Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006824

Physical Location & Seq

Genomic Coordinates Forward (+)

58322233 .. 58324606

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0455200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAAGGCTAAAAACAAACCGCGAAAATCAAAAGGGTACACAAGAGTTTCTAGCCATGTATTCTAGCATTTTTGGAGGAATAACTACAGATCCATCTGCTATGGTGATCCCTATTGATGACCACATGGTCCACAGAGGGCATGGGGTTTTCGACACTGCTGCTATAAGGGACGGATATCTGTACGAGCTGGACCAGCACATTGACCGTATTTTGAGGTCAGCATCCATGGCCAAAATTGGCCTACCGTTTGATAGAGAAAGCATTAGAAAAATACTCATACAAACAGTGAGTGCTTCCAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGGCAGGACCTGGTGATTTTCAGTTGTCTCCCTCTGGTTGCAATCAGCCAGCTCTTTATGCTATTGTAGTCCAAGACAAATCACCTTTTAGTTCAAAGGGTGTTAAAGTAGTAACATCGTCAATCCCTATAAAACCACCCCAATTTGCGGTTATGAAGAGTGTGAATTATCTTCCGAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTGCCTTTGCAGCGATTTGGCTGGATGGTGATGGATTTATTGCGGAAGGCCCTAACATGAATGTGGCTTTTGTTACAAAAGATAAGGAACTTCTGATGCCTCAGTTTGACAAAATATTAAGTGGCTGCACGGCTAAGAGAGTTTTGGCGCTTGCAGAAGGCCTGGTGAAGGAGGGTAAGCTTCAGGCAGTGAGAGTCGTAAATGTGACTGTTGAGGAAGGGAAAAAGGCAGATGAGATGATGCTTATTGGCAGTGGAATTCTTGTTCGCCCTATAGTGCAATGGGACGAGCAGATCATTGGTGATGGCAAAGAAGGACCCTTGACTCAGATTCTCCTGAATCTTATCATCAAGGACATGGAATCCGGCCCCCTTACTGTCCGAACGCCTATTCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

314

Amino Acids

34.45

Weight (kDa)

