Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

25635960 .. 25638373

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACTTCTCCTTTGGATAATCATACAATGGAAGAGAAGGAAGAGGGAGTAAATACTATTGCGAAGGTGAATTTGAAGGGTAGAATGAATGATGGTCGCCGAAGACACGGATCAAGTGATTCTTTTTTCCCTGGTCTGGTTGATGATGTAGCTCTGCATTGCCTTGCTTGGACTCCTAGATCAGCTTATGCTTCACTGTCATGTACTAATAGAAGGTTTAATAAGTTAATTAAAAGTGAGTATTTGTATGGGTTGAGGAAGCAGGTGGGAATTGAGGAGCATTGGGTGTATCTGGTTTGTGATTTGAGAGGGTGGGAAGCGTATGATCCGATGAGAGAGAAGTGGATGACGTTGCCTAAGGTGCCTTGTGATGAGTGTTTCAACCATGCTGACAAGGAGTCTTTGGCTGTGGGAACTCAGTTGCTGGTTTTTGGTCGTGAATTGCTGGATTTTGCTATTTGGAAGTATAGTGTGATACATCATAGTTGGGTTAAATGTGAGGGAATGAGCAAGCCTCGCTGTTTGTTCGGGTCTGGCAGCCTTGGTTCTATTGCTATTGTTGCGGGCGGGAGTGACATAAATGGAAATGTTTTGAAGTCAGCAGAGTTATATGATTCTGTATCTGGTAGGTGGAAAGTCTTACCTGATTTGCACACACCGCGTAGATTGTGCTCTGGTTTCTTCATGGACAACAAGTTCTATGTCATTGGTGGGATGTCAAGTCCCTTTGATTCACTGACTTGTGGCGAGGAGTATGATCTGGAGACAGGGAAATGGAGGAAAATTGAGGGTATGTATCCATATGTCAATAGGGCAGCACAGGCTCCTCCTCTTATCGCAGTAGTGGATAACCAACTATATGCAGTCGAGTATGAAACCAATATGGTTAAGAAGTACGACAAGGAGAAGAACACTTGGGATGTTATAGGAAGACTTCCAGTTAGGGCTGACTTTTCAAATGGCTGGGGCCTGGCTTTCAAGGCTTGTGGAAAGGAACTTCTTGTTGTGGGTGGCCAAAGAGGTCCGGAAGGCGAAAGTATTGTCCTGAACTCTTGGAGTCCAAAGTCAGGGGTTAAGAATGGTACCTTGGATTGGAAGGTGATTGGTCAAAAAGACAATGTGGGTGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

386

Amino Acids

43.3

Weight (kDa)

