MD08G1088600.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012215
Physical Location & Seq
Forward (+)
7312757 .. 7313114
358 bp
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UTR
Exon/CDS
Intron
MD08G1088600.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGTTGTGGCGGCCCAAGCTTCTTCTCGGGCTGAGGTGCTCACGATGTTCTGCACTTTCCTTCGAGTGGCTCGTAAGTTCACTGACTATAACATCAGGGACTACACGAAATGCCAAACCGTCGATAATTTTCATCAGAATCGAAACCTTTCAGACATGTCTGCCATCTCCTCCGCCTTCTCAAATGGGAAGGCTCAGCTGGAGGTCGCCAATCGGCAGGCTCTCGTTTACTATCTCTACGCTTCGAAGCTCAAGAGCGTCATGAAGGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

92

Amino Acids

10.29

Weight (kDa)

9.51

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 12 - 69 8.5e-13 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 174
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 156
AluBI AGCT 3 cut(s) 20, 199, 250
AluI AGCT 3 cut(s) 20, 199, 250
Alw21I GWGCWC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 173
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 24, 209
BseRI GAGGAG 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 2 cut(s) 11, 174
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 25, 208
BspHI TCATGA 1 cut(s) 261
BspT104I TTCGAA 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 33, 195
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 219
CciI TCATGA 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 247
CviAII CATG 2 cut(s) 157, 262
CviJI RGCY 8 cut(s) 14, 20, 32, 71, 194, 199, 221, 250
CviKI_1 RGCY 8 cut(s) 14, 20, 32, 71, 194, 199, 221, 250
DdeI CTNAG 2 cut(s) 33, 195
EciI GGCGGA 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 27
FaeI CATG 2 cut(s) 160, 265
FaiI YATR 3 cut(s) 90, 158, 263
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 156, 261
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 160, 265
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 81, 229
Hpy188I TCNGA 2 cut(s) 138, 154
Hpy188III TCNNGA 3 cut(s) 43, 253, 262
Hpy8I GTNNAC 2 cut(s) 81, 229
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 71, 184, 187, 259
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 33, 195
Hsp92II CATG 2 cut(s) 160, 265
LpnPI CCDG 3 cut(s) 82, 185, 203
MboII GAAGA 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 127
MnlI CCTC 3 cut(s) 28, 181, 196
MroXI GAANNNNTTC 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 160, 265
NspI RCATGY 1 cut(s) 160
NspV TTCGAA 1 cut(s) 245
PagI TCATGA 1 cut(s) 261
PciI ACATGT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 13
PscI ACATGT 1 cut(s) 156
PspPI GGNCC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 199
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 42
SetI ASST 6 cut(s) 22, 39, 150, 201, 207, 252
SfuI TTCGAA 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 127
SsiI CCGC 2 cut(s) 11, 174
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 64, 123, 142, 245
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 88
XceI RCATGY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.