FvH4_5g13730

Ras GTPase-activating protein-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7768297 .. 7773654
5358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13730.t3

Sequence Viewer

Length: 1413 bp
ATGCAAGAAGCAAATTTGGCAAATCCTACCCTTCCTCCCAGTGCTCAGCTTGTTGGCAATGCCTTTGTGGAGCAATATTACCAGGTCCTTCACCACTCACCAGAATTGGTGTATAAGTTTTATCAAGATTCAAGCGCTTTAAGCAGGACAGATATCAATGGCAACATGACAACAGTCAAGACGATGGATGCAATAAGGATAAAGATTAAATCCTTAAATTACGAAGAGTATACAGCGGAAATAAAGACTGCAGATGCTCAGGAATCTTTTGAGAAAGGGGTCATTGTTTTAGTGACTGGATGCTTGACTGGAAAAGACAACGTGGGAAGGAAATTCACCCAAACGTTCTTCCTAGCTCCACAGGAAAATGGGTACTATGTCTTAAATGATGTTTTTAGGTATATCGAGGACAATGAATCATCGCAGACAAATAGTGTCCCAGTTAACACCGTTGATGAAAGTGCTCCAGTAGCTGCCTCAATTGCAGAACCAGAACCTACTCAAGCTCCTGAGCCTCTTGTGGTGGAGGAACCTGCAACTTTTGTTGATGAGGATCCCAATAATGGTCCTGAAGTTGTTGATCCTTCAGATATAGAGGAAGGATCAGTTATCGAAGATGAGGTTGTGATAGAGGAGCCCCCGATTGAGTCAATTCAGAGTAGAGATCTTCCAGAAGTTGATCCAATCCCTGAAACCCAGGAGGATGCTCCGAAGAAATCATATGCATCGATTGTAAAGGTAATGAAAAGTAGTGTCACATCCAGTCCTGTCCGTGTTGCCCGACCGAGGACAGTATCTGCAAACACTGACCATCCATCCGTTGGCTCTGCAAAACCTTCTCCTGCACCAGAAGCATCAGCTCCTAGTGGCGATGCTGCTCCAGAAAGTAGCAATGCACATGAGGAAGCTGAAGGTCACTCCATACATGTAAGGAATTTGCCGTATGATGCGACTGTCGAACAACTTGAGAAGGAGTTTAAGAAATTTGGGTCTATTAAGCGGGACGGGATCCAAGTCAGAAGTAGTAAGCAAGGATTCTGTTTTGGCTTTGTTGAATTTGAAAGCGTGAGTTCCATGCAAAATGCGCTTGAGGCTTCACCTATCATGATCGGCGATCGTCAAGCGGTGATTGAGGAAAAGAGAACCACAACCCGAGTTAGCAATGGTGGAAGAGGAAGGTTTTCTTCAGGAAGAGCTGGCTTCCGAAGTGACTCTTTCAGGGGTGGTCGTGCAAACTATGGTGGTGGTGGTAGCCGTAGTTTTGGCAGGAATGAATTCAGAAACCAGGGTGAGTTTCAACGATCCAAGTCCTCGGCTGGACGCAATGGCGAGGGTTATCAGCGTGTTAATCCAAATGGCAGGGGTGGTGGTCGCCAAGGAGCAGCAAACAACCGCAGTTCTGTTCCTACTTGA

Protein Analysis

471

Amino Acids

51.04

Weight (kDa)

