Rroxscaffold_3G00270650

Ras GTPase-activating protein-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
63229688 .. 63235077
5390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270650.1

Sequence Viewer

Length: 1401 bp
ATGCAAGAAGCAAAGTTGGCAAATCCTACCCTTCCGCCCAGTGCTCAGCTTGTCGGCAATGCCTTTGTGGAGCAATACTACCAAGTCCTTCACCACTCGCCAGAATTAGTGTATAAGTTTTATCAAGATTCAAGCGCTTTAAGCAGGACAGATATCAATGGCAATATGACAACAGTCAAAACCATGGATGCAATAAGGGTAAAAATTAAATCCTTAAATTACGAAGAGTATACAGCGGAAATAAAGACTGCAGATGCTCAGGAATCTTTTGAGAAAGGGGTGATTGTTTTAGTAACTGGATGCTTGACTGGAAAAGACAACGTGGGAAGGAAATTCACCCAAACTTTCTTCCTAGCTCCACAGGAAAATGGGTACTTCGTCTTAAATGATGTTTTTCGGTATATCGAGGACAATGAATCATCACAGACTAACAGTGTCCCGGTTAACACCATTGATGAAAGTGCTCCAGAAGCTGCCTTGATAGCAGAACCAGAACCTACTCAAGCTCCTGATCATCTTGTGGTGGAGGAACCTGCAAGTTCCTTGGATGAGGATCCCAATAATGGACCCGAAGTTTGTGATCCTTCAGATGATGAGGAAGGATCAGTTATTGAAGAAGAGGTTGTGATAGAGGAGCCCCCAATTGAATCAAGTCAGAGTAGAGATCTTCCAGAAGTTGATCCAATCCCTGAAACCCAGGAGGATGCTCCGAAGAAATCATATGCATCAATTGTAATGAAAAGTAGCGTCGCATCCAGTCCTGTCCGTGCTGCCCGAGTGAGGACGGTATCTGCAAACACTGACCATCCATCCCTTGGTTCCGCAAAACCTTCTCCGGTACCAGAGGCATCAGCTCCTAGTGGTGATGCTGCTCCAGAAAGTAGCAATGCTCATGAGGAAGCTGAAGGTCACTCCATACATGTAAGGAATTTGCCTTATGATGCAACTGTCGAACAACTTGAGAAGGAGTTTAAGAAATTTGGGTCTATTAAGCGGGACGGGATCCAAGTCAGAAGTAGTAAGCAAGGATTCTGTTTTGGCTTTGTTGAATTTGAAAGCGTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCATGATCGGCGATCGTCAAGCAGTGATTGAGGAAAAGAGAACCACAACCCGAGTTAGCAATGGTGGAAGAGGGAGGTTTTCTTCCGGAAGAGCTGGCTTCCGAAGTGACTCTTTCAGGGGTGGTCGTGGAAACTATGGTGGTAGCCGTAGCTTTGGAAGGAATGAATTCAGAAACCAGGGTGAGTTTTCACGATCCAAGTCATCAGCTGGACGCAATGGAGAGGGTTATCAGCGCGTCAATCCAAATGGAAGGGGTGGTGGTCGCCAAGGGGCAGCAAACAACCGCAGCTCTGTTCCTACTTGA

Protein Analysis

466

Amino Acids

50.62

Weight (kDa)

