Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006824

Physical Location & Seq

Genomic Coordinates Reverse (-)

3912361 .. 3918715

Gene Structure 6355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCAAGAAGCAAAGTTGGCAAATCCTACCCTTCCTCCCAGTGCTCAGCTTGTCGGCAATGCCTTTGTGGAGCAATACTACCAAGTCCTTCACCACTCTCCAGAATTAGTGTATAAGTTTTATCAAGATTCAAGCGCTTTAAGCAGGACAGATATCAATGGCAATATGACAACAGTCAAAACCATGGATGCAATAAGGGTAAAAATTAAATCCTTAAATTACGAAGAGTATACAGCAGAAATAAAGACTGCAGATGCTCAGGATTCTTTTGAGAAAGGGGTGATTGTTTTAGTAACTGGATGCTTGACTGGAAAAGACAACGTGGGAAGGAAATTCACCCAAACGTTCTTCCTAGCTCCACAGGAAAATGGGTACTTCGTCTTAAATGATGTTTTTAGGTATATCGAGGACAATGAATCATCACAGACTAACAGTGTCCCGGTTGACACCATTGATGAAAGTGCTCCAGAAGCTGCCTTGATAGCAGAACCAGAACCTACTCAAGCTCCTGATCATCTTGTGGTGGAGGAACCTGCAAGTTCCTTGGATGAGGATCCCAATAATGTACCCGAAGTTTGTGATCCTTCAGATAATGAGGAAGGATCAGTTATTGAAGAAGAGGTTGTGATAGAGGAGCCCCCAATTGAATCAAGTCAGAGTAGAGATCTTCCAGAAGTTGATCCAATCCCTGAAACCCAGGAGGATGCTCCGAAGAAATCATATGCATCAATTGTAAAGGTAATGAAAAGTAGCGTCGGATTCAGTCCTGTCCGTGATGCCCGAGTGAGGACAGTATCTGCAAACACTGACCATCCATCCCTTGGTTCCGCAAAACCTTCTCCGGTACCAGAGGCATCAGCTCCTAGTGGTGATGCTGCTCCGGAAAGTAGCAATGCTCATGAGGAAGCTGAAGGTCACTCCATACATGTAAGGAATTTGCCATATGATGCAACTGTCGAACAACTTGAGAAGGAGTTTAAGAAATTTGGGTCTATTAAGCGGGACGGGATACAAGTCAGAAGTAGTAAGCAAGGATTCTGTTTCGGCTTTGTTGAATTTGAAAGCGTGAGTTCCATGCAAAGTGCACTTGAGGTATTGTCTTTTACCTTTGTATTCCACTTTTCATTATTTGCAAGAAATTTCTTGATGTCTGCCTTTTTAGCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

389

Amino Acids

42.77

Weight (kDa)

