Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

6993225 .. 6997983

Gene Structure 4759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G100400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGACACATAATGTGATGATAAATCTCACCAAGCAAAGCAAAGTGAGTGTTATATATCACAGACTTCAGCTCTCTCTCTCTCTCTCTCGTTCGCATCTTTTTTCTCAATTCCTCGCCGGACCTCGGCAACATGCTCGACGGAAAACTTTTCCGGCCTCATTCGCCGGCGACCTGACTATTGAGATCCGATACCGATTGTACGCACTTTCCGGTTTGCAGGGAAGAGTGAATGATGGTCGCCGTAGGTATGGATCAAGTGATTCGCTTGTCCCAGGTCTTGTGGATGATGTAGCTTTGAATTGCCTTGCTTGGGCTTGTAGATCGGATTATGCTTCGCTGTCATGTATTAACACAAAGTTTAATAAGTTAATTAAAAGTGGGTATTTGTATGAGTTAAGGAAGCAGTTGGGAATTTTGGAACATTGGGTGTATCTAGTGTGTGATTTGAGAGGGTGGGAGGCGTTTGATCCAGTGAGCAAGAAATGGATGACATTGCCTAAGATGCCTTGTGATGAGTGTTTTAACCATGCCGATAAGGAGTCTTTGGCTGTGGGAAGTCAGTTGTTGGTTTTTGGTCGTGAGCTGTTGGATTTTGCTATTTGGAAGTACAGTGCAATACATCGTAGTTGGGTAAAATGTCAGGGAATGAACCAGCCTCGCTGCTTGTTTGGGTCTGGTAGCCTTGGTTCAATTTCTATTGTTGCGGGTGGGAGTGATAAAAATGGAAATGTGTTGAAATCAGCAGAGATATATGATTCTGAATCAGGCAGGTGGGAAATGCTACCTAACATGCACACACCTCGTAGATTGTGCACTGGTTTTTTCTTGGACAGCAAATTCTACGTCATTGGTGGGATGTCAAGTCCTACTGAATCACTGACTTGTGGGGAGGAATATGATCTTGAGACGGGGAAATGGAGGAAAATTGAGGGTATGTTTCCATATGTCAATAGGGCTGCACAGGCTCCTCCTCTTGTGGCAGTTGTTGATAATCAATTATATGCAGTTGAGTATTTAACCAACATGGTGAAGAAGTATGACAAGGAGAAGAACACCTGGGATGTTTTAGGAAGACTTCCAGTGAGGGCTGACTCTTCAAATGGCTGGGGCCTGGCTTTTAAGGCTTGTGGAAAGGAGCTTCTGGTTGTTGGTGGGCAAAGAGGTCCAGAAGGCGAAGGTATTGTCCTCAACTCTTGGTCTCCAAAGTCAGGGGTCAAGAATGGCACCTTGGATTGGAAAGTTATTGGTGTGAAAGAGCATGTTGGGGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

434

Amino Acids

48.45

Weight (kDa)

