AT5G60980

nuclear transport factor 2 (NTF2) family protein RNA recognition motif (RRM)-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24543136 .. 24546352
3217 bp
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UTR
Exon/CDS
Intron
AT5G60980.1

Sequence Viewer

Length: 1380 bp
ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTGGAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCATCGGTTTTATCAAGATTCGAGCTTTTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAAGCGATCAACGACAAGATTCTGTCGTTGAAATATGAAGACTACACGGCTGAGATAGAAACTGCTGATGCTCAGGAGTCTCATGAGAGAGGTGTTATTGTGCTGGTTACAGGACGCTTAACCGGGAACGATAATGTTAGGAAGAAGTTTAGTCAATCTTTTTTCTTGGCTCCACAAGACAAAGGATACTTTGTCTTAAACGACGTGTTTCGATTCCTTGAGGAGAAAGAGGTGACTGCACAAGCCCGCTCTGTCCCCATCAATGGAACCACTAGGGATGTTCAGGCTCCTATTGAACCAGAACGTGTTGTTGTTAGTCACGAGCCCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGAAGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGTTGTTGACGTTGAGCCTATTGAACCTCCCACTCAAATAAGTCATAATGAAATCTTATCAGTGCCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAGTCCAGCACCAACAACACACGTTGCTAGAAACAAGCCAAGACCAGCTCCAGTCAACCAGAAGCTGACCGCGCCTCCTGCTGAGCCTGCAGCAAGACCCGAGGCTTCAGCTCATGAGAATGTTCCGAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTTGCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAAGCATGAGGGGATTCAAGTCAGAAGCAACAAGCAAGGTTTCTGTTTTGGTTTTGTGGAATTTGAAACATCTAGCGGAAAGCAAAGTGCCCTCGAGGCCTCACCAGTTACAATTGGAGATCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGAGGCAACAATGGAGGTAGCAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGCTTCAAAGGAGGACGCGGTGGTGGGGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACCAAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGGGTTCCTCAAAACGGAGGAGGTGGAAGAGGAGGCCGCGGAGAAGGAGGTCGTGGTGGAGCTCGAGGTGGTGGTTCATCTTGA

Protein Analysis

459

Amino Acids

49.41

Weight (kDa)