6.92

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	49 - 276	1.8e-47	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60980 AT5G60980 AT5G60980 AT5G60980
fragaria_vesca	FvH4_5g13730 FvH4_5g13730 FvH4_5g13730
malus_domestica	MD06G1226000.v1.1 MD14G1212900.v1.1
prunus_persica	Prupe.5G206200_v2.0.a1
pyrus_communis	pycom06g18040 pycom14g17650
rosa_chinensis	RchiOBHm_Chr7g0183211
rosa_laevigata	RLG00000005066
rosa_multiflora	Rmu_ssc0000111.1_g000020
rosa_roxburghii	Rroxscaffold_3G00270650
rosa_rugosa	Rorug06G0454900 Rorug06G0455000 Rorug06G0455100 Rorug06G0455200 Rorug06G0455200
rosa_samantha	Rh7AG057100 Rh7BG057000 Rh7CG058100 Rh7DG056900
rosa_wichuraiana	Rw7G004680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	22, 482, 587
AclWI	GGATC	3 cut(s)	86, 103, 322
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	2 cut(s)	555, 710
AfaI	GTAC	3 cut(s)	40, 185, 326
AfiI	CCNNNNNNNGG	2 cut(s)	481, 712
AgsI	TTSAA	2 cut(s)	429, 522
AjnI	CCWGG	2 cut(s)	343, 705
AloI	GAACNNNNNNTCC	3 cut(s)	792, 824, 919
AluBI	AGCT	3 cut(s)	190, 386, 724
AluI	AGCT	3 cut(s)	190, 386, 724
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	3 cut(s)	86, 103, 322
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	5 cut(s)	231, 241, 592, 703, 910
ApeKI	GCWGC	3 cut(s)	161, 554, 669
ApoI	RAATTY	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	6 cut(s)	130, 193, 341, 593, 860, 911
AsuHPI	GGTGA	6 cut(s)	118, 359, 408, 584, 721, 857
AvaII	GGWCC	4 cut(s)	130, 193, 341, 860
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	148, 566, 656
BccI	CCATC	5 cut(s)	103, 520, 563, 569, 842
BceAI	ACGGC	1 cut(s)	690
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	345, 707
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	3 cut(s)	53, 66, 943
BfmI	CTRYAG	2 cut(s)	87, 816
BfoI	RGCGCY	1 cut(s)	695
BisI	GCNGC	3 cut(s)	162, 555, 670
BlsI	GCNGC	3 cut(s)	163, 556, 671
Bme1390I	CCNGG	2 cut(s)	345, 707
Bme18I	GGWCC	4 cut(s)	130, 193, 341, 860
BmgT120I	GGNCC	6 cut(s)	130, 193, 341, 593, 860, 911
BmiI	GGNNCC	3 cut(s)	547, 862, 913
BmrFI	CCNGG	2 cut(s)	345, 707
BmsI	GCATC	3 cut(s)	233, 630, 774
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 712
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	345, 707
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	224, 574
BseLI	CCNNNNNNNGG	2 cut(s)	481, 712
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	659, 884
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	148, 566, 656
BsgI	GTGCAG	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	5 cut(s)	233, 243, 594, 705, 912
BshNI	GGYRCC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	909
BslFI	GGGAC	2 cut(s)	185, 842
BslI	CCNNNNNNNGG	2 cut(s)	481, 712
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	185, 842
BsnI	GGCC	5 cut(s)	233, 243, 594, 705, 912
Bsp143I	GATC	4 cut(s)	91, 108, 314, 837
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	3 cut(s)	22, 482, 587
BspANI	GGCC	5 cut(s)	233, 243, 594, 705, 912
BspCNI	CTCAG	2 cut(s)	658, 883
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	547, 862, 913
BspPI	GGATC	3 cut(s)	86, 103, 322
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	91, 108, 314, 837
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	345, 707
Bst4CI	ACNGT	5 cut(s)	209, 249, 289, 754, 922
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	384, 696
BstDEI	CTNAG	4 cut(s)	320, 645, 678, 870
BstDSI	CCRYGG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	2 cut(s)	224, 574
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	4 cut(s)	94, 111, 317, 840
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	4 cut(s)	91, 108, 314, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
BstNI	CCWGG	2 cut(s)	345, 707
BstSCI	CCNGG	2 cut(s)	343, 705
BstSFI	CTRYAG	2 cut(s)	87, 816
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	148, 566, 656
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	5 cut(s)	233, 243, 594, 705, 912
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	224, 574
BtsI	GCAGTG	3 cut(s)	156, 738, 802
BtsIMutI	CAGTG	4 cut(s)	156, 294, 738, 802
Cac8I	GCNNGC	2 cut(s)	384, 696
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	6 cut(s)	130, 193, 341, 593, 860, 911
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	39, 184, 325
CviAII	CATG	6 cut(s)	58, 127, 143, 229, 601, 901
CviQI	GTAC	3 cut(s)	39, 184, 325
DdeI	CTNAG	4 cut(s)	320, 645, 678, 870
