Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

9721093 .. 9722259

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGAAACATGCCTTCCCCGGTGGCTCAGTATGGGAAAGAAGAAAAAGATGAGAGAGCAAATGTTATTTCGAATTTGAAGGGGAGAATGAGTGATGGTCGTCGTAGGTGTGGATCAAGTGATTCGCTTGTCCCTGGTCTTGTTGACGATGTAGTTTTGAATTGCCTTGCTTGGGCTTCTAGATCGGATTATGCTTCGCTGTCATGTATTAATACAAGGTTTAATAAGTTAATTAAAAGTGGGTATTTGTATGGGTTGAGGGAGCAGTTGGGAATTGTGGAGCATTGGGTGTATCTGGTGTGTGATTTAAGAGGGTGGGAGGCATTTGATCCAGTGAGAAAGAAATGGATGACATTGCCTAAGATGCCTTGTGATGAGTGTTTCAATCATGCGGATAAGGAGTCTTTAGCTGTAGGAAGTCAGTTGTTGGTTTTTGGCCGCGAACTGTTGGATTTTGCTCTTTGGAAGTACAGTGCAATACATCGTAGCTGGATAAAATGTCAGGGAATGAACCAGCCCCGCTGTTTGTTTGGGTCTGGTAGCCTTGGTTCAATTGCTATTGTTGCGGGTGGGAGTGATAGGAATGGAAATGTTTTGAAATCAGCAGAGATATATGATTCCGTATCGGGTAGGTGGGAGATGCTACCCAACATGCACACACCACGTAGATTGTGTACTGGTTTTTTCTGGGATGGCAAATTCTACGTTATGGGTGGAATGTCAAGTCCTAATGATTCACTGACTTGTGGGGAGGAATATGATCTTGAGACGGGGAAATGGAGGAAAATTGAGGGTATGTATCCATCTGTCAATATAGCTGCACAGGCTCCTCCTCTTTGTGCAGTTGTTGATAACCAATTGTATGCAGTTGAGTATTTAACCAACATGGTGAAGAAGTATGACAAGGGGAAGAACACCTGGGATGTTTTAGGAAGACTTCCAGTGAGGGCTGACTCTTCAAATGGCTGGGGCCTGGCCTTCAAGGCTTGTGGAAAGGAACTTCTTGTCGTGGGTGGGCAACGAGGTCCCGAAGGTGAAGGTATTGTTCTGAACTCATGGTCTCCGAAGTCAGGGATCGATCTGAATGGCACTTTGGATTGGAAAGTTATCGGTGTGAAAGAGCATGTTGGGGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

389

Amino Acids

43.12

Weight (kDa)