4.52

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	18 - 134	8.3e-32	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	309 - 368	5.2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60980 AT5G60980 AT5G60980 AT5G60980
fragaria_vesca	FvH4_5g13730 FvH4_5g13730 FvH4_5g13730
malus_domestica	MD06G1226000.v1.1 MD14G1212900.v1.1
prunus_persica	Prupe.5G206200_v2.0.a1
pyrus_communis	pycom06g18040 pycom14g17650
rosa_chinensis	RchiOBHm_Chr7g0183211
rosa_laevigata	RLG00000005066
rosa_multiflora	Rmu_ssc0000111.1_g000020
rosa_roxburghii	Rroxscaffold_3G00270650
rosa_rugosa	Rorug06G0454900 Rorug06G0455000 Rorug06G0455100 Rorug06G0455200 Rorug06G0455200
rosa_samantha	Rh7AG057100 Rh7BG057000 Rh7CG058100 Rh7DG056900
rosa_wichuraiana	Rw7G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	844
AccB1I	GGYRCC	1 cut(s)	844
AccB7I	CCANNNNNTGG	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	2 cut(s)	828, 1000
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	5 cut(s)	548, 561, 575, 610, 674
AcsI	RAATTY	5 cut(s)	332, 934, 983, 1055, 1138
AcuI	CTGAAG	2 cut(s)	570, 930
AfaI	GTAC	3 cut(s)	374, 567, 846
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	786, 821
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	5 cut(s)	132, 614, 647, 1055, 1061
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	6 cut(s)	49, 356, 473, 506, 860, 908
AluI	AGCT	6 cut(s)	49, 356, 473, 506, 860, 908
Alw21I	GWGCWC	3 cut(s)	46, 466, 1087
Alw44I	GTGCAC	1 cut(s)	1083
AlwI	GGATC	5 cut(s)	548, 561, 575, 610, 674
AlwNI	CAGNNNCTG	2 cut(s)	473, 797
Ama87I	CYCGRG	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	880
Aor51HI	AGCGCT	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	1083
ApeKI	GCWGC	2 cut(s)	473, 875
ApoI	RAATTY	5 cut(s)	332, 934, 983, 1055, 1138
Asp718I	GGTACC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	4 cut(s)	83, 292, 328, 881
AvaI	CYCGRG	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	1087
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	3 cut(s)	46, 466, 1087
BbvI	GCAGC	2 cut(s)	460, 862
BccI	CCATC	2 cut(s)	819, 823
BciT130I	CCWGG	1 cut(s)	698
BciVI	GTATCC	1 cut(s)	1002
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	2 cut(s)	353, 864
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	1002
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	2 cut(s)	474, 876
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	475, 877
Bme1390I	CCNGG	2 cut(s)	440, 698
BmeT110I	CYCGRG	1 cut(s)	780
BmiI	GGNNCC	5 cut(s)	531, 555, 636, 826, 846
BmrFI	CCNGG	2 cut(s)	440, 698
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	9 cut(s)	178, 244, 290, 694, 734, 766, 862, 863, 937
BmuI	ACTGGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	84, 450
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	3 cut(s)	486, 986, 1109
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	4 cut(s)	183, 543, 696, 820
BsaWI	WCCGGW	2 cut(s)	841, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	786, 821
Bse1I	ACTGG	3 cut(s)	39, 301, 313
Bse3DI	GCAATG	2 cut(s)	64, 898
Bse8I	GATNNNNATC	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	4 cut(s)	183, 543, 696, 820
BseGI	GGATG	6 cut(s)	193, 305, 553, 709, 811, 815
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	786, 821
BseMI	GCAATG	2 cut(s)	64, 898
BseMII	CTCAG	2 cut(s)	59, 272
BseNI	ACTGG	3 cut(s)	39, 301, 313
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	1 cut(s)	1087
