AT5G61220

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012215
Physical Location & Seq
Reverse (-)
24625573 .. 24626965
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61220.1

Sequence Viewer

Length: 264 bp
ATGGTGTCTAGTAGTGAAGTTCTTAGCCTATGTCGTGCCTTGCTTCGAGCGGGACGTCAATTCCCTGATTACAACATTAGGGAGTACAGTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCATCGAAGGTGACTGAGGCTTATGCTGAAGCTAAAAAACAGCTTTTTGTTGCTGAGAGAGTGCTCAAGGTTTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

87

Amino Acids

10.11

Weight (kDa)

9.88

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 6 - 61 1.3e-22 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 50
AciI CCGC 2 cut(s) 50, 115
AcuI CTGAAG 2 cut(s) 186, 242
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 170, 181, 256
AluI AGCT 3 cut(s) 170, 181, 256
Alw21I GWGCWC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 101, 148
BfaI CTAG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 144, 183
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 2 cut(s) 50, 115
BspCNI CTCAG 2 cut(s) 145, 184
BsrBI CCGCTC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 23, 153, 192
BstF5I GGATG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 118, 244
CviJI RGCY 6 cut(s) 27, 111, 158, 170, 181, 256
CviKI_1 RGCY 6 cut(s) 27, 111, 158, 170, 181, 256
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 23, 153, 192
Eco130I CCWWGG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 186, 242
EcoO109I RGGNCCY 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 121, 247
FaiI YATR 5 cut(s) 31, 119, 162, 220, 245
FalI AAGNNNNNCTT 3 cut(s) 197, 229, 240
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 117, 243
FauI CCCGC 1 cut(s) 43
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 2 cut(s) 121, 247
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 90, 139
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 55
HpyF3I CTNAG 3 cut(s) 23, 153, 192
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 2 cut(s) 121, 247
LpnPI CCDG 1 cut(s) 78
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 59
MnlI CCTC 2 cut(s) 148, 234
NlaIII CATG 2 cut(s) 121, 247
NmuCI GTSAC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PfeI GAWTC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
PspPI GGNCC 1 cut(s) 99
PspPPI RGGWCCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 204
SetI ASST 7 cut(s) 58, 104, 150, 172, 183, 210, 258
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 59
SsiI CCGC 2 cut(s) 50, 115
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 46, 143
TasI AATT 1 cut(s) 59
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 9
ZraI GACGTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.