4.98

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 3 - 79 1.3e-20 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 254 - 310 6.4e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 230
AciI CCGC 4 cut(s) 236, 1000, 1124, 1393
AclI AACGTT 1 cut(s) 344
AclWI GGATC 8 cut(s) 548, 561, 575, 610, 674, 1003, 1016, 1296
AcsI RAATTY 6 cut(s) 13, 332, 934, 983, 1055, 1274
AcuI CTGAAG 4 cut(s) 570, 591, 930, 1170
AfaI GTAC 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 563, 786, 821
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 4 cut(s) 132, 1055, 1061, 1298
AjnI CCWGG 3 cut(s) 81, 696, 1284
AluBI AGCT 7 cut(s) 49, 356, 473, 506, 860, 908, 1196
AluI AGCT 7 cut(s) 49, 356, 473, 506, 860, 908, 1196
Alw21I GWGCWC 2 cut(s) 46, 466
AlwI GGATC 8 cut(s) 548, 561, 575, 610, 674, 1003, 1016, 1296
AlwNI CAGNNNCTG 2 cut(s) 473, 797
Ama87I CYCGRG 1 cut(s) 1152
Aor51HI AGCGCT 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 473, 875, 1382
ApoI RAATTY 6 cut(s) 13, 332, 934, 983, 1055, 1274
Asp700I GAANNNNTTC 2 cut(s) 1180, 1274
AspLEI GCGC 2 cut(s) 137, 1087
AspS9I GGNCC 2 cut(s) 85, 566
AsuHPI GGTGA 6 cut(s) 83, 90, 328, 1089, 1138, 1301
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 2 cut(s) 85, 566
BamHI GGATCC 2 cut(s) 553, 1008
BanII GRGCYC 1 cut(s) 639
Bbv12I GWGCWC 2 cut(s) 46, 466
BbvI GCAGC 3 cut(s) 460, 862, 1394
BccI CCATC 3 cut(s) 178, 819, 823
BceAI ACGGC 2 cut(s) 925, 1239
BciT130I CCWGG 3 cut(s) 83, 698, 1286
BfaI CTAG 2 cut(s) 353, 864
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 664
BisI GCNGC 3 cut(s) 474, 876, 1383
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 3 cut(s) 475, 877, 1384
Bme1390I CCNGG 3 cut(s) 83, 698, 1286
Bme18I GGWCC 2 cut(s) 85, 566
BmeT110I CYCGRG 1 cut(s) 1152
BmgT120I GGNCC 2 cut(s) 85, 566
BmiI GGNNCC 4 cut(s) 531, 555, 636, 1010
BmrFI CCNGG 3 cut(s) 83, 698, 1286
BmrI ACTGGG 2 cut(s) 33, 434
BmsI GCATC 8 cut(s) 178, 244, 290, 694, 734, 862, 863, 937
BmuI ACTGGG 2 cut(s) 33, 434
BoxI GACNNNNGTC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 450, 864
Bpu10I CCTNAGC 2 cut(s) 258, 510
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 3 cut(s) 486, 986, 1109
Bsa29I ATCGAT 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 5 cut(s) 696, 785, 1285, 1311, 1375
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 786, 821
Bse1I ACTGG 6 cut(s) 39, 301, 313, 440, 467, 762
Bse3DI GCAATG 4 cut(s) 64, 898, 1168, 1330
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 3 cut(s) 83, 698, 1286
BseCI ATCGAT 1 cut(s) 728
BseDI CCNNGG 5 cut(s) 696, 785, 1285, 1311, 1375
BseGI GGATG 6 cut(s) 193, 305, 709, 758, 811, 815
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 3 cut(s) 563, 786, 821
BseMI GCAATG 4 cut(s) 64, 898, 1168, 1330
BseMII CTCAG 3 cut(s) 59, 272, 501
BseNI ACTGG 6 cut(s) 39, 301, 313, 440, 467, 762
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 3 cut(s) 460, 862, 1394
BsgI GTGCAG 1 cut(s) 828
Bsh1285I CGRYCG 2 cut(s) 785, 1117
BshVI ATCGAT 1 cut(s) 728
BsiEI CGRYCG 2 cut(s) 785, 1117
BsiHKAI GWGCWC 2 cut(s) 46, 466
BsiHKCI CYCGRG 1 cut(s) 1152
BslFI GGGAC 2 cut(s) 422, 1016
BslI CCNNNNNNNGG 3 cut(s) 563, 786, 821
BsmFI GGGAC 2 cut(s) 422, 1016
BsoBI CYCGRG 1 cut(s) 1152
Bsp1286I GDGCHC 3 cut(s) 46, 466, 639
Bsp143I GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 4 cut(s) 236, 1000, 1124, 1393
BspCNI CTCAG 3 cut(s) 58, 271, 502
BspDI ATCGAT 1 cut(s) 728
BspHI TCATGA 1 cut(s) 1104
BspLI GGNNCC 4 cut(s) 531, 555, 636, 1010
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 8 cut(s) 548, 561, 575, 610, 674, 1003, 1016, 1296
BspQI GCTCTTC 1 cut(s) 1186
BsrDI GCAATG 4 cut(s) 64, 898, 1168, 1330
BsrI ACTGG 6 cut(s) 39, 301, 313, 440, 467, 762