BseXI	GCAGC	2 cut(s)	460, 862
BshNI	GGYRCC	1 cut(s)	844
BsiHKAI	GWGCWC	3 cut(s)	46, 466, 1087
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	3 cut(s)	440, 842, 881
BslFI	GGGAC	2 cut(s)	422, 1016
BslI	CCNNNNNNNGG	2 cut(s)	786, 821
BsmFI	GGGAC	2 cut(s)	422, 1016
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	4 cut(s)	46, 466, 639, 1087
Bsp13I	TCCGGA	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	828, 1000
BspCNI	CTCAG	2 cut(s)	58, 271
BspEI	TCCGGA	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	5 cut(s)	531, 555, 636, 826, 846
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	5 cut(s)	548, 561, 575, 610, 674
BspT107I	GGYRCC	1 cut(s)	844
BsrDI	GCAATG	2 cut(s)	64, 898
BsrI	ACTGG	3 cut(s)	39, 301, 313
BssECI	CCNNGG	4 cut(s)	183, 543, 696, 820
BssMI	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	3 cut(s)	183, 543, 820
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	4 cut(s)	175, 434, 793, 955
Bst6I	CTCTTC	2 cut(s)	219, 612
BstDEI	CTNAG	2 cut(s)	45, 258
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	6 cut(s)	193, 305, 553, 709, 811, 815
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	6 cut(s)	514, 556, 583, 605, 667, 682
BstMBI	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 141, 470, 482, 1160
BstNI	CCWGG	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	929
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	438, 696
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	1087
BstV1I	GCAGC	2 cut(s)	460, 862
BstX2I	RGATCY	2 cut(s)	553, 664
BstYI	RGATCY	2 cut(s)	553, 664
BstZ17I	GTATAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	6 cut(s)	193, 305, 553, 709, 811, 815
BtsIMutI	CAGTG	3 cut(s)	46, 439, 804
BveI	ACCTGC	1 cut(s)	541
CaiI	CAGNNNCTG	2 cut(s)	473, 797
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	1 cut(s)	137
CseI	GACGC	1 cut(s)	742
Csp6I	GTAC	3 cut(s)	373, 566, 845
CviAII	CATG	4 cut(s)	184, 899, 926, 1075
CviJI	RGCY	9 cut(s)	49, 356, 473, 506, 637, 860, 908, 1047, 1163
CviKI_1	RGCY	9 cut(s)	49, 356, 473, 506, 637, 860, 908, 1047, 1163
CviQI	GTAC	3 cut(s)	373, 566, 845
DdeI	CTNAG	2 cut(s)	45, 258
DpnI	GATC	6 cut(s)	513, 555, 582, 604, 666, 681
DpnII	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
Eam1104I	CTCTTC	2 cut(s)	219, 612
EarI	CTCTTC	2 cut(s)	219, 612
Eco130I	CCWWGG	3 cut(s)	183, 543, 820
Eco24I	GRGCYC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	570, 930
Eco88I	CYCGRG	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	3 cut(s)	183, 543, 820
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	3 cut(s)	183, 543, 820
FaeI	CATG	4 cut(s)	187, 902, 929, 1078
FaqI	GGGAC	2 cut(s)	422, 1016
FatI	CATG	4 cut(s)	183, 898, 925, 1074
FauI	CCCGC	1 cut(s)	993
FauNDI	CATATG	2 cut(s)	721, 943
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	474, 876
FokI	GGATG	6 cut(s)	200, 312, 560, 716, 798, 802
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	474, 876
FspBI	CTAG	2 cut(s)	353, 864
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	2 cut(s)	474, 876
GsuI	CTGGAG	2 cut(s)	84, 450
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	3 cut(s)	440, 842, 881
HgaI	GACGC	1 cut(s)	742
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	187, 902, 929, 1078
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	6 cut(s)	128, 263, 416, 647, 759, 1035
HpaII	CCGG	3 cut(s)	440, 842, 881
HphI	GGTGA	4 cut(s)	83, 292, 328, 881
Hpy166II	GTNNAC	3 cut(s)	231, 445, 1085
