Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010409

Physical Location & Seq

Genomic Coordinates Forward (+)

10398228 .. 10400183

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1116300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGAAACATGCCTTCCCAGTTGGTTAATTATACGAAGGAAGAAAAGGAAGAAAAGGAAGAGAGAGTAAATGTTATTTCGAATGTGACTTTGAAGGGGACAACGAATGATGGTCGTCGTAGGTATGGATCAAGTGACTCGCTTGTCCCCGGTCTTGTTGACGATGTAGCTTTGAATTGCCTCGCTTGGGCTTCTAGATGGGATTATGCTTCTCTGTCGTGTATTAATACAAGGTTTAATAAGTTAATTAAAAGTGGGTATTTGTATGGGTTGAGAGAGCAGTTGGGAATTCTGGAGCATTGGGTGTATCTGGTGTGTGATTTAAGAGGGTGGGAGGCATTTGATCCAATGGGAAACAAATGGATGACGTTGCCTAAGATGCCTTGTGATGAGTGTTTCAATCATGCAGATAAGGAGTCTTTGGCCATGGGAAGTCAGTTGTTGGTTTTTGGTCGTGAACTGTTGGATTTTGCGATTTGGAAGTACAGTGCAATACATCGTAGCTGGATAAAATGTTGGGGAATGAACCAACCTCGCTGTTTGTTTGGGTCTGGTAGCCTTGGTTCAATTGCTATTGTTGCGGGTGGGAGTGATAGAAATGGAAATGTTTTGAAATCAGCGGAGATATATGATTCTGTATCGGGTAGGTGGGAAATGCTACCCAACATGCACACTCCACGTAGATTGTGCACTGGTTTTTTTTGGGATGGCAAGTTCTATGTTATGGGTGGGATGTCAAGTCCTACTGACTCGCTTACTTGTGGGGAGGAATATGATCTCGATATGGGGAAATGGAGGAAAATTGAGGGTATGTATCCATCTGTCAATAGGGCTGCACAGGCTCCTCCACTTTGTGCAGTTGTTGATAACCAATTGTATGCAGTTGAGTATTTAACCAACATGGTGAAGAAGTATGACAAGGGGAAGAACACCTGGGATGTTTTAGGAAGACTTCCAGTGAGGGCTGACTCTTCAAACGGCTGGGGCCTGGCCTTCAAGGCTTGTGGAAAGGAACTTCTCGTTGTGGGCGGGCAAAGAGGTCCTGAAGGTGAAGGTATTGTTCTGAACACATGGTCTCCAAAGTCAGGGGTCAAGAATGGCACCTTGGATTGGAAAGTTATCGGTGTGAAAGAGCATGTTGGGGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

393

Amino Acids

43.89

Weight (kDa)

