FvH4_6g47340

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012215
Physical Location & Seq
Reverse (-)
35901627 .. 35903440
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47340.t1

Sequence Viewer

Length: 282 bp
ATGACAGTAGCAGCGGCGTCAGCTCCGTCGCGAGCGGAGGTCCTCCATCTCTACCGCTCCTTTCTCCGCGTCGCTCGGAAGTTCACAGACTACAACGTCAGGGAGTACACCAAGCGCAGAGCCGTCGACGCCTTTCACCAGAACCGGAACCTCTCCGACCCGTCGGCGATGTCCTCCGCCTTCGCCGACGGCAAGGCGCAGCTCGAGGTCGCCACGCGCCAGGCGGTGGTGTACTCTCTCTACGCGCCCAAGCTCAAGAGCGTCATGGAGGTTCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

94

Amino Acids

10.47

Weight (kDa)

9.99

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 13 - 70 4.6e-20 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 2 cut(s) 35, 57
AccI GTMKAC 1 cut(s) 126
AccII CGCG 4 cut(s) 31, 69, 217, 245
AciI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
AcyI GRCGYC 2 cut(s) 17, 129
AfaI GTAC 2 cut(s) 107, 233
AfiI CCNNNNNNNGG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 3 cut(s) 23, 202, 253
AluI AGCT 3 cut(s) 23, 202, 253
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 11, 199
AspLEI GCGC 4 cut(s) 117, 199, 219, 247
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 23, 211
BccI CCATC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 107, 205
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 221
BfaI CTAG 1 cut(s) 280
BisI GCNGC 3 cut(s) 12, 15, 200
BlsI GCNGC 3 cut(s) 13, 16, 201
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 17, 129
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 23, 211
Bsh1236I CGCG 4 cut(s) 31, 69, 217, 245
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 203
Bsp68I TCGCGA 1 cut(s) 31
BspACI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
BspFNI CGCG 4 cut(s) 31, 69, 217, 245
BspLI GGNNCC 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 35, 57
BssNI GRCGYC 2 cut(s) 17, 129
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 7
BstACI GRCGYC 2 cut(s) 17, 129
BstC8I GCNNGC 1 cut(s) 33
BstFNI CGCG 4 cut(s) 31, 69, 217, 245
BstHHI GCGC 4 cut(s) 117, 199, 219, 247
BstMWI GCNNNNNNNGC 2 cut(s) 20, 128
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 4 cut(s) 31, 69, 217, 245
BstV1I GCAGC 2 cut(s) 23, 211
BtgZI GCGATG 1 cut(s) 182
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 4 cut(s) 117, 199, 219, 247
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 4 cut(s) 6, 58, 137, 250
Csp6I GTAC 2 cut(s) 106, 232
CviAII CATG 1 cut(s) 265
CviJI RGCY 4 cut(s) 23, 122, 202, 253
CviKI_1 RGCY 4 cut(s) 23, 122, 202, 253
CviQI GTAC 2 cut(s) 106, 232
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 268
FaiI YATR 1 cut(s) 266
FatI CATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 12, 15, 200
Fsp4HI GCNGC 3 cut(s) 12, 15, 200
FspBI CTAG 1 cut(s) 280
GlaI GCGC 4 cut(s) 116, 198, 218, 246
GluI GCNGC 3 cut(s) 12, 15, 200
HapII CCGG 1 cut(s) 145
HgaI GACGC 4 cut(s) 6, 58, 137, 250
HhaI GCGC 4 cut(s) 117, 199, 219, 247
Hin1I GRCGYC 2 cut(s) 17, 129
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 4 cut(s) 115, 197, 217, 245
HinP1I GCGC 4 cut(s) 115, 197, 217, 245
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 4 cut(s) 84, 108, 127, 232
Hpy188I TCNGA 3 cut(s) 78, 157, 276
Hpy188III TCNNGA 2 cut(s) 30, 256
Hpy8I GTNNAC 4 cut(s) 84, 108, 127, 232
Hpy99I CGWCG 6 cut(s) 31, 74, 128, 131, 166, 191
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 128
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 17, 129
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 4 cut(s) 115, 197, 217, 245
LmnI GCTCC 2 cut(s) 28, 62
LpnPI CCDG 5 cut(s) 85, 152, 158, 206, 233
Lsp1109I GCAGC 2 cut(s) 23, 211
MaeI CTAG 1 cut(s) 280
MaeII ACGT 1 cut(s) 96
MbiI CCGCTC 2 cut(s) 35, 57
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 31, 53, 161, 184, 199, 262
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 4 cut(s) 31, 69, 217, 245
MwoI GCNNNNNNNGC 2 cut(s) 20, 128
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 149
NruI TCGCGA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 3 cut(s) 13, 16, 201
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 40
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 203
RruI TCGCGA 1 cut(s) 31
RsaI GTAC 2 cut(s) 107, 233
RsaNI GTAC 2 cut(s) 106, 232
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 3 cut(s) 12, 15, 200
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 221
SetI ASST 8 cut(s) 25, 42, 99, 153, 204, 210, 255, 273
Sfr274I CTCGAG 1 cut(s) 203
SgrDI CGTCGACG 1 cut(s) 125
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 203, 254
SmoI CTYRAG 2 cut(s) 203, 254
SsiI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
SspMI CTAG 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 126, 204
TatI WGTACW 2 cut(s) 105, 231
TauI GCSGC 1 cut(s) 17
TseI GCWGC 2 cut(s) 11, 199
TspGWI ACGGA 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.