9.02

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	1223
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	178, 259, 461
AcsI	RAATTY	2 cut(s)	411, 836
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	200, 608, 1277
AfiI	CCNNNNNNNGG	4 cut(s)	123, 310, 1208, 1233
AgsI	TTSAA	4 cut(s)	298, 690, 736, 1098
AjnI	CCWGG	3 cut(s)	271, 1055, 1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	1211, 1243
AluBI	AGCT	4 cut(s)	70, 293, 583, 1138
AluI	AGCT	4 cut(s)	70, 293, 583, 1138
Alw21I	GWGCWC	1 cut(s)	815
Alw26I	GTCTC	2 cut(s)	899, 1203
Alw44I	GTGCAC	1 cut(s)	811
AlwI	GGATC	3 cut(s)	178, 259, 461
AoxI	GGCC	2 cut(s)	153, 1108
ApaLI	GTGCAC	1 cut(s)	811
ApeKI	GCWGC	2 cut(s)	660, 956
ApoI	RAATTY	2 cut(s)	411, 836
ArsI	GACNNNNNNTTYG	4 cut(s)	828, 860, 1167, 1199
AspS9I	GGNCC	3 cut(s)	119, 1108, 1163
AsuHPI	GGTGA	2 cut(s)	19, 1039
AvaII	GGWCC	2 cut(s)	119, 1163
BaeGI	GKGCMC	1 cut(s)	815
BanI	GGYRCC	1 cut(s)	1223
BbsI	GAAGAC	1 cut(s)	1078
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	647, 943
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 782, 816
BciT130I	CCWGG	3 cut(s)	273, 1057, 1112
BcoDI	GTCTC	2 cut(s)	899, 1203
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	759
BisI	GCNGC	2 cut(s)	661, 957
BlsI	GCNGC	2 cut(s)	662, 958
Bme1390I	CCNGG	3 cut(s)	273, 1057, 1112
Bme18I	GGWCC	2 cut(s)	119, 1163
BmgT120I	GGNCC	3 cut(s)	119, 1108, 1163
BmiI	GGNNCC	3 cut(s)	966, 1109, 1225
BmrFI	CCNGG	3 cut(s)	273, 1057, 1112
BmsI	GCATC	2 cut(s)	103, 492
BpiI	GAAGAC	1 cut(s)	1078
BpuEI	CTTGAG	1 cut(s)	923
BsaI	GGTCTC	1 cut(s)	1203
BsaJI	CCNNGG	5 cut(s)	122, 271, 682, 1056, 1227
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 310, 1208, 1233
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	470, 820, 1079
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	3 cut(s)	273, 1057, 1112
BseDI	CCNNGG	5 cut(s)	122, 271, 682, 1056, 1227
BseGI	GGATG	4 cut(s)	289, 492, 861, 1066
BseLI	CCNNNNNNNGG	4 cut(s)	123, 310, 1208, 1233
BseMI	GCAATG	1 cut(s)	491
BseNI	ACTGG	3 cut(s)	470, 820, 1079
BseRI	GAGGAG	2 cut(s)	957, 960
BseSI	GKGCMC	1 cut(s)	815
BseXI	GCAGC	2 cut(s)	647, 943
BseYI	CCCAGC	1 cut(s)	1104
BsgI	GTGCAG	1 cut(s)	942
BshFI	GGCC	2 cut(s)	155, 1110
BshNI	GGYRCC	1 cut(s)	1223
BsiHKAI	GWGCWC	1 cut(s)	815
BsiSI	CCGG	4 cut(s)	117, 152, 165, 210
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	123, 310, 1208, 1233
BsmAI	GTCTC	2 cut(s)	899, 1203
BsmBI	CGTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	155, 1110
Bso31I	GGTCTC	1 cut(s)	1203
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp1407I	TGTACA	1 cut(s)	1275
Bsp143I	GATC	5 cut(s)	183, 251, 320, 466, 898
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	2 cut(s)	155, 1110
BspLI	GGNNCC	3 cut(s)	966, 1109, 1225
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	3 cut(s)	178, 259, 461
BspT107I	GGYRCC	1 cut(s)	1223
BspTNI	GGTCTC	1 cut(s)	1203
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	1275
BsrI	ACTGG	3 cut(s)	470, 820, 1079
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	5 cut(s)	122, 271, 682, 1056, 1227
BssMI	GATC	5 cut(s)	183, 251, 320, 466, 898
BssT1I	CCWWGG	2 cut(s)	682, 1227
Bst2UI	CCWGG	3 cut(s)	273, 1057, 1112
Bst4CI	ACNGT	2 cut(s)	611, 1283
Bst6I	CTCTTC	2 cut(s)	217, 1099
BstAUI	TGTACA	1 cut(s)	1275
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	4 cut(s)	289, 492, 861, 1066
BstKTI	GATC	5 cut(s)	186, 254, 323, 469, 901
BstMAI	GTCTC	2 cut(s)	899, 1203
BstMBI	GATC	5 cut(s)	183, 251, 320, 466, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 502, 962, 1121
BstNI	CCWGG	3 cut(s)	273, 1057, 1112
BstNSI	RCATGY	3 cut(s)	134, 793, 1262
BstSCI	CCNGG	3 cut(s)	271, 1055, 1110
BstSLI	GKGCMC	1 cut(s)	815
BstV1I	GCAGC	2 cut(s)	647, 943
BstV2I	GAAGAC	1 cut(s)	1078
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	155, 1110
BtsCI	GGATG	4 cut(s)	289, 492, 861, 1066
BtsIMutI	CAGTG	5 cut(s)	477, 616, 813, 875, 1086
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	119, 1108, 1163
Csp6I	GTAC	3 cut(s)	199, 607, 1276
CviAII	CATG	6 cut(s)	131, 342, 527, 790, 1024, 1259
CviQI	GTAC	3 cut(s)	199, 607, 1276
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	5 cut(s)	185, 253, 322, 468, 900
DpnII	GATC	5 cut(s)	183, 251, 320, 466, 898
Eam1104I	CTCTTC	2 cut(s)	217, 1099
EarI	CTCTTC	2 cut(s)	217, 1099
Eco130I	CCWWGG	2 cut(s)	682, 1227
Eco31I	GGTCTC	1 cut(s)	1203
Eco47I	GGWCC	2 cut(s)	119, 1163
