Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Reverse (-)

38844585 .. 38847455

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0323600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCACCCAAGAAGGAAAAGGCTCCCCCACCGTCCTCAAAGCCCGCCAAATCTGGCGGAGGCAAGCAGAAGAAGAAGTGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTCGATCAGGCCACTTATGACAAGCTTCTTTCGGAGGCTCCCAAGTTCAAGCTCATCACTCCTTCTATCTTGTCAGACAGGCTGAGGATTAATGGATCATTGGCACGCCGTGCAATTAAGGATTTGATGGCAAGGGGTTCTATTAGGATGATTTCTGCTCATGCTAGTCAGCAGATCTACACCAGAGCCACCAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008277 GO:0008589 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045744 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

10.67

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S25	PF03297	6 - 104	8.1e-40	S25 ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	45, 57
AclWI	GGATC	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	148, 175
AluI	AGCT	2 cut(s)	148, 175
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	132
AseI	ATTAAT	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	6, 24, 162
Bpu10I	CCTNAGC	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
BseGI	GGATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	127, 218, 297
BspACI	CCGC	2 cut(s)	45, 57
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	6, 24, 162
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	3 cut(s)	127, 218, 297
Bst4CI	ACNGT	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	45, 65, 229
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	3 cut(s)	130, 221, 300
BstMBI	GATC	3 cut(s)	127, 218, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	45, 65, 229
CviAII	CATG	2 cut(s)	115, 284
CviJI	RGCY	8 cut(s)	23, 43, 134, 148, 161, 175, 205, 311
CviKI_1	RGCY	8 cut(s)	23, 43, 134, 148, 161, 175, 205, 311
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	3 cut(s)	129, 220, 299
DpnII	GATC	3 cut(s)	127, 218, 297
DraIII	CACNNNGTG	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	72
FaeI	CATG	2 cut(s)	118, 287
FaiI	YATR	3 cut(s)	116, 141, 285
FatI	CATG	2 cut(s)	114, 283
FauI	CCCGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	283
FspBI	CTAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	118, 287
HindIII	AAGCTT	1 cut(s)	146
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	157, 199
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	7, 97, 195
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	118, 287
Kzo9I	GATC	3 cut(s)	127, 218, 297
LmnI	GCTCC	3 cut(s)	28, 81, 166
LpnPI	CCDG	4 cut(s)	39, 116, 187, 319
MaeI	CTAG	1 cut(s)	288
MalI	GATC	3 cut(s)	129, 220, 299
MboI	GATC	3 cut(s)	127, 218, 297
MboII	GAAGA	2 cut(s)	82, 85
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	4 cut(s)	46, 53, 151, 201
MseI	TTAA	2 cut(s)	213, 240
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	3 cut(s)	127, 218, 297
NlaIII	CATG	2 cut(s)	118, 287
NlaIV	GGNNCC	3 cut(s)	6, 24, 162
PshBI	ATTAAT	1 cut(s)	213
PspN4I	GGNNCC	3 cut(s)	6, 24, 162
PsuI	RGATCY	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	213, 240
Sau3AI	GATC	3 cut(s)	127, 218, 297
SetI	ASST	4 cut(s)	108, 150, 177, 323
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	45, 57
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	213, 240
Tru9I	TTAA	2 cut(s)	213, 240
VspI	ATTAAT	1 cut(s)	213
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.