4.95

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 18 - 134 9.4e-32 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 307 - 363 7.1e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 838
AccB1I GGYRCC 1 cut(s) 838
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 1332
AccIII TCCGGA 1 cut(s) 1181
AciI CCGC 5 cut(s) 35, 236, 822, 994, 1381
AclWI GGATC 8 cut(s) 548, 561, 575, 610, 674, 997, 1010, 1284
AcsI RAATTY 5 cut(s) 332, 928, 977, 1049, 1262
AcuI CTGAAG 2 cut(s) 570, 924
AfaI GTAC 2 cut(s) 374, 840
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 563, 780, 815
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 5 cut(s) 132, 614, 647, 1049, 1055
AjnI CCWGG 2 cut(s) 696, 1272
Alw21I GWGCWC 3 cut(s) 46, 466, 1081
Alw44I GTGCAC 1 cut(s) 1077
AlwI GGATC 8 cut(s) 548, 561, 575, 610, 674, 997, 1010, 1284
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 2 cut(s) 774, 1146
Aor13HI TCCGGA 1 cut(s) 1181
Aor51HI AGCGCT 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 5 cut(s) 473, 770, 869, 1370, 1383
ApoI RAATTY 5 cut(s) 332, 928, 977, 1049, 1262
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
Asp700I GAANNNNTTC 1 cut(s) 1262
Asp718I GGTACC 1 cut(s) 838
AspLEI GCGC 2 cut(s) 137, 1332
AspS9I GGNCC 1 cut(s) 566
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 6 cut(s) 83, 292, 328, 875, 1083, 1289
AvaI CYCGRG 2 cut(s) 774, 1146
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 1081
BamHI GGATCC 2 cut(s) 553, 1002
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 639
Bbv12I GWGCWC 3 cut(s) 46, 466, 1081
BbvI GCAGC 5 cut(s) 460, 757, 856, 1382, 1395
BccI CCATC 2 cut(s) 813, 817
BceAI ACGGC 1 cut(s) 1227
BciT130I CCWGG 2 cut(s) 698, 1274
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 440
BfaI CTAG 2 cut(s) 353, 858
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 664
BisI GCNGC 5 cut(s) 474, 771, 870, 1371, 1384
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 5 cut(s) 475, 772, 871, 1372, 1385
Bme1390I CCNGG 3 cut(s) 440, 698, 1274
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 2 cut(s) 774, 1146
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 7 cut(s) 531, 555, 568, 636, 820, 840, 1004
BmrFI CCNGG 3 cut(s) 440, 698, 1274
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 9 cut(s) 178, 244, 290, 694, 734, 761, 856, 857, 931
BmuI ACTGGG 1 cut(s) 33
BoxI GACNNNNGTC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 450, 858
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 3 cut(s) 486, 980, 1103
BpuMI CCSGG 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 6 cut(s) 183, 543, 696, 814, 1273, 1363
BsaWI WCCGGW 2 cut(s) 835, 1181
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 780, 815
Bse1I ACTGG 4 cut(s) 39, 301, 313, 756
Bse3DI GCAATG 4 cut(s) 64, 892, 1162, 1318
Bse8I GATNNNNATC 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 1181
BseBI CCWGG 2 cut(s) 698, 1274
BseDI CCNNGG 6 cut(s) 183, 543, 696, 814, 1273, 1363
BseGI GGATG 7 cut(s) 193, 305, 553, 709, 752, 805, 809
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 3 cut(s) 563, 780, 815
BseMI GCAATG 4 cut(s) 64, 892, 1162, 1318
BseMII CTCAG 2 cut(s) 59, 272
BseNI ACTGG 4 cut(s) 39, 301, 313, 756
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 5 cut(s) 460, 757, 856, 1382, 1395
Bsh1236I CGCG 1 cut(s) 1332
Bsh1285I CGRYCG 1 cut(s) 1111
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 1 cut(s) 1111
BsiHKAI GWGCWC 3 cut(s) 46, 466, 1081
BsiHKCI CYCGRG 2 cut(s) 774, 1146
BsiSI CCGG 3 cut(s) 440, 836, 1182
BslFI GGGAC 2 cut(s) 422, 1010
BslI CCNNNNNNNGG 3 cut(s) 563, 780, 815
BsmFI GGGAC 2 cut(s) 422, 1010
BsoBI CYCGRG 2 cut(s) 774, 1146
Bsp1286I GDGCHC 4 cut(s) 46, 466, 639, 1081
Bsp13I TCCGGA 1 cut(s) 1181
