Prupe.5G200900_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012215
Physical Location & Seq
Forward (+)
16138903 .. 16139438
536 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G200900.1

Sequence Viewer

Length: 279 bp
ATGGCGTCGACGACCCCAAGAAAAGTGGAGGTGCTGTGGCTGTTTCGATCGCTGCTGCGTACGGCGAGGCAGTTCTGCGACTACAACGTGAGAGAGTACACCAAGCGCCGCACCATCGACGCCTTCCGCCACAACAAGTCTCTCTCCGAGCCCTCCCATCTCTCTTCAGTCATTTCCGACGGCAAGGCCCAGCTGGACCTCGCTAAAAGGCAAGCACTCGTGTACAAGCTCTATGCCCCAAAGATGACTAGCATCATGGACCTCAAGCCCACCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

93

Amino Acids

10.7

Weight (kDa)

10.14

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AciI CCGC 2 cut(s) 109, 127
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 2 cut(s) 5, 120
AfaI GTAC 3 cut(s) 61, 98, 224
AluBI AGCT 2 cut(s) 193, 229
AluI AGCT 2 cut(s) 193, 229
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 52, 55
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 3 cut(s) 187, 196, 259
AvaII GGWCC 2 cut(s) 196, 259
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 218
BbvI GCAGC 2 cut(s) 39, 42
BccI CCATC 2 cut(s) 122, 165
BceAI ACGGC 2 cut(s) 78, 196
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 3 cut(s) 53, 56, 109
BlsI GCNGC 3 cut(s) 54, 57, 110
Bme18I GGWCC 2 cut(s) 196, 259
BmgT120I GGNCC 3 cut(s) 187, 196, 259
BmsI GCATC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 5, 120
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
BseXI GCAGC 2 cut(s) 39, 42
BseYI CCCAGC 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 50
BsiWI CGTACG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 47
BspACI CCGC 2 cut(s) 109, 127
BspANI GGCC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 222
BssMI GATC 1 cut(s) 47
BssNI GRCGYC 2 cut(s) 5, 120
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 2 cut(s) 5, 120
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 47
BstMCI CGRYCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 39, 42
BsuRI GGCC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 3 cut(s) 187, 196, 259
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 60, 97, 223
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 256
CviJI RGCY 6 cut(s) 40, 151, 188, 193, 229, 268
CviKI_1 RGCY 6 cut(s) 40, 151, 188, 193, 229, 268
CviQI GTAC 3 cut(s) 60, 97, 223
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 196, 259
Eco57I CTGAAG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 234, 257
FatI CATG 1 cut(s) 255
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 3 cut(s) 53, 56, 109
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 53, 56, 109
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 53, 56, 109
GsaI CCCAGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 5, 120
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
Hpy166II GTNNAC 3 cut(s) 9, 99, 223
Hpy188I TCNGA 3 cut(s) 148, 178, 278
Hpy8I GTNNAC 3 cut(s) 9, 99, 223
Hpy99I CGWCG 4 cut(s) 10, 13, 122, 182
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 2 cut(s) 5, 120
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 179, 203
Lsp1109I GCAGC 2 cut(s) 39, 42
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 87
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 5 cut(s) 22, 60, 163, 209, 272
MspA1I CMGCKG 1 cut(s) 193
NdeII GATC 1 cut(s) 47
NlaIII CATG 1 cut(s) 259
Pfl23II CGTACG 1 cut(s) 59
PkrI GCNGC 3 cut(s) 54, 57, 110
Ple19I CGATCG 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 189
PspLI CGTACG 1 cut(s) 59
PspPI GGNCC 3 cut(s) 187, 196, 259
PvuI CGATCG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 3 cut(s) 61, 98, 224
RsaNI GTAC 3 cut(s) 60, 97, 223
SalI GTCGAC 1 cut(s) 7
SatI GCNGC 3 cut(s) 53, 56, 109
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 3 cut(s) 187, 196, 259
SduI GDGCHC 1 cut(s) 153
SetI ASST 6 cut(s) 33, 90, 195, 201, 231, 264
SfaNI GCATC 1 cut(s) 261
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 2 cut(s) 196, 259
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 2 cut(s) 109, 127
SspMI CTAG 1 cut(s) 249
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 8, 46, 117
TatI WGTACW 2 cut(s) 96, 222
TauI GCSGC 1 cut(s) 111
TseI GCWGC 2 cut(s) 52, 55
VpaK11BI GGWCC 2 cut(s) 196, 259
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.