Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006824

Physical Location & Seq

Genomic Coordinates Forward (+)

58297815 .. 58299630

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0455100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGTTTGGCAAGGATTTTTGGTAAGGATCTATCCATGCAACCTTGTTTTCGAGTGAAGAAGGCCAAGGAGAAGGTATATGACGTGATTTTTGAAGGAGAAAGGGAAACACGATCGTTAAGGAAGCTTAAGCGGAAAGCATCAGAGTGTGGAGTACGCCAACATTTTCCAGGTAGGATTCCTAGGGATCCCACGGTGTCGATAACCGTGAACCTCCGGAGGGGGCTGTGCTCCTATGTTTGTCGGGGAAAGGACGAACCAGATCGGTCACTGATTTATTTTACTTTAGCCGGCAGGTTACCACGAGGTCATTCCGGACGATTTGGATTAGAGGTGGGTCGTTGGCCGAGTCCGTGTGTTGCTGTTCCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

10.29

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60980 AT5G60980 AT5G60980 AT5G60980
fragaria_vesca	FvH4_5g13730 FvH4_5g13730 FvH4_5g13730
malus_domestica	MD06G1226000.v1.1 MD14G1212900.v1.1
prunus_persica	Prupe.5G206200_v2.0.a1
pyrus_communis	pycom06g18040 pycom14g17650
rosa_chinensis	RchiOBHm_Chr7g0183211
rosa_laevigata	RLG00000005066
rosa_multiflora	Rmu_ssc0000111.1_g000020
rosa_roxburghii	Rroxscaffold_3G00270650
rosa_rugosa	Rorug06G0454900 Rorug06G0455000 Rorug06G0455100 Rorug06G0455200 Rorug06G0455200
rosa_samantha	Rh7AG057100 Rh7BG057000 Rh7CG058100 Rh7DG056900
rosa_wichuraiana	Rw7G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccIII	TCCGGA	2 cut(s)	216, 314
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	3 cut(s)	36, 182, 195
AcoI	YGGCCR	1 cut(s)	344
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	36, 182, 195
Aor13HI	TCCGGA	2 cut(s)	216, 314
AoxI	GGCC	2 cut(s)	63, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspA2I	CCTAGG	1 cut(s)	182
AvrII	CCTAGG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	171
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	66, 182, 192
BsaWI	WCCGGW	2 cut(s)	216, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	290
BseAI	TCCGGA	2 cut(s)	216, 314
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	66, 182, 192
BseLI	CCNNNNNNNGG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	65, 346
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	217, 291, 315
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	2 cut(s)	65, 346
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp13I	TCCGGA	2 cut(s)	216, 314
Bsp143I	GATC	4 cut(s)	28, 113, 187, 262
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	65, 346
BspEI	TCCGGA	2 cut(s)	216, 314
BspLI	GGNNCC	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	3 cut(s)	36, 182, 195
BspTI	CTTAAG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	66, 182, 192
BssMI	GATC	4 cut(s)	28, 113, 187, 262
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	66, 182
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	196, 208
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	297
BstKTI	GATC	4 cut(s)	31, 116, 190, 265
BstMBI	GATC	4 cut(s)	28, 113, 187, 262
BstMCI	CGRYCG	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	28, 187
BstYI	RGATCY	2 cut(s)	28, 187
BsuRI	GGCC	2 cut(s)	65, 346
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	5 cut(s)	65, 127, 226, 290, 346
CviKI_1	RGCY	5 cut(s)	65, 127, 226, 290, 346
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	4 cut(s)	30, 115, 189, 264
DpnII	GATC	4 cut(s)	28, 113, 187, 262
EaeI	YGGCCR	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	66, 182
Eco91I	GGTNACC	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	66, 182
ErhI	CCWWGG	2 cut(s)	66, 182
FaeI	CATG	1 cut(s)	40
FaiI	YATR	4 cut(s)	38, 79, 81, 237
FatI	CATG	1 cut(s)	36
FspBI	CTAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	65, 346
HapII	CCGG	3 cut(s)	217, 291, 315
Hin1II	CATG	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	178, 349
HpaII	CCGG	3 cut(s)	217, 291, 315
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	217, 315
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	55, 67, 89
HpyCH4III	ACNGT	2 cut(s)	196, 208
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	40
Kpn2I	TCCGGA	2 cut(s)	216, 314
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	28, 113, 187, 262
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	156, 183, 230, 273, 280, 304, 328
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	267, 297
MalI	GATC	4 cut(s)	30, 115, 189, 264
MboI	GATC	4 cut(s)	28, 113, 187, 262
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	2 cut(s)	28, 187
MhlI	GDGCHC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	213, 224, 299, 325
MroI	TCCGGA	2 cut(s)	216, 314
MroNI	GCCGGC	1 cut(s)	290
MseI	TTAA	2 cut(s)	119, 129
MslI	CAYNNNNRTG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	3 cut(s)	217, 291, 315
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
NaeI	GCCGGC	1 cut(s)	292
NdeII	GATC	4 cut(s)	28, 113, 187, 262
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	116
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	28, 187
PvuI	CGATCG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	119, 129
Sau3AI	GATC	4 cut(s)	28, 113, 187, 262
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	9 cut(s)	46, 78, 87, 129, 175, 216, 299, 310, 336
SfaNI	GCATC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	66, 182
TaaI	ACNGT	2 cut(s)	196, 208
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	52, 200
TaqII	GACCGA	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	119, 129
Tru9I	TTAA	2 cut(s)	119, 129
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.