Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012215

Physical Location & Seq

Genomic Coordinates Reverse (-)

34433456 .. 34435761

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1156500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGTGCAGCGGCCGGAGTTCCTTCTCGGGCGGAGGTGCTCACGATGTTCCGCTCTTTTCTCCGAGTGGCTCGCAAATTCACCGACTACAACATCAGGGAGTACACGAAACGCAAAGCCGTCGACGCGTTTCGTCAGAATCGAAACCTTTCGGACCCGTCTGCCATTTCCGCCGCGTTCTCAGACGGGAAGGCTCAGCTGGAGGTCGCCAAGCGGCAGGCTGTTATTTACTCTCTCTACGCTCCCAAGCTTAAGAGCGTCATGGAGGTTCAGAACCCAATCAAGCACCGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

99

Amino Acids

11.09

Weight (kDa)

10.43

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_LYR	PF05347	12 - 69	2.9e-19	Complex 1 protein (LYR family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61220 AT5G61220 AT5G61220
fragaria_vesca	FvH4_6g47340
malus_domestica	MD00G1156500.v1.1 MD08G1088600.v1.1 MD09G1062400.v1.1
prunus_persica	Prupe.3G258000_v2.0.a1 Prupe.5G200900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166371
rosa_laevigata	RLG00000021615
rosa_multiflora	Rmu_co8054098.1_g000001 Rmu_sc0007974.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084930
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG588600 Rh2BG600700 Rh2DG610900
rosa_wichuraiana	Rw2G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	128, 176
AciI	CCGC	6 cut(s)	11, 32, 52, 171, 174, 214
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	126
AluBI	AGCT	2 cut(s)	199, 250
AluI	AGCT	2 cut(s)	199, 250
Alw21I	GWGCWC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	4 cut(s)	9, 12, 174, 215
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	4 cut(s)	10, 13, 175, 216
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	195, 209
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	2 cut(s)	128, 176
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	15
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	6 cut(s)	11, 32, 52, 171, 174, 214
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	194, 208
BspFNI	CGCG	2 cut(s)	128, 176
BspLI	GGNNCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	73, 219
BstDEI	CTNAG	2 cut(s)	181, 195
BstFNI	CGCG	2 cut(s)	128, 176
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 170
BstUI	CGCG	2 cut(s)	128, 176
BstV1I	GCAGC	1 cut(s)	20
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	73, 219
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	2 cut(s)	134, 247
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	7 cut(s)	14, 71, 119, 194, 199, 221, 250
CviKI_1	RGCY	7 cut(s)	14, 71, 119, 194, 199, 221, 250
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	181, 195
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
EciI	GGCGGA	2 cut(s)	47, 160
EclXI	CGGCCG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	27
FaeI	CATG	1 cut(s)	265
FaiI	YATR	1 cut(s)	263
FatI	CATG	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	9, 12, 174, 215
Fsp4HI	GCNGC	4 cut(s)	9, 12, 174, 215
GluI	GCNGC	4 cut(s)	9, 12, 174, 215
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	2 cut(s)	134, 247
Hin1II	CATG	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	105, 124
Hpy188I	TCNGA	5 cut(s)	65, 138, 154, 184, 273
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	105, 124
Hpy99I	CGWCG	2 cut(s)	125, 128
HpyAV	CCTTC	2 cut(s)	33, 184
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 170
HpyF3I	CTNAG	2 cut(s)	181, 195
Hsp92II	CATG	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	28, 82, 185, 203
Lsp1109I	GCAGC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	77, 292
MluI	ACGCGT	1 cut(s)	126
MnlI	CCTC	3 cut(s)	28, 196, 259
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	11, 199
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	128, 176
MwoI	GCNNNNNNNGC	2 cut(s)	125, 170
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	10, 13, 175, 216
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	4 cut(s)	9, 12, 174, 215
Sau96I	GGNCC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	39, 150, 201, 207, 252, 270
SgrDI	CGTCGACG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	77, 292
SsiI	CCGC	6 cut(s)	11, 32, 52, 171, 174, 214
TaqI	TCGA	2 cut(s)	123, 142
TasI	AATT	2 cut(s)	77, 292
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	3 cut(s)	14, 176, 217
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	8
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.