8.14

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	160 - 271	3.5e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	178 - 223	8.6e-09	Kelch motif
Kelch_FKB95	PF25210	193 - 312	1.5e-10	FKB95, Kelch-repeats domain
Kelch_1	PF01344	226 - 271	5.7e-07	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60570 AT5G60570 AT5G60570
fragaria_vesca	FvH4_3g32533 FvH4_3g32533
malus_domestica	MD03G1116300.v1.1 MD11G1134500.v1.1
prunus_persica	Prupe.6G100400_v2.0.a1 Prupe.6G100400_v2.0.a1
pyrus_communis	pycom11g11160
rosa_chinensis	RchiOBHm_Chr5g0059621
rosa_laevigata	RLG00000035311
rosa_multiflora	Rmu_sc0009491.1_g000001 Rmu_sc0015758.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020990
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388800 Rh5BG400400 Rh5CG424600 Rh5DG416700
rosa_wichuraiana	Rw5G036610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	1100
AciI	CCGC	3 cut(s)	581, 620, 1029
AclWI	GGATC	2 cut(s)	136, 338
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	1065
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	485, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	187, 1085, 1110
AgsI	TTSAA	7 cut(s)	94, 175, 400, 567, 613, 975, 997
AjnI	CCWGG	2 cut(s)	932, 987
AjuI	GAANNNNNNNTTGG	2 cut(s)	1088, 1120
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	2 cut(s)	170, 504
AluI	AGCT	2 cut(s)	170, 504
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	1 cut(s)	1080
Alw44I	GTGCAC	1 cut(s)	688
AlwI	GGATC	2 cut(s)	136, 338
AoxI	GGCC	3 cut(s)	423, 985, 990
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	1 cut(s)	288
AseI	ATTAAT	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	985, 1040
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	916, 1061
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	1040
BaeGI	GKGCMC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	1100
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	4 cut(s)	104, 192, 701, 826
BceAI	ACGGC	1 cut(s)	994
BciT130I	CCWGG	2 cut(s)	934, 989
BciVI	GTATCC	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	1080
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	825
BglI	GCCNNNNNGGC	1 cut(s)	998
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
Bme1390I	CCNGG	3 cut(s)	150, 934, 989
Bme18I	GGWCC	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	985, 1040
BmiI	GGNNCC	3 cut(s)	843, 986, 1102
BmrFI	CCNGG	3 cut(s)	150, 934, 989
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	955
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	680
BsaI	GGTCTC	1 cut(s)	1080
BsaJI	CCNNGG	5 cut(s)	148, 426, 559, 933, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	1060, 1090
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 1085, 1110
Bse1I	ACTGG	3 cut(s)	19, 697, 956
BseBI	CCWGG	2 cut(s)	934, 989
BseDI	CCNNGG	5 cut(s)	148, 426, 559, 933, 1104
BseGI	GGATG	4 cut(s)	369, 712, 738, 943
BseLI	CCNNNNNNNGG	3 cut(s)	187, 1085, 1110
BseNI	ACTGG	3 cut(s)	19, 697, 956
BseRI	GAGGAG	1 cut(s)	834
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	820
BseYI	CCCAGC	1 cut(s)	981
BsgI	GTGCAG	2 cut(s)	819, 876
BshFI	GGCC	3 cut(s)	425, 987, 992
BshNI	GGYRCC	1 cut(s)	1100
BsiHKAI	GWGCWC	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	112, 131
BslI	CCNNNNNNNGG	3 cut(s)	187, 1085, 1110
BsmAI	GTCTC	1 cut(s)	1080
BsmFI	GGGAC	2 cut(s)	112, 131
BsnI	GGCC	3 cut(s)	425, 987, 992
Bso31I	GGTCTC	1 cut(s)	1080
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp1407I	TGTACA	1 cut(s)	1152
Bsp143I	GATC	3 cut(s)	128, 343, 775
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	3 cut(s)	581, 620, 1029
BspANI	GGCC	3 cut(s)	425, 987, 992
BspLI	GGNNCC	3 cut(s)	843, 986, 1102
BspPI	GGATC	2 cut(s)	136, 338
BspT104I	TTCGAA	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	1100
BspTNI	GGTCTC	1 cut(s)	1080
BsrGI	TGTACA	1 cut(s)	1152
BsrI	ACTGG	3 cut(s)	19, 697, 956
BssECI	CCNNGG	5 cut(s)	148, 426, 559, 933, 1104
BssMI	GATC	3 cut(s)	128, 343, 775
BssT1I	CCWWGG	3 cut(s)	426, 559, 1104
Bst2UI	CCWGG	2 cut(s)	934, 989
Bst4CI	ACNGT	3 cut(s)	462, 488, 1160
Bst6I	CTCTTC	2 cut(s)	54, 976
BstAUI	TGTACA	1 cut(s)	1152
BstBAI	YACGTR	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	1031
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	369, 712, 738, 943
BstKTI	GATC	3 cut(s)	131, 346, 778
BstMAI	GTCTC	1 cut(s)	1080
BstMBI	GATC	3 cut(s)	128, 343, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	379, 578, 839, 998
BstNI	CCWGG	2 cut(s)	934, 989
BstNSI	RCATGY	3 cut(s)	13, 670, 1139
BstSCI	CCNGG	3 cut(s)	148, 932, 987
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	1 cut(s)	820
BstV2I	GAAGAC	1 cut(s)	955
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	425, 987, 992
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	369, 712, 738, 943
BtsIMutI	CAGTG	3 cut(s)	493, 690, 963
