Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

12362289 .. 12364294

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1134500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAGAAACATGCCTTCCCCGATGGCTCATTATGGGAAAGAAGAAAAAGATGAGAGAGCAAATGTTATTTCGAATTTGAAGGGGAGAATGAGTGATGGTCGTCGTAGGTATGGATCAAGTGATTCATTTGTCCCCGGTCTTGTTGACGATGTAGCTTTGAATTGCCTTGCTTGGGCTTCTAGATCGGATTATGCTTCGCTGTCATGTATTAATACAAGGTTTAATAAGTTAATTAAAAGTGGGTATTTGTATGGGTTGAGGGAGCAGTTGGGAATTGTGGAGCATTGGGTGTATCTGGTGTGTGATTTAAAAGGGTGGGAGGCATTTGATCCAGTGAGAAAGAAATGGATGACATTGCCTAAGATGCCTTGTGATGAGTGTTTCAATCATGCGGATAAGGAGTCTTTGGCTGTAGGAAGTCAGTTGTTGGTTTTCGGCCGTGAACTGTTGGATTTTGCTATTTGGAAGTATAGTGCAATATATCGTAGCTGGATAAAATGTCAGGGAATGAACCAGCCCCGCTGTTTGTTTGGGTCTGGTAGCCTTGGTTCAATTGCTATTGTTGCGGGTGGGAGTGATAGAAACGGAAATGTTTTGAAATCAGCGGAGATATATGATTCTGTATCGGGTAGGTGGGAAATGCTACCCAACATGCACACACCACGTAGATTGTGCACTGGTTTTTTCTGGGATGGCAAATTCTACGTTATGGGTGGGATGTCAAGTCCTAATGATTCACTGACTTGTGGGGAGGAATATGATCTTGAGACCGGGAAATGGAGGAAAATTGAGGGTATGTATCCATCTGTCAATATAGCCGCACAGGCTCCTCCTCTTTGTGCAGTTGTTGATAACCAATTGTATGCAGTTGAGTATTTAACCAACATGGTGAAGAAGTATGACAAGGGGAAGAACACCTGGGGTGTTTTAGGAAGACTTCCAGTGAGGGCTGACTCTTCAAATGGCTGGGGCCTGGCCTTCAAGGCTTGCGGAAAGGAACTTCTTGTCGTGGGTGGGCAACGAGGTCCTGAAGGTGAAGGTATTGTTCTGAACTCATGGTCTCCAAAGTCAGGGATCAAGAATGGCACTTTGGATTGGAAAGTTATCGGTGTGAAAGAGCATGTTGGGGTGTTTGTGTACAACTGTGCGGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

388

Amino Acids

43.07

Weight (kDa)