7.5

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	153 - 265	1.7e-08	Calicin, beta-propeller domain
Kelch_FKB95	PF25210	187 - 260	1.8e-06	FKB95, Kelch-repeats domain
Kelch_1	PF01344	220 - 265	8.6e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	1082
AccB1I	GGYRCC	2 cut(s)	361, 1082
AccII	CGCG	1 cut(s)	661
AccIII	TCCGGA	1 cut(s)	1024
AciI	CCGC	3 cut(s)	563, 567, 659
AclWI	GGATC	2 cut(s)	118, 320
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	4 cut(s)	205, 896, 1084, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
AgsI	TTSAA	5 cut(s)	76, 382, 595, 957, 979
AhdI	GACNNNNNGTC	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	130, 969
AjuI	GAANNNNNNNTTGG	2 cut(s)	1070, 1102
AloI	GAACNNNNNNTCC	2 cut(s)	680, 712
AluBI	AGCT	2 cut(s)	152, 185
AluI	AGCT	2 cut(s)	152, 185
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	2 cut(s)	118, 320
AlwNI	CAGNNNCTG	1 cut(s)	424
Aor13HI	TCCGGA	1 cut(s)	1024
AoxI	GGCC	2 cut(s)	967, 1012
ApeKI	GCWGC	2 cut(s)	537, 815
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 1026, 1058
Asp718I	GGTACC	1 cut(s)	1082
AspS9I	GGNCC	2 cut(s)	967, 1022
AsuHPI	GGTGA	2 cut(s)	79, 1111
AvaII	GGWCC	1 cut(s)	1022
AxyI	CCTNAGG	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	1014
BanI	GGYRCC	2 cut(s)	361, 1082
BbsI	GAAGAC	2 cut(s)	109, 937
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	549, 827
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	132, 971
BciVI	GTATCC	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	807
BisI	GCNGC	2 cut(s)	538, 816
BlsI	GCNGC	2 cut(s)	539, 817
Bme1390I	CCNGG	2 cut(s)	132, 971
Bme18I	GGWCC	1 cut(s)	1022
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	967, 1022
BmiI	GGNNCC	4 cut(s)	363, 825, 968, 1084
BmrFI	CCNGG	2 cut(s)	132, 971
BpiI	GAAGAC	2 cut(s)	109, 937
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	130, 541, 1086
BsaWI	WCCGGW	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
Bse1I	ACTGG	1 cut(s)	938
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	1024
BseBI	CCWGG	2 cut(s)	132, 971
BseDI	CCNNGG	3 cut(s)	130, 541, 1086
BseGI	GGATG	3 cut(s)	351, 720, 925
BseLI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	4 cut(s)	290, 764, 816, 819
BseXI	GCAGC	2 cut(s)	549, 827
BseYI	CCCAGC	1 cut(s)	963
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	2 cut(s)	969, 1014
BshNI	GGYRCC	2 cut(s)	361, 1082
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	2 cut(s)	969, 1014
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp13I	TCCGGA	1 cut(s)	1024
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	4 cut(s)	110, 179, 325, 757
BspACI	CCGC	3 cut(s)	563, 567, 659
BspANI	GGCC	2 cut(s)	969, 1014
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	1024
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	363, 825, 968, 1084
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	118, 320
BspT107I	GGYRCC	2 cut(s)	361, 1082
BsrDI	GCAATG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	3 cut(s)	130, 541, 1086
BssMI	GATC	4 cut(s)	110, 179, 325, 757
BssT1I	CCWWGG	2 cut(s)	541, 1086
Bst2UI	CCWGG	2 cut(s)	132, 971
Bst4CI	ACNGT	2 cut(s)	198, 1142
Bst6I	CTCTTC	2 cut(s)	27, 36
BstAUI	TGTACA	1 cut(s)	1134
BstC8I	GCNNGC	2 cut(s)	512, 565
BstDEI	CTNAG	2 cut(s)	357, 417
BstF5I	GGATG	3 cut(s)	351, 720, 925
BstFNI	CGCG	1 cut(s)	661
BstKTI	GATC	4 cut(s)	113, 182, 328, 760
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	4 cut(s)	110, 179, 325, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
BstNI	CCWGG	2 cut(s)	132, 971
BstSCI	CCNGG	2 cut(s)	130, 969
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	549, 827
BstV2I	GAAGAC	2 cut(s)	109, 937
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	969, 1014
BtsCI	GGATG	3 cut(s)	351, 720, 925
BtsIMutI	CAGTG	2 cut(s)	194, 734
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	512, 565
CaiI	CAGNNNCTG	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	967, 1022
Csp6I	GTAC	4 cut(s)	204, 895, 1083, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	3 cut(s)	201, 386, 685