BssECI CCNNGG 5 cut(s) 696, 785, 1285, 1311, 1375
BssMI GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 1375
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 3 cut(s) 83, 698, 1286
Bst4CI ACNGT 4 cut(s) 175, 451, 793, 955
Bst6I CTCTTC 3 cut(s) 219, 1165, 1186
BstC8I GCNNGC 1 cut(s) 1198
BstDEI CTNAG 3 cut(s) 45, 258, 510
BstF5I GGATG 6 cut(s) 193, 305, 709, 758, 811, 815
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 1087
BstKTI GATC 9 cut(s) 556, 583, 605, 667, 682, 1011, 1110, 1117, 1304
BstMBI GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
BstMCI CGRYCG 2 cut(s) 785, 1117
BstMWI GCNNNNNNNGC 7 cut(s) 17, 141, 470, 482, 851, 1084, 1091
BstNI CCWGG 3 cut(s) 83, 698, 1286
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 81, 696, 1284
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 460, 862, 1394
BstX2I RGATCY 3 cut(s) 553, 664, 1008
BstYI RGATCY 3 cut(s) 553, 664, 1008
BstZ17I GTATAC 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 728
BsuTUI ATCGAT 1 cut(s) 728
BtgZI GCGATG 2 cut(s) 405, 885
BtsCI GGATG 6 cut(s) 193, 305, 709, 758, 811, 815
BtsIMutI CAGTG 2 cut(s) 46, 804
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 1198
CaiI CAGNNNCTG 2 cut(s) 473, 797
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 2 cut(s) 137, 1087
Cfr13I GGNCC 2 cut(s) 85, 566
ClaI ATCGAT 1 cut(s) 728
CseI GACGC 1 cut(s) 1329
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 373
CviAII CATG 5 cut(s) 166, 899, 926, 1075, 1105
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 45, 258, 510
DpnI GATC 9 cut(s) 555, 582, 604, 666, 681, 1010, 1109, 1116, 1303
DpnII GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
Eam1104I CTCTTC 3 cut(s) 219, 1165, 1186
EarI CTCTTC 3 cut(s) 219, 1165, 1186
Eco130I CCWWGG 1 cut(s) 1375
Eco24I GRGCYC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 85, 566
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 4 cut(s) 570, 591, 930, 1170
Eco88I CYCGRG 1 cut(s) 1152
EcoO109I RGGNCCY 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 1274
EcoRII CCWGG 3 cut(s) 81, 696, 1284
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 1375
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 1375
FaeI CATG 5 cut(s) 169, 902, 929, 1078, 1108
FalI AAGNNNNNCTT 4 cut(s) 1168, 1200, 1198, 1230
FaqI GGGAC 2 cut(s) 422, 1016
FatI CATG 5 cut(s) 165, 898, 925, 1074, 1104
FauI CCCGC 1 cut(s) 993
FauNDI CATATG 1 cut(s) 721
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 3 cut(s) 474, 876, 1383
FokI GGATG 6 cut(s) 200, 312, 716, 745, 798, 802
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 3 cut(s) 474, 876, 1383
FspBI CTAG 2 cut(s) 353, 864
GlaI GCGC 2 cut(s) 136, 1086
GluI GCNGC 3 cut(s) 474, 876, 1383
GsuI CTGGAG 2 cut(s) 450, 864
HaeII RGCGCY 1 cut(s) 138
HgaI GACGC 1 cut(s) 1329
HhaI GCGC 2 cut(s) 137, 1087
Hin1II CATG 5 cut(s) 169, 902, 929, 1078, 1108
Hin6I GCGC 2 cut(s) 135, 1085
HinP1I GCGC 2 cut(s) 135, 1085
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 6 cut(s) 128, 263, 416, 647, 1035, 1211
HpaI GTTAAC 1 cut(s) 445
HphI GGTGA 6 cut(s) 83, 90, 328, 1089, 1138, 1301
Hpy166II GTNNAC 2 cut(s) 231, 445
Hpy188I TCNGA 6 cut(s) 589, 657, 711, 1019, 1205, 1280
Hpy188III TCNNGA 9 cut(s) 125, 178, 260, 509, 569, 671, 881, 1105, 1188
Hpy8I GTNNAC 2 cut(s) 231, 445
HpyAV CCTTC 9 cut(s) 41, 98, 321, 593, 594, 846, 905, 964, 1170
HpyCH4III ACNGT 4 cut(s) 175, 451, 793, 955
HpyCH4IV ACGT 2 cut(s) 321, 344
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 141, 470, 482, 851, 1084, 1091
HpyF3I CTNAG 3 cut(s) 45, 258, 510
HpySE526I ACGT 2 cut(s) 321, 344
Hsp92II CATG 5 cut(s) 169, 902, 929, 1078, 1108
HspAI GCGC 2 cut(s) 135, 1085
