Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8054098.1

Orthogroup ID

OG0012215

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 322

Gene Structure 322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8054098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

atgagtgtagcagcggcttcagctccgtcgcgagcggaggtcctccatctctaccgctccttcctccgcgtcgctcgaaaattcgcagactacaacatccgagagtacaccaaacgcagggccgttgacgcctttcaccacaaccgaaacctctcagacccgtcggcgatttcctccgccttttccgacggcaaggctcagctcgagatcgccactcgccaggcggtggtttactctctctacgcgcccaagctcaagagcgtgatggaggctcagattcccatccacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

9.99

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61220 AT5G61220 AT5G61220
fragaria_vesca	FvH4_6g47340
malus_domestica	MD00G1156500.v1.1 MD08G1088600.v1.1 MD09G1062400.v1.1
prunus_persica	Prupe.3G258000_v2.0.a1 Prupe.5G200900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166371
rosa_laevigata	RLG00000021615
rosa_multiflora	Rmu_co8054098.1_g000001 Rmu_sc0007974.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084930
rosa_rugosa	Rorug02G0522500
rosa_samantha	Rh2AG588600 Rh2BG600700 Rh2DG610900
rosa_wichuraiana	Rw2G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccBSI	CCGCTC	2 cut(s)	35, 57
AccII	CGCG	3 cut(s)	31, 69, 245
AciI	CCGC	6 cut(s)	14, 35, 55, 67, 177, 224
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	117, 226
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	23, 202, 253
AluI	AGCT	3 cut(s)	23, 202, 253
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	40, 120
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	54, 259
BceAI	ACGGC	2 cut(s)	107, 205
BciT130I	CCWGG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	12, 15
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	40, 120
BmrFI	CCNGG	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 226
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	96, 282
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	117, 226
BseMII	CTCAG	3 cut(s)	168, 212, 287
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	3 cut(s)	31, 69, 245
BshFI	GGCC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	117, 226
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	207
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp68I	TCGCGA	1 cut(s)	31
BspACI	CCGC	6 cut(s)	14, 35, 55, 67, 177, 224
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	3 cut(s)	167, 211, 286
BspFNI	CGCG	3 cut(s)	31, 69, 245
BsrBI	CCGCTC	2 cut(s)	35, 57
BssMI	GATC	1 cut(s)	207
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	154, 198, 273
BstF5I	GGATG	2 cut(s)	96, 282
BstFNI	CGCG	3 cut(s)	31, 69, 245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 128
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	3 cut(s)	31, 69, 245
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	96, 282
BtuMI	TCGCGA	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	40, 120
CseI	GACGC	2 cut(s)	58, 137
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	7 cut(s)	17, 23, 122, 197, 202, 253, 272
CviKI_1	RGCY	7 cut(s)	17, 23, 122, 197, 202, 253, 272
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	154, 198, 273
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	2 cut(s)	83, 269
Fsp4HI	GCNGC	2 cut(s)	12, 15
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	12, 15
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	2 cut(s)	58, 137
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	108, 127, 232
Hpy188I	TCNGA	4 cut(s)	101, 157, 187, 276
Hpy188III	TCNNGA	3 cut(s)	30, 205, 256
Hpy8I	GTNNAC	3 cut(s)	108, 127, 232
Hpy99I	CGWCG	4 cut(s)	31, 74, 166, 191
HpyAV	CCTTC	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 128
HpyF3I	CTNAG	3 cut(s)	154, 198, 273
Hsp92I	GRCGYC	1 cut(s)	129
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	28, 62
LpnPI	CCDG	3 cut(s)	103, 206, 233
Lsp1109I	GCAGC	1 cut(s)	23
MalI	GATC	1 cut(s)	209
MbiI	CCGCTC	2 cut(s)	35, 57
MboI	GATC	1 cut(s)	207
MluCI	AATT	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	31, 53, 74, 161, 184, 262
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	3 cut(s)	31, 69, 245
MwoI	GCNNNNNNNGC	2 cut(s)	20, 128
NdeII	GATC	1 cut(s)	207
NruI	TCGCGA	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	13, 16
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	40, 120
PspPPI	RGGWCCY	1 cut(s)	40
RruI	TCGCGA	1 cut(s)	31
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	40, 120
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	5 cut(s)	25, 42, 153, 204, 255
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	203, 254
SmoI	CTYRAG	2 cut(s)	203, 254
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	6 cut(s)	14, 35, 55, 67, 177, 224
StyD4I	CCNGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	76, 204
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.