8.3

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	137 - 339	1.4e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin	PF13964	155 - 266	2e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	173 - 218	8.5e-09	Kelch motif
Kelch_FKB95	PF25210	188 - 307	2.4e-12	FKB95, Kelch-repeats domain
Kelch_1	PF01344	221 - 266	3.1e-09	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	441
AciI	CCGC	4 cut(s)	392, 439, 520, 566
AclWI	GGATC	3 cut(s)	121, 323, 1082
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	73, 698
AfaI	GTAC	3 cut(s)	470, 676, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	172, 1070
AgsI	TTSAA	7 cut(s)	79, 160, 385, 552, 598, 960, 982
AjnI	CCWGG	3 cut(s)	133, 917, 972
AjuI	GAANNNNNNNTTGG	2 cut(s)	1076, 1108
AluBI	AGCT	3 cut(s)	410, 489, 818
AluI	AGCT	3 cut(s)	410, 489, 818
Alw26I	GTCTC	2 cut(s)	761, 1065
AlwI	GGATC	3 cut(s)	121, 323, 1082
AoxI	GGCC	3 cut(s)	436, 970, 975
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	2 cut(s)	73, 698
AseI	ATTAAT	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	970, 1025
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	901, 1046
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	940
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	3 cut(s)	89, 686, 811
BciT130I	CCWGG	3 cut(s)	135, 919, 974
BciVI	GTATCC	1 cut(s)	810
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	761, 1065
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	983
BisI	GCNGC	2 cut(s)	439, 819
BlsI	GCNGC	2 cut(s)	440, 820
Bme1390I	CCNGG	4 cut(s)	20, 135, 919, 974
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	970, 1025
BmiI	GGNNCC	3 cut(s)	828, 971, 1027
BmrFI	CCNGG	4 cut(s)	20, 135, 919, 974
BmsI	GCATC	2 cut(s)	354, 630
BpiI	GAAGAC	1 cut(s)	940
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	1077
BsaAI	YACGTR	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	1065
BsaJI	CCNNGG	4 cut(s)	18, 133, 544, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 1070
Bse1I	ACTGG	3 cut(s)	332, 682, 941
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	135, 919, 974
BseCI	ATCGAT	1 cut(s)	1077
BseDI	CCNNGG	4 cut(s)	18, 133, 544, 918
BseGI	GGATG	3 cut(s)	354, 697, 928
BseLI	CCNNNNNNNGG	2 cut(s)	172, 1070
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	332, 682, 941
BseRI	GAGGAG	2 cut(s)	819, 822
BseXI	GCAGC	1 cut(s)	805
BseYI	CCCAGC	1 cut(s)	966
BsgI	GTGCAG	2 cut(s)	804, 861
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	438, 972, 977
BshVI	ATCGAT	1 cut(s)	1077
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	116, 1011
BslI	CCNNNNNNNGG	2 cut(s)	172, 1070
BsmAI	GTCTC	2 cut(s)	761, 1065
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	2 cut(s)	116, 1011
BsnI	GGCC	3 cut(s)	438, 972, 977
Bso31I	GGTCTC	1 cut(s)	1065
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	1140
Bsp143I	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
BspACI	CCGC	4 cut(s)	392, 439, 520, 566
BspANI	GGCC	3 cut(s)	438, 972, 977
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	1077
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	828, 971, 1027
BspPI	GGATC	3 cut(s)	121, 323, 1082
BspT104I	TTCGAA	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	1065
BsrDI	GCAATG	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	1140
BsrI	ACTGG	3 cut(s)	332, 682, 941
BssECI	CCNNGG	4 cut(s)	18, 133, 544, 918
BssMI	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	3 cut(s)	135, 919, 974
Bst4CI	ACNGT	3 cut(s)	447, 473, 1148
Bst6I	CTCTTC	1 cut(s)	961
BstAUI	TGTACA	1 cut(s)	1140
BstBAI	YACGTR	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	27, 360
BstF5I	GGATG	3 cut(s)	354, 697, 928
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	6 cut(s)	116, 185, 331, 763, 1077, 1081
BstMAI	GTCTC	2 cut(s)	761, 1065
BstMBI	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
BstMWI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
BstNI	CCWGG	3 cut(s)	135, 919, 974
BstNSI	RCATGY	3 cut(s)	13, 655, 1127
BstSCI	CCNGG	4 cut(s)	18, 133, 917, 972
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	1 cut(s)	940
Bsu15I	ATCGAT	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	438, 972, 977
BsuTUI	ATCGAT	1 cut(s)	1077
BtsCI	GGATG	3 cut(s)	354, 697, 928
BtsIMutI	CAGTG	4 cut(s)	339, 478, 737, 948
Cfr13I	GGNCC	2 cut(s)	970, 1025
ClaI	ATCGAT	1 cut(s)	1077
Csp6I	GTAC	3 cut(s)	469, 675, 1141
CspCI	CAANNNNNGTGG	4 cut(s)	651, 686, 970, 1005