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 5 cut(s) 35, 236, 822, 994, 1381
BspCNI CTCAG 2 cut(s) 58, 271
BspEI TCCGGA 1 cut(s) 1181
BspFNI CGCG 1 cut(s) 1332
BspHI TCATGA 2 cut(s) 892, 1098
BspLI GGNNCC 7 cut(s) 531, 555, 568, 636, 820, 840, 1004
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 8 cut(s) 548, 561, 575, 610, 674, 997, 1010, 1284
BspQI GCTCTTC 1 cut(s) 1180
BspT107I GGYRCC 1 cut(s) 838
BsrDI GCAATG 4 cut(s) 64, 892, 1162, 1318
BsrI ACTGG 4 cut(s) 39, 301, 313, 756
BssECI CCNNGG 6 cut(s) 183, 543, 696, 814, 1273, 1363
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 4 cut(s) 183, 543, 814, 1363
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 698, 1274
Bst4CI ACNGT 4 cut(s) 175, 434, 787, 949
Bst6I CTCTTC 4 cut(s) 219, 612, 1159, 1180
BstC8I GCNNGC 1 cut(s) 1192
BstDEI CTNAG 2 cut(s) 45, 258
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 7 cut(s) 193, 305, 553, 709, 752, 805, 809
BstFNI CGCG 1 cut(s) 1332
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 1332
BstMCI CGRYCG 1 cut(s) 1111
BstMWI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1085
BstNI CCWGG 2 cut(s) 698, 1274
BstNSI RCATGY 1 cut(s) 923
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 438, 696, 1272
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 5 cut(s) 460, 757, 856, 1382, 1395
BstX2I RGATCY 3 cut(s) 553, 664, 1002
BstYI RGATCY 3 cut(s) 553, 664, 1002
BstZ17I GTATAC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 7 cut(s) 193, 305, 553, 709, 752, 805, 809
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 4 cut(s) 46, 439, 798, 1125
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 1192
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 2 cut(s) 892, 1098
CfoI GCGC 2 cut(s) 137, 1332
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 3 cut(s) 736, 1317, 1321
Csp6I GTAC 2 cut(s) 373, 839
CviAII CATG 5 cut(s) 184, 893, 920, 1069, 1099
CviQI GTAC 2 cut(s) 373, 839
DdeI CTNAG 2 cut(s) 45, 258
Eam1104I CTCTTC 4 cut(s) 219, 612, 1159, 1180
EarI CTCTTC 4 cut(s) 219, 612, 1159, 1180
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 4 cut(s) 183, 543, 814, 1363
Eco24I GRGCYC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 566
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 570, 924
Eco88I CYCGRG 2 cut(s) 774, 1146
EcoRI GAATTC 1 cut(s) 1262
EcoRII CCWGG 2 cut(s) 696, 1272
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 4 cut(s) 183, 543, 814, 1363
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 4 cut(s) 183, 543, 814, 1363
FaeI CATG 5 cut(s) 187, 896, 923, 1072, 1102
FalI AAGNNNNNCTT 2 cut(s) 1192, 1224
FaqI GGGAC 2 cut(s) 422, 1010
FatI CATG 5 cut(s) 183, 892, 919, 1068, 1098
FauI CCCGC 1 cut(s) 987
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 5 cut(s) 474, 771, 870, 1371, 1384
FokI GGATG 7 cut(s) 200, 312, 560, 716, 739, 792, 796
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 5 cut(s) 474, 771, 870, 1371, 1384
FspBI CTAG 2 cut(s) 353, 858
GlaI GCGC 2 cut(s) 136, 1331
GluI GCNGC 5 cut(s) 474, 771, 870, 1371, 1384
GsuI CTGGAG 2 cut(s) 450, 858
HaeII RGCGCY 1 cut(s) 138
HapII CCGG 3 cut(s) 440, 836, 1182
HgaI GACGC 3 cut(s) 736, 1317, 1321
HhaI GCGC 2 cut(s) 137, 1332
Hin1II CATG 5 cut(s) 187, 896, 923, 1072, 1102
Hin6I GCGC 2 cut(s) 135, 1330
HinP1I GCGC 2 cut(s) 135, 1330
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 6 cut(s) 128, 263, 416, 647, 1029, 1205
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 3 cut(s) 440, 836, 1182
HphI GGTGA 6 cut(s) 83, 292, 328, 875, 1083, 1289
Hpy166II GTNNAC 3 cut(s) 231, 445, 1079
Hpy188I TCNGA 6 cut(s) 589, 657, 711, 1013, 1199, 1268
Hpy8I GTNNAC 3 cut(s) 231, 445, 1079
Hpy99I CGWCG 1 cut(s) 752
HpyCH4III ACNGT 4 cut(s) 175, 434, 787, 949
