Prupe.3G258000_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012215
Physical Location & Seq
Reverse (-)
24528537 .. 24530386
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G258000.1

Sequence Viewer

Length: 279 bp
ATGAGTATAGCGGCCGGAGCTCCTTCTCGAGCGGAGGTGCTCACACTGTTCCGCTCTTTTCTTCGCGTGGCTCGCAAATTCACAGACTACAACATCAGAGAGTATACGAAACGCAGAACCATCGACGCGTTTCGTCAGAATCGGAACCTCACGGACCCATCTGCCATTTCCGCTGCGTTTTCAGATGGCAAGGCTCAGTTCGAGGTCGCCAATCGGCAGGCTGTTGTTTACTCTCTCTACGCTCCAAAGCTCAAGAGCGTCATGGAGGTTCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

10.33

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 32, 54
AccI GTMKAC 1 cut(s) 104
AccII CGCG 2 cut(s) 66, 128
AciI CCGC 4 cut(s) 11, 32, 52, 171
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 126
AluBI AGCT 2 cut(s) 20, 250
AluI AGCT 2 cut(s) 20, 250
Alw21I GWGCWC 2 cut(s) 22, 42
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 22, 42
BbvI GCAGC 1 cut(s) 160
BccI CCATC 3 cut(s) 128, 166, 179
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BisI GCNGC 2 cut(s) 12, 174
BlsI GCNGC 2 cut(s) 13, 175
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 146, 156
BpuEI CTTGAG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 66, 128
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 22, 42
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 22, 42
BspACI CCGC 4 cut(s) 11, 32, 52, 171
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 2 cut(s) 66, 128
BspLI GGNNCC 2 cut(s) 146, 156
BsrBI CCGCTC 2 cut(s) 32, 54
BssNAI GTATAC 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 73, 219
BstDEI CTNAG 1 cut(s) 195
BstFNI CGCG 2 cut(s) 66, 128
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 17, 72, 170
BstUI CGCG 2 cut(s) 66, 128
BstV1I GCAGC 1 cut(s) 160
BstZ17I GTATAC 1 cut(s) 105
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 73, 219
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 2 cut(s) 134, 247
CviAII CATG 1 cut(s) 262
CviJI RGCY 6 cut(s) 14, 20, 71, 194, 221, 250
CviKI_1 RGCY 6 cut(s) 14, 20, 71, 194, 221, 250
DdeI CTNAG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 154
Eco52I CGGCCG 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 22
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 8, 105, 263
FatI CATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 12, 174
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 12, 174
GluI GCNGC 2 cut(s) 12, 174
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 15
HgaI GACGC 2 cut(s) 134, 247
Hin1II CATG 1 cut(s) 265
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 105, 229
Hpy188I TCNGA 5 cut(s) 98, 138, 144, 184, 273
Hpy188III TCNNGA 2 cut(s) 27, 253
Hpy8I GTNNAC 2 cut(s) 105, 229
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 72, 170
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 265
LmnI GCTCC 3 cut(s) 17, 25, 247
LpnPI CCDG 2 cut(s) 28, 203
Lsp1109I GCAGC 1 cut(s) 160
MbiI CCGCTC 2 cut(s) 32, 54
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 2 cut(s) 22, 42
MluCI AATT 1 cut(s) 77
MluI ACGCGT 1 cut(s) 126
MnlI CCTC 4 cut(s) 28, 158, 196, 259
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 15
MvnI CGCG 2 cut(s) 66, 128
MwoI GCNNNNNNNGC 3 cut(s) 17, 72, 170
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 146, 156
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 13, 175
Psp124BI GAGCTC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 146, 156
PspPI GGNCC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 22
SatI GCNGC 2 cut(s) 12, 174
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 2 cut(s) 22, 42
SetI ASST 6 cut(s) 22, 39, 150, 207, 252, 270
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 27, 251
SmoI CTYRAG 2 cut(s) 27, 251
Sse9I AATT 1 cut(s) 77
SsiI CCGC 4 cut(s) 11, 32, 52, 171
SstI GAGCTC 1 cut(s) 22
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 28, 123, 201
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 51
TseI GCWGC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.