5.66

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 15 - 131 1.5e-35 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 295 - 352 4.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 1277
AccBSI CCGCTC 1 cut(s) 426
AccI GTMKAC 1 cut(s) 1252
AccII CGCG 3 cut(s) 788, 1200, 1335
AccIII TCCGGA 1 cut(s) 1157
AciI CCGC 7 cut(s) 424, 560, 786, 1032, 1200, 1333, 1335
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 2 cut(s) 895, 1016
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 1 cut(s) 1151
AfiI CCNNNNNNNGG 4 cut(s) 29, 440, 1277, 1310
AflIII ACRYGT 3 cut(s) 381, 481, 736
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 9 cut(s) 208, 473, 620, 696, 929, 940, 974, 1022, 1189
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 9 cut(s) 17, 126, 764, 781, 827, 1085, 1185, 1263, 1358
AluI AGCT 9 cut(s) 17, 126, 764, 781, 827, 1085, 1185, 1263, 1358
Alw21I GWGCWC 2 cut(s) 1265, 1360
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 781
Ama87I CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
Aor13HI TCCGGA 1 cut(s) 1157
AoxI GGCC 2 cut(s) 1053, 1330
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 2 cut(s) 895, 1016
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 790
AsuC2I CCSGG 2 cut(s) 93, 301
AsuHPI GGTGA 4 cut(s) 74, 421, 1050, 1250
AsuII TTCGAA 1 cut(s) 892
AvaI CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
BaeGI GKGCMC 1 cut(s) 1048
BanII GRGCYC 3 cut(s) 504, 1265, 1360
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 1265, 1360
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 818
BccI CCATC 2 cut(s) 443, 866
BceAI ACGGC 2 cut(s) 240, 886
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 356
BcnI CCSGG 2 cut(s) 93, 301
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 4 cut(s) 18, 450, 744, 1029
BfmI CTRYAG 1 cut(s) 804
BfuI GTATCC 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 1052
BglII AGATCT 1 cut(s) 544
BisI GCNGC 2 cut(s) 807, 1333
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 2 cut(s) 808, 1334
Bme1390I CCNGG 3 cut(s) 30, 93, 301
BmeT110I CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
BmgBI CACGTC 1 cut(s) 382
BmiI GGNNCC 4 cut(s) 348, 445, 465, 1302
BmrFI CCNGG 3 cut(s) 30, 93, 301
BmsI GCATC 2 cut(s) 235, 661
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 3 cut(s) 36, 249, 678
Bpu1102I GCTNAGC 1 cut(s) 798
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 3 cut(s) 416, 648, 686
BpuMI CCSGG 2 cut(s) 93, 301
BsaJI CCNNGG 4 cut(s) 28, 504, 816, 1333
BsaWI WCCGGW 2 cut(s) 149, 1157
BsaXI ACNNNNNCTCC 4 cut(s) 585, 615, 775, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 440, 1277, 1310
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 3 cut(s) 521, 767, 1061
BseAI TCCGGA 1 cut(s) 1157
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 4 cut(s) 28, 504, 816, 1333
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 4 cut(s) 29, 440, 1277, 1310
BseMII CTCAG 4 cut(s) 27, 219, 263, 789
BseNI ACTGG 3 cut(s) 521, 767, 1061
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 818
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 3 cut(s) 788, 1200, 1335
BshFI GGCC 2 cut(s) 1055, 1332
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 1265, 1360
BsiHKCI CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
BsiSI CCGG 4 cut(s) 93, 150, 300, 1158
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 4 cut(s) 29, 440, 1277, 1310
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 2 cut(s) 1055, 1332
BsoBI CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 4 cut(s) 504, 1048, 1265, 1360
Bsp13I TCCGGA 1 cut(s) 1157
Bsp143I GATC 4 cut(s) 183, 544, 571, 1075
Bsp1720I GCTNAGC 1 cut(s) 798
BspACI CCGC 7 cut(s) 424, 560, 786, 1032, 1200, 1333, 1335