8.67

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	161 - 266	2.6e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	173 - 218	8.4e-09	Kelch motif
Kelch_KLHDC2_KLHL20_DRC7	PF24681	183 - 310	5.2e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95	PF25210	188 - 262	5.9e-09	FKB95, Kelch-repeats domain
Kelch_1	PF01344	221 - 266	3.1e-09	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	392, 520, 566, 605, 819, 990, 1148
AclWI	GGATC	3 cut(s)	121, 323, 1082
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	73, 698
AcuI	CTGAAG	1 cut(s)	1050
AfaI	GTAC	1 cut(s)	1139
AfiI	CCNNNNNNNGG	3 cut(s)	172, 777, 1070
AgsI	TTSAA	7 cut(s)	79, 160, 385, 552, 598, 960, 982
AjnI	CCWGG	2 cut(s)	917, 972
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AluBI	AGCT	2 cut(s)	155, 489
AluI	AGCT	2 cut(s)	155, 489
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	2 cut(s)	761, 1065
Alw44I	GTGCAC	1 cut(s)	673
AlwI	GGATC	3 cut(s)	121, 323, 1082
AoxI	GGCC	3 cut(s)	436, 970, 975
ApaLI	GTGCAC	1 cut(s)	673
ApoI	RAATTY	2 cut(s)	73, 698
AseI	ATTAAT	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	970, 1025
AsuC2I	CCSGG	2 cut(s)	135, 772
AsuHPI	GGTGA	2 cut(s)	901, 1046
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	1025
BaeGI	GKGCMC	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	940
Bbv12I	GWGCWC	1 cut(s)	677
BccI	CCATC	4 cut(s)	16, 89, 686, 811
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	2 cut(s)	919, 974
BciVI	GTATCC	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	135, 772
BcoDI	GTCTC	2 cut(s)	761, 1065
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	810
BglI	GCCNNNNNGGC	2 cut(s)	824, 983
BisI	GCNGC	1 cut(s)	819
BlsI	GCNGC	1 cut(s)	820
Bme1390I	CCNGG	4 cut(s)	135, 772, 919, 974
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	970, 1025
BmiI	GGNNCC	2 cut(s)	828, 971
BmrFI	CCNGG	4 cut(s)	135, 772, 919, 974
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	940
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	2 cut(s)	135, 772
BsaAI	YACGTR	1 cut(s)	665
BsaI	GGTCTC	2 cut(s)	761, 1065
BsaJI	CCNNGG	3 cut(s)	133, 544, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 777, 1070
Bse1I	ACTGG	3 cut(s)	332, 682, 941
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	919, 974
BseDI	CCNNGG	3 cut(s)	133, 544, 918
BseGI	GGATG	3 cut(s)	354, 697, 723
BseLI	CCNNNNNNNGG	3 cut(s)	172, 777, 1070
BseMI	GCAATG	1 cut(s)	353
BseNI	ACTGG	3 cut(s)	332, 682, 941
BseRI	GAGGAG	2 cut(s)	819, 822
BseSI	GKGCMC	1 cut(s)	677
BseX3I	CGGCCG	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	966
BsgI	GTGCAG	1 cut(s)	861
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	438, 972, 977
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	677
BsiSI	CCGG	2 cut(s)	135, 771
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	172, 777, 1070
BsmAI	GTCTC	2 cut(s)	761, 1065
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	438, 972, 977
Bso31I	GGTCTC	2 cut(s)	761, 1065
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp1407I	TGTACA	1 cut(s)	1137
Bsp143I	GATC	5 cut(s)	113, 182, 328, 760, 1074
BspACI	CCGC	7 cut(s)	392, 520, 566, 605, 819, 990, 1148
BspANI	GGCC	3 cut(s)	438, 972, 977
BspLI	GGNNCC	2 cut(s)	828, 971
BspPI	GGATC	3 cut(s)	121, 323, 1082
BspT104I	TTCGAA	1 cut(s)	71
BspTNI	GGTCTC	2 cut(s)	761, 1065
BsrDI	GCAATG	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	1137
BsrI	ACTGG	3 cut(s)	332, 682, 941
BssECI	CCNNGG	3 cut(s)	133, 544, 918
BssMI	GATC	5 cut(s)	113, 182, 328, 760, 1074
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	919, 974
Bst4CI	ACNGT	2 cut(s)	447, 1145
Bst6I	CTCTTC	1 cut(s)	961
BstAUI	TGTACA	1 cut(s)	1137
BstBAI	YACGTR	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	988
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	354, 697, 723
BstKTI	GATC	5 cut(s)	116, 185, 331, 763, 1077
BstMAI	GTCTC	2 cut(s)	761, 1065
BstMBI	GATC	5 cut(s)	113, 182, 328, 760, 1074
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
BstNI	CCWGG	2 cut(s)	919, 974
BstNSI	RCATGY	3 cut(s)	13, 655, 1124
BstSCI	CCNGG	4 cut(s)	133, 770, 917, 972
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	677
BstV2I	GAAGAC	1 cut(s)	940
BstZI	CGGCCG	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	438, 972, 977
BtsCI	GGATG	3 cut(s)	354, 697, 723
BtsIMutI	CAGTG	4 cut(s)	339, 675, 737, 948
Cac8I	GCNNGC	1 cut(s)	988
Cfr13I	GGNCC	2 cut(s)	970, 1025
Csp6I	GTAC	1 cut(s)	1138
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	7 cut(s)	10, 204, 389, 652, 886, 1056, 1121