Eco57I	CTGAAG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	1108
EcoRII	CCWGG	3 cut(s)	271, 1055, 1110
EcoT14I	CCWWGG	2 cut(s)	682, 1227
ErhI	CCWWGG	2 cut(s)	682, 1227
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	6 cut(s)	134, 345, 530, 793, 1027, 1262
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	6 cut(s)	130, 341, 526, 789, 1023, 1258
FauI	CCCGC	1 cut(s)	697
FauNDI	CATATG	1 cut(s)	943
Fnu4HI	GCNGC	2 cut(s)	661, 957
FokI	GGATG	4 cut(s)	296, 499, 868, 1073
Fsp4HI	GCNGC	2 cut(s)	661, 957
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	2 cut(s)	661, 957
GsaI	CCCAGC	1 cut(s)	1108
HaeIII	GGCC	2 cut(s)	155, 1110
HapII	CCGG	4 cut(s)	117, 152, 165, 210
Hin1II	CATG	6 cut(s)	134, 345, 530, 793, 1027, 1262
HinfI	GANTC	6 cut(s)	260, 539, 755, 761, 872, 1091
HpaII	CCGG	4 cut(s)	117, 152, 165, 210
HphI	GGTGA	2 cut(s)	19, 1039
Hpy166II	GTNNAC	2 cut(s)	813, 1276
Hpy188I	TCNGA	3 cut(s)	188, 325, 760
Hpy188III	TCNNGA	4 cut(s)	578, 902, 1166, 1216
Hpy8I	GTNNAC	2 cut(s)	813, 1276
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	1163, 1169
HpyCH4III	ACNGT	2 cut(s)	611, 1283
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	7 cut(s)	217, 614, 793, 813, 959, 1004, 1286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 502, 962, 1121
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	6 cut(s)	134, 345, 530, 793, 1027, 1262
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	183, 251, 320, 466, 898
LmnI	GCTCC	2 cut(s)	970, 1135
Lsp1109I	GCAGC	2 cut(s)	647, 943
LweI	GCATC	2 cut(s)	103, 492
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	843
MalI	GATC	5 cut(s)	185, 253, 322, 468, 900
MboI	GATC	5 cut(s)	183, 251, 320, 466, 898
MboII	GAAGA	5 cut(s)	234, 1042, 1060, 1083, 1086
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	815
MluCI	AATT	8 cut(s)	107, 298, 369, 411, 690, 836, 924, 995
MlyI	GAGTC	2 cut(s)	548, 1085
MmeI	TCCRAC	1 cut(s)	567
MreI	CGCCGGCG	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	8 cut(s)	348, 360, 368, 372, 395, 522, 1016, 1119
MspI	CCGG	4 cut(s)	117, 152, 165, 210
MspR9I	CCNGG	3 cut(s)	273, 1057, 1112
MvaI	CCWGG	3 cut(s)	273, 1057, 1112
MwoI	GCNNNNNNNGC	4 cut(s)	161, 502, 962, 1121
NaeI	GCCGGC	1 cut(s)	166
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	5 cut(s)	183, 251, 320, 466, 898
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	6 cut(s)	134, 345, 530, 793, 1027, 1262
NlaIV	GGNNCC	3 cut(s)	966, 1109, 1225
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	3 cut(s)	134, 793, 1262
PacI	TTAATTAA	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	759
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	260, 755, 761, 872
PkrI	GCNGC	2 cut(s)	662, 958
PleI	GAGTC	2 cut(s)	547, 1085
PpsI	GAGTC	2 cut(s)	547, 1085
Psp6I	CCWGG	3 cut(s)	271, 1055, 1110
PspFI	CCCAGC	1 cut(s)	1104
PspGI	CCWGG	3 cut(s)	271, 1055, 1110
PspN4I	GGNNCC	3 cut(s)	966, 1109, 1225
PspPI	GGNCC	3 cut(s)	119, 1108, 1163
PsrI	GAACNNNNNNTAC	2 cut(s)	670, 702
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	3 cut(s)	200, 608, 1277
RsaNI	GTAC	3 cut(s)	199, 607, 1276
SaqAI	TTAA	8 cut(s)	348, 360, 368, 372, 395, 522, 1016, 1119
SatI	GCNGC	2 cut(s)	661, 957
Sau3AI	GATC	5 cut(s)	183, 251, 320, 466, 898
Sau96I	GGNCC	3 cut(s)	119, 1108, 1163
SchI	GAGTC	2 cut(s)	548, 1085
ScrFI	CCNGG	3 cut(s)	273, 1057, 1112
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	2 cut(s)	103, 492
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	119, 1163
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	8 cut(s)	107, 298, 369, 411, 690, 836, 924, 995
SsiI	CCGC	1 cut(s)	704
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	271, 1055, 1110
StyI	CCWWGG	2 cut(s)	682, 1227
TaaI	ACNGT	2 cut(s)	611, 1283
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	1 cut(s)	136
TasI	AATT	8 cut(s)	107, 298, 369, 411, 690, 836, 924, 995
TatI	WGTACW	2 cut(s)	606, 1275
TfiI	GAWTC	4 cut(s)	260, 755, 761, 872
Tru1I	TTAA	8 cut(s)	348, 360, 368, 372, 395, 522, 1016, 1119
Tru9I	TTAA	8 cut(s)	348, 360, 368, 372, 395, 522, 1016, 1119
TscAI	CASTG	5 cut(s)	477, 616, 820, 882, 1086
TseI	GCWGC	2 cut(s)	660, 956
TspDTI	ATGAA	1 cut(s)	662
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	5 cut(s)	477, 616, 820, 882, 1086
VneI	GTGCAC	1 cut(s)	811
VpaK11BI	GGWCC	2 cut(s)	119, 1163
XapI	RAATTY	2 cut(s)	411, 836
XceI	RCATGY	3 cut(s)	134, 793, 1262
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.