BspANI GGCC 2 cut(s) 1055, 1332
BspCNI CTCAG 4 cut(s) 28, 220, 262, 790
BspEI TCCGGA 1 cut(s) 1157
BspFNI CGCG 3 cut(s) 788, 1200, 1335
BspHI TCATGA 2 cut(s) 259, 829
BspLI GGNNCC 4 cut(s) 348, 445, 465, 1302
BspMAI CTGCAG 1 cut(s) 808
BspPI GGATC 1 cut(s) 566
BspT104I TTCGAA 1 cut(s) 892
BsrBI CCGCTC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 3 cut(s) 521, 767, 1061
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 28, 504, 816, 1333
BssMI GATC 4 cut(s) 183, 544, 571, 1075
BssSI CACGAG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 5 cut(s) 924, 1156, 1207, 1222, 1318
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 3 cut(s) 180, 424, 804
BstDEI CTNAG 5 cut(s) 36, 228, 249, 678, 798
BstDSI CCRYGG 1 cut(s) 1333
BstEII GGTNACC 1 cut(s) 1289
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 3 cut(s) 788, 1200, 1335
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 4 cut(s) 186, 547, 574, 1078
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 4 cut(s) 183, 544, 571, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 787, 794, 803, 1052
BstNI CCWGG 1 cut(s) 30
BstPAI GACNNNNGTC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 1289
BstSCI CCNGG 3 cut(s) 28, 91, 299
BstSFI CTRYAG 1 cut(s) 804
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 3 cut(s) 788, 1200, 1335
BstV1I GCAGC 1 cut(s) 818
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 2 cut(s) 1055, 1332
BtgI CCRYGG 1 cut(s) 1333
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 3 cut(s) 180, 424, 804
CaiI CAGNNNCTG 1 cut(s) 781
CciI TCATGA 2 cut(s) 259, 829
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 1336
CseI GACGC 2 cut(s) 300, 1206
Csp6I GTAC 1 cut(s) 1150
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 4 cut(s) 260, 830, 854, 962
CviQI GTAC 1 cut(s) 1150
DdeI CTNAG 5 cut(s) 36, 228, 249, 678, 798
DpnI GATC 4 cut(s) 185, 546, 573, 1077
DpnII GATC 4 cut(s) 183, 544, 571, 1075
Eam1104I CTCTTC 5 cut(s) 924, 1156, 1207, 1222, 1318
EarI CTCTTC 5 cut(s) 924, 1156, 1207, 1222, 1318
EciI GGCGGA 1 cut(s) 575
Ecl136II GAGCTC 2 cut(s) 1263, 1358
Eco147I AGGCCT 1 cut(s) 1055
Eco24I GRGCYC 3 cut(s) 504, 1265, 1360
Eco53kI GAGCTC 2 cut(s) 1263, 1358
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 5 cut(s) 503, 515, 815, 1049, 1359
Eco91I GGTNACC 1 cut(s) 1289
EcoICRI GAGCTC 2 cut(s) 1263, 1358
EcoO65I GGTNACC 1 cut(s) 1289
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 3 cut(s) 504, 1265, 1360
FaeI CATG 4 cut(s) 263, 833, 857, 965
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 259, 829, 853, 961
FauI CCCGC 1 cut(s) 431
FblI GTMKAC 1 cut(s) 1252
Fnu4HI GCNGC 2 cut(s) 807, 1333
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 3 cut(s) 504, 1265, 1360
Fsp4HI GCNGC 2 cut(s) 807, 1333
FspBI CTAG 4 cut(s) 18, 450, 744, 1029
GlaI GCGC 1 cut(s) 789
GluI GCNGC 2 cut(s) 807, 1333
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 2 cut(s) 1055, 1332
HapII CCGG 4 cut(s) 93, 150, 300, 1158
HgaI GACGC 2 cut(s) 300, 1206
HhaI GCGC 1 cut(s) 790
Hin1II CATG 4 cut(s) 263, 833, 857, 965
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 2 cut(s) 604, 772
HindII GTYRAC 2 cut(s) 604, 772
HindIII AAGCTT 1 cut(s) 1183
HinfI GANTC 6 cut(s) 119, 196, 254, 390, 908, 970
HpaII CCGG 4 cut(s) 93, 150, 300, 1158
HphI GGTGA 4 cut(s) 74, 421, 1050, 1250
Hpy166II GTNNAC 3 cut(s) 604, 772, 1253
Hpy188I TCNGA 4 cut(s) 580, 843, 980, 1175
Hpy188III TCNNGA 9 cut(s) 116, 251, 260, 497, 548, 830, 940, 1158, 1377
Hpy8I GTNNAC 3 cut(s) 604, 772, 1253
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 6 cut(s) 33, 584, 585, 1140, 1280, 1334
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 4 cut(s) 381, 481, 606, 738
HpyCH4V TGCA 4 cut(s) 178, 416, 806, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 787, 794, 803, 1052