CviQI	GTAC	4 cut(s)	204, 895, 1083, 1135
DdeI	CTNAG	2 cut(s)	357, 417
DpnI	GATC	4 cut(s)	112, 181, 327, 759
DpnII	GATC	4 cut(s)	110, 179, 325, 757
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	1012
Eam1104I	CTCTTC	2 cut(s)	27, 36
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	2 cut(s)	27, 36
Eco130I	CCWWGG	2 cut(s)	541, 1086
Eco47I	GGWCC	1 cut(s)	1022
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	130, 969
EcoT14I	CCWWGG	2 cut(s)	541, 1086
ErhI	CCWWGG	2 cut(s)	541, 1086
FaeI	CATG	3 cut(s)	204, 389, 688
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	200, 385, 684
FauI	CCCGC	2 cut(s)	556, 560
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	538, 816
FokI	GGATG	3 cut(s)	358, 727, 932
Fsp4HI	GCNGC	2 cut(s)	538, 816
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	538, 816
GsaI	CCCAGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	969, 1014
HapII	CCGG	1 cut(s)	1025
Hin1II	CATG	3 cut(s)	204, 389, 688
HinfI	GANTC	6 cut(s)	119, 172, 398, 614, 731, 1057
HpaII	CCGG	1 cut(s)	1025
HphI	GGTGA	2 cut(s)	79, 1111
Hpy166II	GTNNAC	1 cut(s)	1135
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	437, 761, 1025, 1045
Hpy8I	GTNNAC	1 cut(s)	1135
HpyAV	CCTTC	6 cut(s)	31, 58, 70, 207, 1022, 1090
HpyCH4III	ACNGT	2 cut(s)	198, 1142
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	157, 652, 863, 1145
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
HpyF3I	CTNAG	2 cut(s)	357, 417
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	204, 389, 688
Kpn2I	TCCGGA	1 cut(s)	1024
KpnI	GGTACC	1 cut(s)	1086
Kzo9I	GATC	4 cut(s)	110, 179, 325, 757
LmnI	GCTCC	2 cut(s)	277, 829
Lsp1109I	GCAGC	2 cut(s)	549, 827
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	4 cut(s)	112, 181, 327, 759
MboI	GATC	4 cut(s)	110, 179, 325, 757
MboII	GAAGA	6 cut(s)	44, 53, 114, 673, 919, 942
MhlI	GDGCHC	1 cut(s)	674
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	5 cut(s)	70, 228, 270, 440, 783
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	3 cut(s)	166, 407, 1066
Mox20I	TGGCCA	1 cut(s)	1014
MroI	TCCGGA	1 cut(s)	1024
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	6 cut(s)	219, 227, 231, 492, 888, 1074
MslI	CAYNNNNRTG	1 cut(s)	199
Msp20I	TGGCCA	1 cut(s)	1014
MspI	CCGG	1 cut(s)	1025
MspR9I	CCNGG	2 cut(s)	132, 971
MvaI	CCWGG	2 cut(s)	132, 971
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	4 cut(s)	110, 179, 325, 757
NlaIII	CATG	3 cut(s)	204, 389, 688
NlaIV	GGNNCC	4 cut(s)	363, 825, 968, 1084
NmuCI	GTSAC	1 cut(s)	572
PacI	TTAATTAA	1 cut(s)	231
PaqCI	CACCTGC	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	119, 614, 731
PkrI	GCNGC	2 cut(s)	539, 817
PleI	GAGTC	3 cut(s)	166, 406, 1065
PpsI	GAGTC	3 cut(s)	166, 406, 1065
Psp6I	CCWGG	2 cut(s)	130, 969
PspFI	CCCAGC	1 cut(s)	963
PspGI	CCWGG	2 cut(s)	130, 969
PspN4I	GGNNCC	4 cut(s)	363, 825, 968, 1084
PspPI	GGNCC	2 cut(s)	967, 1022
PstNI	CAGNNNCTG	1 cut(s)	424
RsaI	GTAC	4 cut(s)	205, 896, 1084, 1136
RsaNI	GTAC	4 cut(s)	204, 895, 1083, 1135
RseI	CAYNNNNRTG	1 cut(s)	199
SaqAI	TTAA	6 cut(s)	219, 227, 231, 492, 888, 1074
SatI	GCNGC	2 cut(s)	538, 816
Sau3AI	GATC	4 cut(s)	110, 179, 325, 757
Sau96I	GGNCC	2 cut(s)	967, 1022
SchI	GAGTC	3 cut(s)	166, 407, 1066
ScrFI	CCNGG	2 cut(s)	132, 971
SduI	GDGCHC	1 cut(s)	674
SinI	GGWCC	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	70, 228, 270, 440, 783
SsiI	CCGC	3 cut(s)	563, 567, 659
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	130, 969
StyI	CCWWGG	2 cut(s)	541, 1086
TaaI	ACNGT	2 cut(s)	198, 1142
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	867
TasI	AATT	5 cut(s)	70, 228, 270, 440, 783
TatI	WGTACW	2 cut(s)	203, 1134
TfiI	GAWTC	3 cut(s)	119, 614, 731
Tru1I	TTAA	6 cut(s)	219, 227, 231, 492, 888, 1074
Tru9I	TTAA	6 cut(s)	219, 227, 231, 492, 888, 1074
TscAI	CASTG	2 cut(s)	201, 741
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	537, 815
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	101, 673, 888
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	201, 741
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.