CviQI	GTAC	1 cut(s)	1138
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	5 cut(s)	115, 184, 330, 762, 1076
DpnII	GATC	5 cut(s)	113, 182, 328, 760, 1074
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	961
EarI	CTCTTC	1 cut(s)	961
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	544
Eco31I	GGTCTC	2 cut(s)	761, 1065
Eco47I	GGWCC	1 cut(s)	1025
Eco52I	CGGCCG	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1050
EcoO109I	RGGNCCY	2 cut(s)	970, 1025
EcoRII	CCWGG	2 cut(s)	917, 972
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1124
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	7 cut(s)	9, 203, 388, 651, 885, 1055, 1120
FauI	CCCGC	2 cut(s)	527, 559
Fnu4HI	GCNGC	1 cut(s)	819
FokI	GGATG	3 cut(s)	361, 704, 730
Fsp4HI	GCNGC	1 cut(s)	819
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	819
GsaI	CCCAGC	1 cut(s)	970
HaeIII	GGCC	3 cut(s)	438, 972, 977
HapII	CCGG	2 cut(s)	135, 771
Hin1II	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1124
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	5 cut(s)	122, 401, 617, 734, 953
HpaII	CCGG	2 cut(s)	135, 771
HphI	GGTGA	2 cut(s)	901, 1046
Hpy166II	GTNNAC	4 cut(s)	145, 443, 675, 1138
Hpy188I	TCNGA	2 cut(s)	187, 1050
Hpy188III	TCNNGA	4 cut(s)	180, 764, 1028, 1078
Hpy8I	GTNNAC	4 cut(s)	145, 443, 675, 1138
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	5 cut(s)	24, 73, 988, 1025, 1031
HpyCH4III	ACNGT	2 cut(s)	447, 1145
HpyCH4IV	ACGT	2 cut(s)	664, 705
HpyCH4V	TGCA	5 cut(s)	476, 655, 675, 842, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	664, 705
Hsp92II	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1124
Kzo9I	GATC	5 cut(s)	113, 182, 328, 760, 1074
LmnI	GCTCC	3 cut(s)	262, 280, 832
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	664, 705
MalI	GATC	5 cut(s)	115, 184, 330, 762, 1076
MboI	GATC	5 cut(s)	113, 182, 328, 760, 1074
MboII	GAAGA	5 cut(s)	53, 904, 922, 945, 948
MfeI	CAATTG	2 cut(s)	552, 857
MhlI	GDGCHC	1 cut(s)	677
MluCI	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
MlyI	GAGTC	2 cut(s)	410, 947
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	9 cut(s)	252, 313, 745, 774, 784, 840, 843, 939, 1016
MseI	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
MspA1I	CMGCKG	2 cut(s)	522, 605
MspI	CCGG	2 cut(s)	135, 771
MspR9I	CCNGG	4 cut(s)	135, 772, 919, 974
MunI	CAATTG	2 cut(s)	552, 857
MvaI	CCWGG	2 cut(s)	919, 974
MwoI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
NciI	CCSGG	2 cut(s)	135, 772
NdeII	GATC	5 cut(s)	113, 182, 328, 760, 1074
NlaIII	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1124
NlaIV	GGNNCC	2 cut(s)	828, 971
NspI	RCATGY	3 cut(s)	13, 655, 1124
NspV	TTCGAA	1 cut(s)	71
PacI	TTAATTAA	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	122, 617, 734
PkrI	GCNGC	1 cut(s)	820
PleI	GAGTC	2 cut(s)	409, 947
PpsI	GAGTC	2 cut(s)	409, 947
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	1025
PshBI	ATTAAT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	2 cut(s)	917, 972
PspFI	CCCAGC	1 cut(s)	966
PspGI	CCWGG	2 cut(s)	917, 972
PspN4I	GGNNCC	2 cut(s)	828, 971
PspPI	GGNCC	2 cut(s)	970, 1025
PspPPI	RGGWCCY	1 cut(s)	1025
PsrI	GAACNNNNNNTAC	2 cut(s)	532, 564
RsaI	GTAC	1 cut(s)	1139
RsaNI	GTAC	1 cut(s)	1138
SaqAI	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
SatI	GCNGC	1 cut(s)	819
Sau3AI	GATC	5 cut(s)	113, 182, 328, 760, 1074
Sau96I	GGNCC	2 cut(s)	970, 1025
SchI	GAGTC	2 cut(s)	410, 947
ScrFI	CCNGG	4 cut(s)	135, 772, 919, 974
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	1025
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
SsiI	CCGC	7 cut(s)	392, 520, 566, 605, 819, 990, 1148
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	133, 770, 917, 972
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	447, 1145
TaiI	ACGT	2 cut(s)	667, 708
TaqI	TCGA	1 cut(s)	71
TasI	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
TatI	WGTACW	1 cut(s)	1137
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	3 cut(s)	122, 617, 734
Tru1I	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
Tru9I	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
TscAI	CASTG	4 cut(s)	339, 682, 744, 948
TspDTI	ATGAA	2 cut(s)	114, 524
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	4 cut(s)	339, 682, 744, 948
VneI	GTGCAC	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	1025
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	2 cut(s)	73, 698
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	3 cut(s)	13, 655, 1124
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.