HpyF3I CTNAG 5 cut(s) 36, 228, 249, 678, 798
HpySE526I ACGT 4 cut(s) 381, 481, 606, 738
Hsp92II CATG 4 cut(s) 263, 833, 857, 965
HspAI GCGC 1 cut(s) 788
Kpn2I TCCGGA 1 cut(s) 1157
KspI CCGCGG 1 cut(s) 1336
Kzo9I GATC 4 cut(s) 183, 544, 571, 1075
LmnI GCTCC 6 cut(s) 61, 352, 469, 679, 769, 1355
Lsp1109I GCAGC 1 cut(s) 818
LweI GCATC 2 cut(s) 235, 661
MaeI CTAG 4 cut(s) 18, 450, 744, 1029
MaeII ACGT 4 cut(s) 381, 481, 606, 738
MaeIII GTNAC 8 cut(s) 145, 157, 166, 283, 409, 494, 1063, 1289
MalI GATC 4 cut(s) 185, 546, 573, 1077
MbiI CCGCTC 1 cut(s) 426
MboI GATC 4 cut(s) 183, 544, 571, 1075
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 4 cut(s) 504, 1048, 1265, 1360
MluCI AATT 3 cut(s) 895, 1016, 1068
MlyI GAGTC 2 cut(s) 263, 902
MroI TCCGGA 1 cut(s) 1157
MseI TTAA 3 cut(s) 131, 296, 374
MslI CAYNNNNRTG 4 cut(s) 173, 687, 834, 858
MspA1I CMGCKG 1 cut(s) 1335
MspI CCGG 4 cut(s) 93, 150, 300, 1158
MspR9I CCNGG 3 cut(s) 30, 93, 301
MunI CAATTG 1 cut(s) 1068
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 3 cut(s) 788, 1200, 1335
MwoI GCNNNNNNNGC 4 cut(s) 787, 794, 803, 1052
NciI CCSGG 2 cut(s) 93, 301
NdeII GATC 4 cut(s) 183, 544, 571, 1075
NlaIII CATG 4 cut(s) 263, 833, 857, 965
NlaIV GGNNCC 4 cut(s) 348, 445, 465, 1302
NmuCI GTSAC 4 cut(s) 157, 166, 409, 494
NspV TTCGAA 1 cut(s) 892
PaeR7I CTCGAG 2 cut(s) 1049, 1359
PagI TCATGA 2 cut(s) 259, 829
PceI AGGCCT 1 cut(s) 1055
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 4 cut(s) 119, 196, 390, 970
PflMI CCANNNNNTGG 1 cut(s) 1277
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 2 cut(s) 808, 1334
PleI GAGTC 2 cut(s) 262, 902
PpsI GAGTC 2 cut(s) 262, 902
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 1265, 1360
Psp6I CCWGG 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 1289
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 4 cut(s) 348, 445, 465, 1302
PspXI VCTCGAGB 2 cut(s) 1049, 1359
PstI CTGCAG 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 1151
RsaNI GTAC 1 cut(s) 1150
RseI CAYNNNNRTG 4 cut(s) 173, 687, 834, 858
SacI GAGCTC 2 cut(s) 1265, 1360
SacII CCGCGG 1 cut(s) 1336
SaqAI TTAA 3 cut(s) 131, 296, 374
SatI GCNGC 2 cut(s) 807, 1333
Sau3AI GATC 4 cut(s) 183, 544, 571, 1075
SchI GAGTC 2 cut(s) 263, 902
ScrFI CCNGG 3 cut(s) 30, 93, 301
SduI GDGCHC 4 cut(s) 504, 1048, 1265, 1360
SfaNI GCATC 2 cut(s) 235, 661
SfcI CTRYAG 1 cut(s) 804
Sfr274I CTCGAG 2 cut(s) 1049, 1359
Sfr303I CCGCGG 1 cut(s) 1336
SfuI TTCGAA 1 cut(s) 892
SgrBI CCGCGG 1 cut(s) 1336
SlaI CTCGAG 2 cut(s) 1049, 1359
SmiMI CAYNNNNRTG 4 cut(s) 173, 687, 834, 858
SmlI CTYRAG 5 cut(s) 395, 663, 701, 1049, 1359
SmoI CTYRAG 5 cut(s) 395, 663, 701, 1049, 1359
Sse9I AATT 3 cut(s) 895, 1016, 1068
SseBI AGGCCT 1 cut(s) 1055
SsiI CCGC 7 cut(s) 424, 560, 786, 1032, 1200, 1333, 1335
SspMI CTAG 4 cut(s) 18, 450, 744, 1029
SstI GAGCTC 2 cut(s) 1265, 1360
StuI AGGCCT 1 cut(s) 1055
StyD4I CCNGG 3 cut(s) 28, 91, 299
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 4 cut(s) 384, 484, 609, 741
TaqI TCGA 8 cut(s) 122, 388, 534, 881, 892, 1050, 1114, 1360
TasI AATT 3 cut(s) 895, 1016, 1068
TauI GCSGC 1 cut(s) 1335
TfiI GAWTC 4 cut(s) 119, 196, 390, 970
Tru1I TTAA 3 cut(s) 131, 296, 374
Tru9I TTAA 3 cut(s) 131, 296, 374
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 4 cut(s) 157, 166, 409, 494
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 4 cut(s) 157, 166, 409, 494
TspDTI ATGAA 7 cut(s) 92, 228, 603, 660, 725, 1194, 1362
TspGWI ACGGA 1 cut(s) 1326
TspRI CASTG 1 cut(s) 663
Van91I CCANNNNNTGG 1 cut(s) 1277
XapI RAATTY 2 cut(s) 895, 1016
XhoI CTCGAG 2 cut(s) 1049, 1359
XmiI GTMKAC 1 cut(s) 1252
XspI CTAG 4 cut(s) 18, 450, 744, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.