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
LguI GCTCTTC 1 cut(s) 1186
LmnI GCTCC 9 cut(s) 70, 361, 469, 511, 634, 712, 865, 883, 1379
Lsp1109I GCAGC 3 cut(s) 460, 862, 1394
LweI GCATC 8 cut(s) 178, 244, 290, 694, 734, 862, 863, 937
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 2 cut(s) 353, 864
MaeII ACGT 2 cut(s) 321, 344
MaeIII GTNAC 4 cut(s) 292, 754, 914, 1208
MalI GATC 9 cut(s) 555, 582, 604, 666, 681, 1010, 1109, 1116, 1303
MboI GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
MboII GAAGA 8 cut(s) 236, 340, 626, 659, 724, 1176, 1182, 1203
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 3 cut(s) 553, 664, 1008
MhlI GDGCHC 3 cut(s) 46, 466, 639
MlyI GAGTC 2 cut(s) 656, 1205
Mph1103I ATGCAT 1 cut(s) 727
MroXI GAANNNNTTC 2 cut(s) 1180, 1274
MseI TTAA 8 cut(s) 140, 207, 215, 383, 444, 978, 996, 1347
MspA1I CMGCKG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 83, 698, 1286
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 3 cut(s) 83, 698, 1286
MwoI GCNNNNNNNGC 7 cut(s) 17, 141, 470, 482, 851, 1084, 1091
NdeI CATATG 1 cut(s) 721
NdeII GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
NlaIII CATG 5 cut(s) 169, 902, 929, 1078, 1108
NlaIV GGNNCC 4 cut(s) 531, 555, 636, 1010
NmeAIII GCCGAG 1 cut(s) 1292
NmuCI GTSAC 4 cut(s) 292, 754, 914, 1208
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 929
PagI TCATGA 1 cut(s) 1104
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 1186
PdmI GAANNNNTTC 2 cut(s) 1180, 1274
PfeI GAWTC 4 cut(s) 128, 263, 416, 1035
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 3 cut(s) 475, 877, 1384
Ple19I CGATCG 1 cut(s) 1117
PleI GAGTC 2 cut(s) 655, 1205
PpsI GAGTC 2 cut(s) 655, 1205
PpuMI RGGWCCY 1 cut(s) 85
PscI ACATGT 1 cut(s) 925
PshAI GACNNNNGTC 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 3 cut(s) 81, 696, 1284
PspGI CCWGG 3 cut(s) 81, 696, 1284
PspN4I GGNNCC 4 cut(s) 531, 555, 636, 1010
PspPI GGNCC 2 cut(s) 85, 566
PspPPI RGGWCCY 1 cut(s) 85
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 473, 797
PsuI RGATCY 3 cut(s) 553, 664, 1008
PvuI CGATCG 1 cut(s) 1117
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SapI GCTCTTC 1 cut(s) 1186
SaqAI TTAA 8 cut(s) 140, 207, 215, 383, 444, 978, 996, 1347
SatI GCNGC 3 cut(s) 474, 876, 1383
Sau3AI GATC 9 cut(s) 553, 580, 602, 664, 679, 1008, 1107, 1114, 1301
Sau96I GGNCC 2 cut(s) 85, 566
SchI GAGTC 2 cut(s) 656, 1205
ScrFI CCNGG 3 cut(s) 83, 698, 1286
SduI GDGCHC 3 cut(s) 46, 466, 639
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 8 cut(s) 178, 244, 290, 694, 734, 862, 863, 937
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 2 cut(s) 85, 566
SmlI CTYRAG 3 cut(s) 501, 965, 1088
SmoI CTYRAG 3 cut(s) 501, 965, 1088
SsiI CCGC 4 cut(s) 236, 1000, 1124, 1393
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 353, 864
StyD4I CCNGG 3 cut(s) 81, 696, 1284
StyI CCWWGG 1 cut(s) 1375
TaaI ACNGT 4 cut(s) 175, 451, 793, 955
TaiI ACGT 2 cut(s) 324, 347
TaqI TCGA 4 cut(s) 405, 612, 728, 957
TaqII GACCGA 1 cut(s) 799
TfiI GAWTC 4 cut(s) 128, 263, 416, 1035
Tru1I TTAA 8 cut(s) 140, 207, 215, 383, 444, 978, 996, 1347
Tru9I TTAA 8 cut(s) 140, 207, 215, 383, 444, 978, 996, 1347
TscAI CASTG 2 cut(s) 46, 811
TseFI GTSAC 4 cut(s) 292, 754, 914, 1208
TseI GCWGC 3 cut(s) 473, 875, 1382
Tsp45I GTSAC 4 cut(s) 292, 754, 914, 1208
TspDTI ATGAA 4 cut(s) 429, 471, 758, 1287
TspGWI ACGGA 2 cut(s) 761, 808
TspRI CASTG 2 cut(s) 46, 811
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 85, 566
XapI RAATTY 6 cut(s) 13, 332, 934, 983, 1055, 1274
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 2 cut(s) 1180, 1274
XspI CTAG 2 cut(s) 353, 864
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.