Hpy188I	TCNGA	5 cut(s)	589, 657, 711, 758, 1019
Hpy188III	TCNNGA	9 cut(s)	101, 125, 260, 467, 509, 671, 881, 899, 1144
Hpy8I	GTNNAC	3 cut(s)	231, 445, 1085
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	8 cut(s)	41, 98, 321, 593, 594, 846, 905, 964
HpyCH4III	ACNGT	4 cut(s)	175, 434, 793, 955
HpyCH4IV	ACGT	2 cut(s)	321, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 141, 470, 482, 1160
HpyF3I	CTNAG	2 cut(s)	45, 258
HpySE526I	ACGT	2 cut(s)	321, 344
Hsp92II	CATG	4 cut(s)	187, 902, 929, 1078
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	880
KpnI	GGTACC	1 cut(s)	848
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
LmnI	GCTCC	8 cut(s)	70, 361, 469, 511, 634, 712, 865, 883
Lsp1109I	GCAGC	2 cut(s)	460, 862
LweI	GCATC	9 cut(s)	178, 244, 290, 694, 734, 766, 862, 863, 937
MaeI	CTAG	2 cut(s)	353, 864
MaeII	ACGT	2 cut(s)	321, 344
MaeIII	GTNAC	2 cut(s)	292, 914
MalI	GATC	6 cut(s)	513, 555, 582, 604, 666, 681
MboI	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
MboII	GAAGA	6 cut(s)	236, 340, 626, 629, 659, 724
MfeI	CAATTG	2 cut(s)	642, 729
MflI	RGATCY	2 cut(s)	553, 664
MhlI	GDGCHC	4 cut(s)	46, 466, 639, 1087
MmeI	TCCRAC	1 cut(s)	736
Mph1103I	ATGCAT	1 cut(s)	727
MroI	TCCGGA	1 cut(s)	880
MseI	TTAA	6 cut(s)	140, 207, 215, 383, 978, 996
MspI	CCGG	3 cut(s)	440, 842, 881
MspR9I	CCNGG	2 cut(s)	440, 698
MunI	CAATTG	2 cut(s)	642, 729
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	5 cut(s)	17, 141, 470, 482, 1160
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	2 cut(s)	721, 943
NdeII	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
NlaIII	CATG	4 cut(s)	187, 902, 929, 1078
NlaIV	GGNNCC	5 cut(s)	531, 555, 636, 826, 846
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	929
PagI	TCATGA	1 cut(s)	898
PciI	ACATGT	1 cut(s)	925
PfeI	GAWTC	6 cut(s)	128, 263, 416, 647, 759, 1035
PflMI	CCANNNNNTGG	1 cut(s)	821
PkrI	GCNGC	2 cut(s)	475, 877
PscI	ACATGT	1 cut(s)	925
PshAI	GACNNNNGTC	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	5 cut(s)	531, 555, 636, 826, 846
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	473, 797
PsuI	RGATCY	2 cut(s)	553, 664
RsaI	GTAC	3 cut(s)	374, 567, 846
RsaNI	GTAC	3 cut(s)	373, 566, 845
SaqAI	TTAA	6 cut(s)	140, 207, 215, 383, 978, 996
SatI	GCNGC	2 cut(s)	474, 876
Sau3AI	GATC	6 cut(s)	511, 553, 580, 602, 664, 679
ScrFI	CCNGG	2 cut(s)	440, 698
SduI	GDGCHC	4 cut(s)	46, 466, 639, 1087
SfaNI	GCATC	9 cut(s)	178, 244, 290, 694, 734, 766, 862, 863, 937
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	3 cut(s)	501, 965, 1088
SmoI	CTYRAG	3 cut(s)	501, 965, 1088
SsiI	CCGC	2 cut(s)	828, 1000
SspMI	CTAG	2 cut(s)	353, 864
StyD4I	CCNGG	2 cut(s)	438, 696
StyI	CCWWGG	3 cut(s)	183, 543, 820
TaaI	ACNGT	4 cut(s)	175, 434, 793, 955
TaiI	ACGT	2 cut(s)	324, 347
TaqI	TCGA	2 cut(s)	405, 957
TfiI	GAWTC	6 cut(s)	128, 263, 416, 647, 759, 1035
Tru1I	TTAA	6 cut(s)	140, 207, 215, 383, 978, 996
Tru9I	TTAA	6 cut(s)	140, 207, 215, 383, 978, 996
TscAI	CASTG	3 cut(s)	46, 439, 811
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	2 cut(s)	473, 875
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	4 cut(s)	429, 471, 758, 1113
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	3 cut(s)	46, 439, 811
Van91I	CCANNNNNTGG	1 cut(s)	821
VneI	GTGCAC	1 cut(s)	1083
XapI	RAATTY	5 cut(s)	332, 934, 983, 1055, 1138
XceI	RCATGY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	353, 864
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.