Rroxscaffold_2G00084930

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012215
Physical Location & Seq
Forward (+)
7361895 .. 7363567
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084930.1

Sequence Viewer

Length: 285 bp
ATGAGTGTAGCAGCGGCTTCAGCTCCGTCGCGAGCGGAGGTCCTCCATCTCTACCGCTCCTTCCTCCGCGTCGCTCGAAAATTCCCAGACTACAACATCCGAGAGTACACCAAACGCAGAGCCGTTGACGCCTTTCACCACAACCGAAACCTCTCAGACGCGTCGGCGATTTCCTCCGCCTTTTCCGACGGCAAGGCTCAGCTCGAGGTCGCCACTCGCCAGGCGGACAATTTCTCTTGTGACATCCGCTGTGGTCGGAGTGCACTGATTGATGGAGGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

9.5

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 13 - 70 1.1e-21 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 35, 57
AccII CGCG 3 cut(s) 31, 69, 161
AciI CCGC 7 cut(s) 14, 35, 55, 67, 177, 224, 247
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 159
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 23, 202
AluI AGCT 2 cut(s) 23, 202
Alw21I GWGCWC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 54, 266
BceAI ACGGC 2 cut(s) 107, 205
BciT130I CCWGG 1 cut(s) 221
BisI GCNGC 2 cut(s) 12, 15
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 13, 16
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 96, 243
BseMII CTCAG 2 cut(s) 168, 212
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 31, 69, 161
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 31
BspACI CCGC 7 cut(s) 14, 35, 55, 67, 177, 224, 247
BspCNI CTCAG 2 cut(s) 167, 211
BspFNI CGCG 3 cut(s) 31, 69, 161
BsrBI CCGCTC 2 cut(s) 35, 57
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 154, 198
BstF5I GGATG 2 cut(s) 96, 243
BstFNI CGCG 3 cut(s) 31, 69, 161
BstMWI GCNNNNNNNGC 2 cut(s) 20, 128
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 3 cut(s) 31, 69, 161
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 96, 243
BtsIMutI CAGTG 1 cut(s) 263
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 4 cut(s) 58, 137, 150, 167
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 5 cut(s) 17, 23, 122, 197, 202
CviKI_1 RGCY 5 cut(s) 17, 23, 122, 197, 202
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 154, 198
EciI GGCGGA 2 cut(s) 166, 239
Eco47I GGWCC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 2 cut(s) 83, 230
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
HgaI GACGC 4 cut(s) 58, 137, 150, 167
Hin1I GRCGYC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 108, 127, 263
Hpy188I TCNGA 4 cut(s) 101, 157, 187, 258
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 3 cut(s) 108, 127, 263
Hpy99I CGWCG 4 cut(s) 31, 74, 166, 191
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 128
HpyF3I CTNAG 2 cut(s) 154, 198
Hsp92I GRCGYC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 28, 62
LpnPI CCDG 3 cut(s) 99, 206, 233
Lsp1109I GCAGC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 239
MbiI CCGCTC 2 cut(s) 35, 57
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 2 cut(s) 80, 229
MluI ACGCGT 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 210, 236
MnlI CCTC 7 cut(s) 31, 53, 74, 161, 184, 199, 269
MseI TTAA 1 cut(s) 283
MspA1I CMGCKG 2 cut(s) 14, 249
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 3 cut(s) 31, 69, 161
MwoI GCNNNNNNNGC 2 cut(s) 20, 128
NmuCI GTSAC 1 cut(s) 239
NruI TCGCGA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 203
PkrI GCNGC 2 cut(s) 13, 16
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 1 cut(s) 40
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 203
RruI TCGCGA 1 cut(s) 31
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 2 cut(s) 12, 15
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 265
SetI ASST 5 cut(s) 25, 42, 153, 204, 210
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 80, 229
SsiI CCGC 7 cut(s) 14, 35, 55, 67, 177, 224, 247
StyD4I CCNGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 76, 204
TasI AATT 2 cut(s) 80, 229
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 270
VneI GTGCAC 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.