC	4 cut(s)	336, 798, 941, 1057
PaqCI	CACCTGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	92, 587, 704
PkrI	GCNGC	2 cut(s)	512, 790
PleI	GAGTC	2 cut(s)	139, 379
PpsI	GAGTC	2 cut(s)	139, 379
Ppu21I	YACGTR	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	103, 942
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	103, 942
PspN4I	GGNNCC	4 cut(s)	336, 798, 941, 1057
PspPI	GGNCC	2 cut(s)	940, 995
RsaI	GTAC	3 cut(s)	178, 1057, 1109
RsaNI	GTAC	3 cut(s)	177, 1056, 1108
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	5 cut(s)	192, 200, 465, 861, 1047
SatI	GCNGC	2 cut(s)	511, 789
Sau3AI	GATC	4 cut(s)	83, 152, 298, 730
Sau96I	GGNCC	2 cut(s)	940, 995
SchI	GAGTC	2 cut(s)	139, 380
ScrFI	CCNGG	2 cut(s)	105, 944
SduI	GDGCHC	1 cut(s)	647
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	5 cut(s)	43, 201, 243, 413, 756
SsiI	CCGC	3 cut(s)	362, 536, 540
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	103, 942
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	3 cut(s)	31, 171, 1115
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	1 cut(s)	840
TasI	AATT	5 cut(s)	43, 201, 243, 413, 756
TatI	WGTACW	2 cut(s)	176, 1107
TfiI	GAWTC	3 cut(s)	92, 587, 704
Tru1I	TTAA	5 cut(s)	192, 200, 465, 861, 1047
Tru9I	TTAA	5 cut(s)	192, 200, 465, 861, 1047
TscAI	CASTG	2 cut(s)	174, 714
TseI	GCWGC	2 cut(s)	510, 788
TspDTI	ATGAA	3 cut(s)	74, 646, 861
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	174, 714
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.