DpnI	GATC	4 cut(s)	93, 110, 316, 839
DpnII	GATC	4 cut(s)	91, 108, 314, 837
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	179
Eco47I	GGWCC	4 cut(s)	130, 193, 341, 860
Eco57I	CTGAAG	2 cut(s)	555, 710
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	3 cut(s)	341, 593, 860
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	343, 705
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	6 cut(s)	61, 130, 146, 232, 604, 904
FaqI	GGGAC	2 cut(s)	185, 842
FatI	CATG	6 cut(s)	57, 126, 142, 228, 600, 900
Fnu4HI	GCNGC	3 cut(s)	162, 555, 670
FokI	GGATG	2 cut(s)	211, 581
Fsp4HI	GCNGC	3 cut(s)	162, 555, 670
FspBI	CTAG	3 cut(s)	53, 66, 943
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	3 cut(s)	162, 555, 670
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	5 cut(s)	233, 243, 594, 705, 912
HapII	CCGG	1 cut(s)	909
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	61, 130, 146, 232, 604, 904
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	5 cut(s)	738, 868, 874, 883, 905
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	6 cut(s)	118, 359, 408, 584, 721, 857
Hpy166II	GTNNAC	2 cut(s)	41, 133
Hpy188I	TCNGA	4 cut(s)	510, 639, 873, 926
Hpy188III	TCNNGA	1 cut(s)	880
Hpy8I	GTNNAC	2 cut(s)	41, 133
HpyAV	CCTTC	5 cut(s)	584, 695, 706, 755, 851
HpyCH4III	ACNGT	5 cut(s)	209, 249, 289, 754, 922
HpyCH4V	TGCA	6 cut(s)	306, 375, 554, 672, 698, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
HpyF3I	CTNAG	4 cut(s)	320, 645, 678, 870
Hsp92II	CATG	6 cut(s)	61, 130, 146, 232, 604, 904
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	4 cut(s)	91, 108, 314, 837
Lsp1109I	GCAGC	3 cut(s)	148, 566, 656
LweI	GCATC	3 cut(s)	233, 630, 774
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	3 cut(s)	53, 66, 943
MaeIII	GTNAC	3 cut(s)	445, 616, 748
MalI	GATC	4 cut(s)	93, 110, 316, 839
MboI	GATC	4 cut(s)	91, 108, 314, 837
MboII	GAAGA	3 cut(s)	497, 502, 548
MflI	RGATCY	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	4 cut(s)	237, 476, 499, 801
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	747, 862
MnlI	CCTC	8 cut(s)	71, 131, 210, 376, 523, 654, 709, 751
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	2 cut(s)	438, 662
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	2 cut(s)	345, 707
MvaI	CCWGG	2 cut(s)	345, 707
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	91, 108, 314, 837
NlaIII	CATG	6 cut(s)	61, 130, 146, 232, 604, 904
NlaIV	GGNNCC	3 cut(s)	547, 862, 913
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	874, 883, 905
PkrI	GCNGC	3 cut(s)	163, 556, 671
PleI	GAGTC	2 cut(s)	746, 862
PpsI	GAGTC	2 cut(s)	746, 862
PpuMI	RGGWCCY	2 cut(s)	341, 860
Psp5II	RGGWCCY	2 cut(s)	341, 860
Psp6I	CCWGG	2 cut(s)	343, 705
PspGI	CCWGG	2 cut(s)	343, 705
PspN4I	GGNNCC	3 cut(s)	547, 862, 913
PspPI	GGNCC	6 cut(s)	130, 193, 341, 593, 860, 911
PspPPI	RGGWCCY	2 cut(s)	341, 860
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	3 cut(s)	40, 185, 326
RsaNI	GTAC	3 cut(s)	39, 184, 325
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	2 cut(s)	438, 662
SatI	GCNGC	3 cut(s)	162, 555, 670
Sau3AI	GATC	4 cut(s)	91, 108, 314, 837
Sau96I	GGNCC	6 cut(s)	130, 193, 341, 593, 860, 911
SchI	GAGTC	2 cut(s)	747, 862
ScrFI	CCNGG	2 cut(s)	345, 707
SetI	ASST	8 cut(s)	192, 221, 326, 346, 388, 421, 547, 726
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	233, 630, 774
SfcI	CTRYAG	2 cut(s)	87, 816
SinI	GGWCC	4 cut(s)	130, 193, 341, 860
SmiMI	CAYNNNNRTG	1 cut(s)	605
Sse9I	AATT	4 cut(s)	237, 476, 499, 801
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	3 cut(s)	22, 482, 587
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	3 cut(s)	53, 66, 943
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	343, 705
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	5 cut(s)	209, 249, 289, 754, 922
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	237, 476, 499, 801
TfiI	GAWTC	3 cut(s)	874, 883, 905
Tru1I	TTAA	2 cut(s)	438, 662
Tru9I	TTAA	2 cut(s)	438, 662
TscAI	CASTG	4 cut(s)	163, 294, 738, 802
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	161, 554, 669
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	2 cut(s)	503, 617
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	163, 294, 738, 802
VpaK11BI	GGWCC	4 cut(s)	130, 193, 341, 860
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	3 cut(s)	53, 66, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.