CviAII	CATG	7 cut(s)	10, 204, 389, 652, 886, 1056, 1124
CviQI	GTAC	3 cut(s)	469, 675, 1141
DdeI	CTNAG	2 cut(s)	27, 360
DpnI	GATC	6 cut(s)	115, 184, 330, 762, 1076, 1080
DpnII	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	961
EarI	CTCTTC	1 cut(s)	961
Eco130I	CCWWGG	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	1065
Eco47I	GGWCC	1 cut(s)	1025
EcoO109I	RGGNCCY	2 cut(s)	970, 1025
EcoRII	CCWGG	3 cut(s)	133, 917, 972
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1127
FaqI	GGGAC	2 cut(s)	116, 1011
FatI	CATG	7 cut(s)	9, 203, 388, 651, 885, 1055, 1123
FauI	CCCGC	2 cut(s)	527, 559
Fnu4HI	GCNGC	2 cut(s)	439, 819
FokI	GGATG	3 cut(s)	361, 704, 935
Fsp4HI	GCNGC	2 cut(s)	439, 819
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	439, 819
GsaI	CCCAGC	1 cut(s)	970
HaeIII	GGCC	3 cut(s)	438, 972, 977
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1127
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	5 cut(s)	122, 401, 617, 734, 953
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	901, 1046
Hpy166II	GTNNAC	3 cut(s)	145, 675, 1141
Hpy188I	TCNGA	4 cut(s)	187, 1050, 1065, 1083
Hpy188III	TCNNGA	3 cut(s)	180, 764, 1028
Hpy8I	GTNNAC	3 cut(s)	145, 675, 1141
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	5 cut(s)	24, 73, 988, 1025, 1031
HpyCH4III	ACNGT	3 cut(s)	447, 473, 1148
HpyCH4IV	ACGT	2 cut(s)	664, 705
HpyCH4V	TGCA	6 cut(s)	476, 655, 821, 842, 866, 1151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
HpyF3I	CTNAG	2 cut(s)	27, 360
HpySE526I	ACGT	2 cut(s)	664, 705
Hsp92II	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1127
Kzo9I	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
LmnI	GCTCC	3 cut(s)	262, 280, 832
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	2 cut(s)	354, 630
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	664, 705
MalI	GATC	6 cut(s)	115, 184, 330, 762, 1076, 1080
MboI	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
MboII	GAAGA	5 cut(s)	53, 904, 922, 945, 948
MfeI	CAATTG	2 cut(s)	552, 857
MluCI	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
MlyI	GAGTC	2 cut(s)	410, 947
MmeI	TCCRAC	1 cut(s)	429
MseI	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	4 cut(s)	20, 135, 919, 974
MunI	CAATTG	2 cut(s)	552, 857
MvaI	CCWGG	3 cut(s)	135, 919, 974
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	364, 563, 824, 983
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
NlaIII	CATG	7 cut(s)	13, 207, 392, 655, 889, 1059, 1127
NlaIV	GGNNCC	3 cut(s)	828, 971, 1027
NspI	RCATGY	3 cut(s)	13, 655, 1127
NspV	TTCGAA	1 cut(s)	71
PacI	TTAATTAA	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	122, 617, 734
PkrI	GCNGC	2 cut(s)	440, 820
PleI	GAGTC	2 cut(s)	409, 947
PpsI	GAGTC	2 cut(s)	409, 947
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	1025
PshBI	ATTAAT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	3 cut(s)	133, 917, 972
PspFI	CCCAGC	1 cut(s)	966
PspGI	CCWGG	3 cut(s)	133, 917, 972
PspN4I	GGNNCC	3 cut(s)	828, 971, 1027
PspPI	GGNCC	2 cut(s)	970, 1025
PspPPI	RGGWCCY	1 cut(s)	1025
PsrI	GAACNNNNNNTAC	2 cut(s)	532, 564
RsaI	GTAC	3 cut(s)	470, 676, 1142
RsaNI	GTAC	3 cut(s)	469, 675, 1141
SaqAI	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
SatI	GCNGC	2 cut(s)	439, 819
Sau3AI	GATC	6 cut(s)	113, 182, 328, 760, 1074, 1078
Sau96I	GGNCC	2 cut(s)	970, 1025
SchI	GAGTC	2 cut(s)	410, 947
ScrFI	CCNGG	4 cut(s)	20, 135, 919, 974
SfaNI	GCATC	2 cut(s)	354, 630
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	1025
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
SsiI	CCGC	4 cut(s)	392, 439, 520, 566
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	18, 133, 917, 972
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	3 cut(s)	447, 473, 1148
TaiI	ACGT	2 cut(s)	667, 708
TaqI	TCGA	2 cut(s)	71, 1077
TasI	AATT	8 cut(s)	73, 160, 231, 273, 552, 698, 786, 857
TatI	WGTACW	3 cut(s)	468, 674, 1140
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	122, 617, 734
Tru1I	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
Tru9I	TTAA	6 cut(s)	210, 222, 230, 234, 308, 878
TscAI	CASTG	4 cut(s)	339, 478, 744, 948
TseI	GCWGC	1 cut(s)	818
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	4 cut(s)	339, 478, 744, 948
VpaK11BI	GGWCC	1 cut(s)	1025
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	2 cut(s)	73, 698
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	3 cut(s)	13, 655, 1127
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.