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 4, 191, 251, 536, 725, 794, 944, 1072, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1085
HpyF3I CTNAG 2 cut(s) 45, 258
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 5 cut(s) 187, 896, 923, 1072, 1102
HspAI GCGC 2 cut(s) 135, 1330
Kpn2I TCCGGA 1 cut(s) 1181
KpnI GGTACC 1 cut(s) 842
Ksp22I TGATCA 1 cut(s) 511
KspAI GTTAAC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 1180
LmnI GCTCC 8 cut(s) 70, 361, 469, 511, 634, 712, 859, 877
Lsp1109I GCAGC 5 cut(s) 460, 757, 856, 1382, 1395
LweI GCATC 9 cut(s) 178, 244, 290, 694, 734, 761, 856, 857, 931
MaeI CTAG 2 cut(s) 353, 858
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 292, 908, 1202
MboII GAAGA 9 cut(s) 236, 340, 626, 629, 659, 724, 1170, 1176, 1197
MfeI CAATTG 2 cut(s) 642, 729
MflI RGATCY 3 cut(s) 553, 664, 1002
MhlI GDGCHC 4 cut(s) 46, 466, 639, 1081
MlyI GAGTC 1 cut(s) 1199
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 1181
MroXI GAANNNNTTC 1 cut(s) 1262
MseI TTAA 7 cut(s) 140, 207, 215, 383, 444, 972, 990
MspA1I CMGCKG 2 cut(s) 236, 1304
MspI CCGG 3 cut(s) 440, 836, 1182
MspR9I CCNGG 3 cut(s) 440, 698, 1274
MunI CAATTG 2 cut(s) 642, 729
MvaI CCWGG 2 cut(s) 698, 1274
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1085
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 721
NlaIII CATG 5 cut(s) 187, 896, 923, 1072, 1102
NlaIV GGNNCC 7 cut(s) 531, 555, 568, 636, 820, 840, 1004
NmuCI GTSAC 2 cut(s) 908, 1202
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 923
PagI TCATGA 2 cut(s) 892, 1098
PciI ACATGT 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 1180
PdmI GAANNNNTTC 1 cut(s) 1262
PfeI GAWTC 5 cut(s) 128, 263, 416, 647, 1029
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 5 cut(s) 475, 772, 871, 1372, 1385
Ple19I CGATCG 1 cut(s) 1111
PleI GAGTC 1 cut(s) 1199
PpsI GAGTC 1 cut(s) 1199
PscI ACATGT 1 cut(s) 919
PshAI GACNNNNGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 696, 1272
PspGI CCWGG 2 cut(s) 696, 1272
PspN4I GGNNCC 7 cut(s) 531, 555, 568, 636, 820, 840, 1004
PspPI GGNCC 1 cut(s) 566
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 3 cut(s) 553, 664, 1002
PvuI CGATCG 1 cut(s) 1111
PvuII CAGCTG 1 cut(s) 1304
RsaI GTAC 2 cut(s) 374, 840
RsaNI GTAC 2 cut(s) 373, 839
SapI GCTCTTC 1 cut(s) 1180
SaqAI TTAA 7 cut(s) 140, 207, 215, 383, 444, 972, 990
SatI GCNGC 5 cut(s) 474, 771, 870, 1371, 1384
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 1 cut(s) 1199
ScrFI CCNGG 3 cut(s) 440, 698, 1274
SduI GDGCHC 4 cut(s) 46, 466, 639, 1081
SfaNI GCATC 9 cut(s) 178, 244, 290, 694, 734, 761, 856, 857, 931
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 3 cut(s) 501, 959, 1082
SmoI CTYRAG 3 cut(s) 501, 959, 1082
SsiI CCGC 5 cut(s) 35, 236, 822, 994, 1381
SspMI CTAG 2 cut(s) 353, 858
StyD4I CCNGG 3 cut(s) 438, 696, 1272
StyI CCWWGG 4 cut(s) 183, 543, 814, 1363
TaaI ACNGT 4 cut(s) 175, 434, 787, 949
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 405, 951
TfiI GAWTC 5 cut(s) 128, 263, 416, 647, 1029
Tru1I TTAA 7 cut(s) 140, 207, 215, 383, 444, 972, 990
Tru9I TTAA 7 cut(s) 140, 207, 215, 383, 444, 972, 990
TscAI CASTG 4 cut(s) 46, 439, 805, 1125
TseFI GTSAC 2 cut(s) 908, 1202
TseI GCWGC 5 cut(s) 473, 770, 869, 1370, 1383
Tsp45I GTSAC 2 cut(s) 908, 1202
TspDTI ATGAA 4 cut(s) 429, 471, 752, 1275
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 4 cut(s) 46, 439, 805, 1125
Van91I CCANNNNNTGG 1 cut(s) 815
VneI GTGCAC 1 cut(s) 1077
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 5 cut(s) 332, 928, 977, 1049, 1262
XceI RCATGY 1 cut(s) 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 1262
XspI CTAG 2 cut(s) 353, 858
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.