Cac8I	GCNNGC	1 cut(s)	1031
Cfr13I	GGNCC	2 cut(s)	985, 1040
Csp6I	GTAC	2 cut(s)	484, 1153
CspCI	CAANNNNNGTGG	4 cut(s)	666, 701, 985, 1020
CviAII	CATG	7 cut(s)	10, 404, 427, 667, 901, 1071, 1136
CviQI	GTAC	2 cut(s)	484, 1153
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	130, 345, 777
DpnII	GATC	3 cut(s)	128, 343, 775
DraIII	CACNNNGTG	1 cut(s)	854
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	54, 976
EarI	CTCTTC	2 cut(s)	54, 976
Eco130I	CCWWGG	3 cut(s)	426, 559, 1104
Eco31I	GGTCTC	1 cut(s)	1080
Eco47I	GGWCC	1 cut(s)	1040
Eco57I	CTGAAG	1 cut(s)	1065
EcoO109I	RGGNCCY	2 cut(s)	985, 1040
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	932, 987
EcoT14I	CCWWGG	3 cut(s)	426, 559, 1104
ErhI	CCWWGG	3 cut(s)	426, 559, 1104
FaeI	CATG	7 cut(s)	13, 407, 430, 670, 904, 1074, 1139
FaqI	GGGAC	2 cut(s)	112, 131
FatI	CATG	7 cut(s)	9, 403, 426, 666, 900, 1070, 1135
FauI	CCCGC	2 cut(s)	574, 1022
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	4 cut(s)	376, 719, 745, 950
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	834
GsaI	CCCAGC	1 cut(s)	985
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	425, 987, 992
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	7 cut(s)	13, 407, 430, 670, 904, 1074, 1139
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	5 cut(s)	137, 416, 632, 749, 968
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	916, 1061
Hpy166II	GTNNAC	4 cut(s)	160, 458, 690, 1153
Hpy188I	TCNGA	1 cut(s)	1065
Hpy188III	TCNNGA	6 cut(s)	195, 293, 455, 779, 1043, 1093
Hpy8I	GTNNAC	4 cut(s)	160, 458, 690, 1153
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	6 cut(s)	24, 31, 88, 1003, 1040, 1046
HpyCH4III	ACNGT	3 cut(s)	462, 488, 1160
HpyCH4IV	ACGT	2 cut(s)	368, 679
HpyCH4V	TGCA	8 cut(s)	407, 491, 670, 690, 836, 857, 881, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	379, 578, 839, 998
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	368, 679
Hsp92II	CATG	7 cut(s)	13, 407, 430, 670, 904, 1074, 1139
Kzo9I	GATC	3 cut(s)	128, 343, 775
LmnI	GCTCC	2 cut(s)	295, 847
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	368, 679
MaeIII	GTNAC	2 cut(s)	85, 134
MalI	GATC	3 cut(s)	130, 345, 777
MboI	GATC	3 cut(s)	128, 343, 775
MboII	GAAGA	7 cut(s)	53, 62, 71, 919, 937, 960, 963
MfeI	CAATTG	2 cut(s)	567, 872
MhlI	GDGCHC	1 cut(s)	692
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	7 cut(s)	28, 175, 246, 288, 567, 801, 872
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	4 cut(s)	131, 425, 743, 962
MmeI	TCCRAC	1 cut(s)	444
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	7 cut(s)	27, 225, 237, 245, 249, 323, 893
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	150, 934, 989
MunI	CAATTG	2 cut(s)	567, 872
MvaI	CCWGG	2 cut(s)	934, 989
MwoI	GCNNNNNNNGC	4 cut(s)	379, 578, 839, 998
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	128, 343, 775
NlaIII	CATG	7 cut(s)	13, 407, 430, 670, 904, 1074, 1139
NlaIV	GGNNCC	3 cut(s)	843, 986, 1102
NmuCI	GTSAC	2 cut(s)	85, 134
NspI	RCATGY	3 cut(s)	13, 670, 1139
NspV	TTCGAA	1 cut(s)	80
PacI	TTAATTAA	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	632
PkrI	GCNGC	1 cut(s)	835
PleI	GAGTC	4 cut(s)	131, 424, 743, 962
PpsI	GAGTC	4 cut(s)	131, 424, 743, 962
Ppu21I	YACGTR	1 cut(s)	680
PpuMI	RGGWCCY	1 cut(s)	1040
PshBI	ATTAAT	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	932, 987
PspFI	CCCAGC	1 cut(s)	981
PspGI	CCWGG	2 cut(s)	932, 987
PspN4I	GGNNCC	3 cut(s)	843, 986, 1102
PspPI	GGNCC	2 cut(s)	985, 1040
PspPPI	RGGWCCY	1 cut(s)	1040
PsrI	GAACNNNNNNTAC	2 cut(s)	547, 579
RsaI	GTAC	2 cut(s)	485, 1154
RsaNI	GTAC	2 cut(s)	484, 1153
SaqAI	TTAA	7 cut(s)	27, 225, 237, 245, 249, 323, 893
SatI	GCNGC	1 cut(s)	834
Sau3AI	GATC	3 cut(s)	128, 343, 775
Sau96I	GGNCC	2 cut(s)	985, 1040
SchI	GAGTC	4 cut(s)	131, 425, 743, 962
ScrFI	CCNGG	3 cut(s)	150, 934, 989
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	1040
Sse9I	AATT	7 cut(s)	28, 175, 246, 288, 567, 801, 872
SsiI	CCGC	3 cut(s)	581, 620, 1029
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	148, 932, 987
StyI	CCWWGG	3 cut(s)	426, 559, 1104
TaaI	ACNGT	3 cut(s)	462, 488, 1160
TaiI	ACGT	2 cut(s)	371, 682
TaqI	TCGA	2 cut(s)	80, 780
TasI	AATT	7 cut(s)	28, 175, 246, 288, 567, 801, 872
TatI	WGTACW	2 cut(s)	483, 1152
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	7 cut(s)	27, 225, 237, 245, 249, 323, 893
Tru9I	TTAA	7 cut(s)	27, 225, 237, 245, 249, 323, 893
TscAI	CASTG	3 cut(s)	493, 697, 963
TseFI	GTSAC	2 cut(s)	85, 134
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	2 cut(s)	85, 134
TspDTI	ATGAA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	493, 697, 963
VneI	GTGCAC	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	1040
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	3 cut(s)	13, 670, 1139
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.